Wall clock time and date at job start Mon Mar 30 2020 05:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 O 1.45208 * 109.46705 * 65.00425 * 3 2 1 14 14 C 1.34757 * 116.99831 * 269.99685 * 13 3 2 15 15 O 1.21523 * 119.99914 * 0.02562 * 14 13 3 16 16 C 1.47285 * 120.00085 * 179.97438 * 14 13 3 17 17 C 1.41336 * 126.42929 * 270.02769 * 16 14 13 18 18 C 1.50698 * 125.99427 * 0.02562 * 17 16 14 19 19 N 1.30431 * 108.01335 * 179.97438 * 17 16 14 20 20 N 1.39933 * 108.91886 * 0.02562 * 19 17 16 21 21 C 1.46500 * 125.74322 * 179.97438 * 20 19 17 22 22 C 1.34221 * 108.50848 * 359.73049 * 20 19 17 23 23 C 1.50700 * 126.29159 * 180.26691 * 22 20 19 24 24 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 26 26 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 27 27 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 28 28 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 29 29 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.47180 * 89.99856 * 18 17 16 31 31 H 1.09003 * 109.47248 * 209.99623 * 18 17 16 32 32 H 1.09001 * 109.47279 * 329.99824 * 18 17 16 33 33 H 1.08999 * 109.46854 * 89.97622 * 21 20 19 34 34 H 1.09000 * 109.46944 * 209.98023 * 21 20 19 35 35 H 1.08997 * 109.47050 * 329.97462 * 21 20 19 36 36 H 1.09009 * 109.47120 * 270.18729 * 23 22 20 37 37 H 1.08995 * 109.47373 * 30.18822 * 23 22 20 38 38 H 1.09003 * 109.47403 * 150.19019 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 8 1.6559 2.0916 1.2408 14 6 0.4681 2.7278 1.2562 15 8 -0.2278 2.7395 0.2601 16 6 0.0129 3.4081 2.4806 17 6 -0.7546 2.8381 3.5216 18 6 -1.2553 1.4178 3.5772 19 7 -0.9525 3.7565 4.4263 20 7 -0.3314 4.9407 4.0141 21 6 -0.3236 6.2054 4.7536 22 6 0.2606 4.7214 2.8296 23 6 1.0481 5.7245 2.0266 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 5.8770 0.4827 -2.1133 30 1 -0.5132 0.7899 4.0703 31 1 -2.1899 1.3836 4.1371 32 1 -1.4249 1.0524 2.5643 33 1 0.5410 6.2331 5.4168 34 1 -0.2694 7.0368 4.0509 35 1 -1.2367 6.2870 5.3433 36 1 0.3773 6.2569 1.3521 37 1 1.5251 6.4357 2.7009 38 1 1.8112 5.2064 1.4458 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187902679.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:42 Heat of formation + Delta-G solvation = -15.907696 kcal Electronic energy + Delta-G solvation = -20900.132903 eV Core-core repulsion = 17744.624981 eV Total energy + Delta-G solvation = -3155.507922 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.40387 -39.36579 -35.85481 -34.30519 -33.52562 -32.13781 -31.79710 -29.62757 -28.05650 -27.33259 -25.79506 -23.16434 -22.31077 -20.53971 -19.53824 -19.33071 -17.51715 -16.54411 -16.46963 -15.77017 -15.44906 -15.34652 -14.38020 -13.85811 -13.59039 -13.44040 -13.39137 -13.23216 -12.83157 -12.71377 -12.50599 -12.33738 -12.03158 -11.97016 -11.88091 -11.61736 -11.37973 -11.19338 -10.74322 -10.68133 -10.04091 -9.85976 -9.57859 -9.48067 -9.15116 -9.04882 -8.63345 -8.43801 -6.21293 -4.23258 1.70323 2.30817 2.52157 2.80639 3.20120 3.32281 3.35443 3.76626 4.28132 4.41424 4.50583 4.82827 4.93534 5.04230 5.08401 5.17879 5.30344 5.42546 5.59320 5.66263 5.78849 5.82562 5.84625 5.94204 5.95816 5.99842 6.08144 6.45962 6.56803 6.61338 6.71738 6.79012 6.86585 7.10688 7.39605 7.55691 7.64216 8.27397 8.67528 8.87340 9.36284 10.90714 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.026851 B = 0.005832 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.557162 B = 4799.721447 C = 5370.462304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.148 4.148 3 C 0.194 3.806 4 H 0.046 0.954 5 C -0.523 4.523 6 H 0.087 0.913 7 C 0.080 3.920 8 N -0.889 5.889 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.260 1.260 12 H -0.290 1.290 13 O -0.333 6.333 14 C 0.539 3.461 15 O -0.510 6.510 16 C -0.257 4.257 17 C 0.120 3.880 18 C -0.079 4.079 19 N -0.302 5.302 20 N -0.365 5.365 21 C 0.100 3.900 22 C 0.134 3.866 23 C -0.101 4.101 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.269 0.731 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.509 7.775 9.547 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.185 4.185 3 C 0.140 3.860 4 H 0.064 0.936 5 C -0.561 4.561 6 H 0.105 0.895 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.705 3.295 10 H -0.199 1.199 11 H -0.184 1.184 12 H -0.217 1.217 13 O -0.248 6.248 14 C 0.381 3.619 15 O -0.400 6.400 16 C -0.270 4.270 17 C -0.047 4.047 18 C -0.138 4.138 19 N -0.123 5.123 20 N -0.145 5.145 21 C -0.041 4.041 22 C 0.003 3.997 23 C -0.159 4.159 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.045 8.114 10.327 17.820 hybrid contribution -0.023 -0.621 -1.546 1.666 sum -12.068 7.493 8.781 16.700 Atomic orbital electron populations 1.21946 0.97000 1.00041 1.01921 1.22356 0.94386 0.99603 1.02193 1.20994 0.96296 0.88193 0.80477 0.93605 1.20796 0.87746 1.39791 1.07756 0.89541 1.24727 0.94919 0.95268 0.97364 1.69840 1.08498 1.44453 1.29799 0.87015 0.81070 0.80206 0.81253 1.19904 1.18430 1.21742 1.86681 1.33952 1.62116 1.42035 1.20000 0.80204 0.75722 0.86021 1.90781 1.55617 1.58546 1.35026 1.19184 1.13821 0.94160 0.99853 1.22255 0.95769 0.96481 0.90154 1.20323 1.01633 0.87966 1.03872 1.77049 1.21336 0.91085 1.22871 1.48036 1.40902 1.10279 1.15324 1.21899 1.04353 0.80816 0.97034 1.21307 0.95462 0.95238 0.87656 1.20621 0.99548 0.96703 0.99055 0.93869 0.93380 0.92535 0.91853 0.91177 0.92108 0.89628 0.90405 0.90115 0.90384 0.89294 0.89049 0.89471 0.90358 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.56 37.16 0.32 -2.68 16 2 C -0.15 -3.36 5.15 -26.73 -0.14 -3.50 16 3 C 0.19 4.90 1.84 -27.88 -0.05 4.85 16 4 H 0.05 1.22 6.22 -51.93 -0.32 0.89 16 5 C -0.52 -14.93 9.48 -34.44 -0.33 -15.26 16 6 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 7 C 0.08 2.29 5.45 -17.82 -0.10 2.20 16 8 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 9 Si 0.88 21.54 24.41 -169.99 -4.15 17.39 16 10 H -0.27 -6.44 6.83 56.52 0.39 -6.05 16 11 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 O -0.33 -7.83 9.82 -40.65 -0.40 -8.23 16 14 C 0.54 11.36 5.57 34.41 0.19 11.55 16 15 O -0.51 -11.59 14.29 -19.28 -0.28 -11.87 16 16 C -0.26 -4.67 6.00 -105.08 -0.63 -5.30 16 17 C 0.12 1.97 7.27 -82.01 -0.60 1.38 16 18 C -0.08 -1.07 10.28 36.00 0.37 -0.70 16 19 N -0.30 -4.73 12.50 33.90 0.42 -4.30 16 20 N -0.37 -4.93 3.98 -63.33 -0.25 -5.19 16 21 C 0.10 0.78 11.06 59.85 0.66 1.44 16 22 C 0.13 2.02 7.01 -81.59 -0.57 1.45 16 23 C -0.10 -1.20 9.70 36.01 0.35 -0.85 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.92 4.75 -51.93 -0.25 0.67 16 26 H 0.06 1.16 7.79 -51.93 -0.40 0.76 16 27 H 0.06 1.48 3.22 -51.93 -0.17 1.32 16 28 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.12 6.70 -51.93 -0.35 0.77 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.48 7.64 -51.93 -0.40 0.08 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 37 H 0.08 0.67 7.71 -51.93 -0.40 0.27 16 38 H 0.10 1.35 7.96 -51.93 -0.41 0.94 16 LS Contribution 312.13 15.07 4.70 4.70 Total: -1.00 -34.04 312.13 -4.96 -39.00 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -5.27 Total: -0.26 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -0.52 Total: -5.42 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.95 Total: -35.32 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.67 Total: -20.10 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.15 Total: 17.39 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.04 -4.96 -39.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187902679.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.095 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds