Wall clock time and date at job start Mon Mar 30 2020 05:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34949 * 126.03584 * 2 1 4 4 C 1.35319 * 107.74100 * 180.14856 * 3 2 1 5 5 C 1.50697 * 126.03443 * 179.87517 * 4 3 2 6 6 C 1.50700 * 109.47266 * 269.71532 * 5 4 3 7 7 O 1.20822 * 119.99958 * 0.02562 * 6 5 4 8 8 O 1.34234 * 120.00068 * 180.02562 * 6 5 4 9 9 C 1.45196 * 116.99938 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47070 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.47505 * 300.00350 * 10 9 8 12 12 C 1.52998 * 109.46989 * 60.00116 * 10 9 8 13 13 C 1.50703 * 109.47221 * 180.02562 * 10 9 8 14 14 H 1.07998 * 119.99956 * 359.97438 * 13 10 9 15 15 C 1.37876 * 120.00171 * 180.02562 * 13 10 9 16 16 N 1.31521 * 119.99797 * 359.97438 * 15 13 10 17 17 Si 1.86793 * 120.00142 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.47337 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47423 * 120.00014 * 17 15 13 20 20 H 1.48510 * 109.47166 * 239.99931 * 17 15 13 21 21 C 1.39864 * 107.92183 * 359.61236 * 4 3 2 22 22 N 1.30838 * 108.20565 * 0.24409 * 21 4 3 23 23 H 1.09001 * 109.46913 * 270.25185 * 1 2 3 24 24 H 1.09003 * 109.47012 * 30.25314 * 1 2 3 25 25 H 1.09004 * 109.46999 * 150.25404 * 1 2 3 26 26 H 1.07997 * 126.12955 * 0.02562 * 3 2 1 27 27 H 1.09004 * 109.47205 * 149.71625 * 5 4 3 28 28 H 1.08997 * 109.47395 * 29.72117 * 5 4 3 29 29 H 1.08996 * 109.47465 * 299.99911 * 9 8 6 30 30 H 1.08999 * 109.47008 * 59.99921 * 9 8 6 31 31 H 1.08999 * 109.46743 * 59.99340 * 11 10 9 32 32 H 1.08995 * 109.47247 * 180.02562 * 11 10 9 33 33 H 1.08999 * 109.46824 * 300.00005 * 11 10 9 34 34 H 1.09004 * 109.47306 * 60.00196 * 12 10 9 35 35 H 1.09006 * 109.47255 * 180.02562 * 12 10 9 36 36 H 1.09003 * 109.47378 * 299.99864 * 12 10 9 37 37 H 0.97004 * 120.00040 * 179.97438 * 16 15 13 38 38 H 1.08010 * 125.89632 * 180.25606 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7679 1.5453 -0.0072 6 6 5.1762 1.8317 -1.4293 7 8 4.5382 1.3700 -2.3456 8 8 6.2487 2.5997 -1.6780 9 6 6.5836 2.8330 -3.0714 10 6 7.8248 3.7236 -3.1554 11 6 7.5404 5.0609 -2.4684 12 6 8.9974 3.0313 -2.4580 13 6 8.1720 3.9663 -4.6016 14 1 7.5682 3.5286 -5.3827 15 6 9.2613 4.7461 -4.9276 16 7 9.9970 5.2787 -3.9764 17 14 9.6922 5.0463 -6.7202 18 1 8.7160 4.3408 -7.5888 19 1 9.6450 6.5032 -7.0035 20 1 11.0587 4.5329 -6.9936 21 6 3.5346 -0.7321 0.0035 22 7 2.2891 -1.1328 0.0055 23 1 -0.3633 0.0045 1.0277 24 1 -0.3633 0.8877 -0.5178 25 1 -0.3633 -0.8923 -0.5099 26 1 1.9282 2.1193 0.0004 27 1 5.5821 1.0365 0.5090 28 1 4.5441 2.4824 0.5024 29 1 6.7858 1.8803 -3.5609 30 1 5.7483 3.3266 -3.5681 31 1 7.2889 4.8857 -1.4224 32 1 8.4245 5.6955 -2.5287 33 1 6.7050 5.5541 -2.9652 34 1 9.2001 2.0786 -2.9474 35 1 9.8816 3.6660 -2.5174 36 1 8.7460 2.8562 -1.4119 37 1 10.7636 5.8271 -4.2057 38 1 4.4055 -1.3710 0.0069 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184775209.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:43 Heat of formation + Delta-G solvation = -35.312431 kcal Electronic energy + Delta-G solvation = -19929.065312 eV Core-core repulsion = 16772.715938 eV Total energy + Delta-G solvation = -3156.349374 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.22122 -41.12711 -38.23852 -36.51281 -34.59672 -33.28804 -32.75555 -29.52482 -27.64284 -27.52733 -27.20892 -26.33373 -22.58694 -22.04777 -20.94511 -20.64433 -18.60258 -17.90596 -17.64913 -17.31432 -17.03261 -16.51071 -16.09145 -15.37968 -14.97881 -14.93621 -14.54417 -14.23163 -13.97258 -13.59949 -13.37894 -13.33608 -13.20328 -13.03845 -12.85649 -12.67911 -12.58537 -12.29264 -12.12774 -11.65942 -11.58346 -11.50139 -11.21189 -11.11690 -10.69602 -10.38802 -10.36331 -9.38631 -8.03386 -6.21303 0.92493 1.40629 1.42198 1.45107 1.53531 1.57722 1.72088 2.26820 2.49754 3.19784 3.61656 3.97073 4.00529 4.27030 4.30660 4.32256 4.36045 4.44832 4.49703 4.67734 4.68725 4.77549 4.87647 4.91750 5.09176 5.14389 5.24719 5.27947 5.41963 5.63186 5.65729 5.68025 5.80937 6.12222 6.13369 6.21897 6.40140 6.70868 6.82560 6.98230 7.46724 8.96189 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.043623 B = 0.003526 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.706553 B = 7939.493910 C = 8127.259714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.382 5.382 3 C 0.074 3.926 4 C -0.248 4.248 5 C -0.020 4.020 6 C 0.449 3.551 7 O -0.550 6.550 8 O -0.354 6.354 9 C 0.099 3.901 10 C 0.060 3.940 11 C -0.118 4.118 12 C -0.119 4.119 13 C -0.535 4.535 14 H 0.046 0.954 15 C 0.029 3.971 16 N -0.899 5.899 17 Si 0.951 3.049 18 H -0.274 1.274 19 H -0.279 1.279 20 H -0.280 1.280 21 C 0.051 3.949 22 N -0.337 5.337 23 H 0.092 0.908 24 H 0.110 0.890 25 H 0.087 0.913 26 H 0.205 0.795 27 H 0.134 0.866 28 H 0.138 0.862 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.018 0.982 34 H 0.017 0.983 35 H 0.062 0.938 36 H 0.036 0.964 37 H 0.262 0.738 38 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.731 -5.900 11.649 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.163 5.163 3 C -0.074 4.074 4 C -0.260 4.260 5 C -0.058 4.058 6 C 0.294 3.706 7 O -0.440 6.440 8 O -0.270 6.270 9 C 0.025 3.975 10 C 0.060 3.940 11 C -0.176 4.176 12 C -0.177 4.177 13 C -0.573 4.573 14 H 0.064 0.936 15 C -0.172 4.172 16 N -0.537 5.537 17 Si 0.777 3.223 18 H -0.199 1.199 19 H -0.204 1.204 20 H -0.205 1.205 21 C -0.134 4.134 22 N -0.159 5.159 23 H 0.111 0.889 24 H 0.128 0.872 25 H 0.105 0.895 26 H 0.221 0.779 27 H 0.152 0.848 28 H 0.156 0.844 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -15.719 -6.922 11.376 20.601 hybrid contribution 0.865 0.738 -1.495 1.878 sum -14.854 -6.184 9.881 18.881 Atomic orbital electron populations 1.22194 0.71973 1.05699 1.04818 1.48793 1.08017 1.03393 1.56144 1.22844 0.90572 0.94644 0.99311 1.19659 0.94253 0.93678 1.18406 1.19624 0.96273 1.02164 0.87768 1.24799 0.77228 0.74298 0.94309 1.90612 1.54170 1.50436 1.48829 1.86514 1.45204 1.63637 1.31651 1.23132 0.98186 0.98751 0.77405 1.18261 0.89256 0.91652 0.94818 1.21612 1.00215 0.98805 0.96938 1.21623 1.00894 0.98215 0.96935 1.21264 1.12609 1.31694 0.91742 0.93554 1.25491 0.95771 0.95109 1.00780 1.69948 1.17656 1.33425 1.32669 0.85620 0.77934 0.77841 0.80892 1.19900 1.20439 1.20546 1.24106 0.95579 0.95181 0.98529 1.77260 1.02338 1.09864 1.26395 0.88912 0.87150 0.89453 0.77874 0.84824 0.84423 0.93905 0.93696 0.94451 0.91927 0.96231 0.96342 0.91894 0.94480 0.92839 0.78856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 11.47 127.77 1.47 2.52 16 2 N -0.38 -8.14 4.01 -369.55 -1.48 -9.62 16 3 C 0.07 1.49 11.40 83.54 0.95 2.44 16 4 C -0.25 -5.78 4.59 -20.15 -0.09 -5.88 16 5 C -0.02 -0.43 6.30 29.10 0.18 -0.25 16 6 C 0.45 14.87 7.95 71.24 0.57 15.43 16 7 O -0.55 -22.19 15.78 21.98 0.35 -21.85 16 8 O -0.35 -13.46 8.88 -51.46 -0.46 -13.92 16 9 C 0.10 4.42 4.26 71.98 0.31 4.73 16 10 C 0.06 2.97 0.58 -52.93 -0.03 2.93 16 11 C -0.12 -5.59 8.11 71.98 0.58 -5.01 16 12 C -0.12 -5.69 8.11 71.98 0.58 -5.11 16 13 C -0.54 -29.02 8.01 25.60 0.21 -28.82 16 14 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 15 C 0.03 1.53 5.15 84.65 0.44 1.96 16 16 N -0.90 -48.91 9.35 21.45 0.20 -48.70 16 17 Si 0.95 42.84 29.54 68.60 2.03 44.87 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 C 0.05 1.29 11.96 85.23 1.02 2.31 16 22 N -0.34 -9.07 12.58 -57.02 -0.72 -9.79 16 23 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.20 2.60 8.06 -2.91 -0.02 2.58 16 27 H 0.13 2.26 8.14 -2.38 -0.02 2.24 16 28 H 0.14 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.04 1.98 8.13 -2.39 -0.02 1.96 16 30 H 0.04 2.05 8.13 -2.39 -0.02 2.03 16 31 H 0.04 1.57 7.68 -2.39 -0.02 1.55 16 32 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 33 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 3.28 6.07 -2.38 -0.01 3.26 16 36 H 0.04 1.58 7.68 -2.39 -0.02 1.56 16 37 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 38 H 0.19 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -69.81 322.28 7.14 -62.67 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 1.04 Total: 9.06 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 6.18 Total: -12.72 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -2.00 Total: -68.12 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -0.11 Total: -35.76 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -69.81 7.14 -62.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184775209.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.362 kcal (2) G-P(sol) polarization free energy of solvation -69.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds