Wall clock time and date at job start Mon Mar 30 2020 05:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47392 * 2 1 4 4 H 1.09004 * 109.47118 * 305.00121 * 3 2 1 5 5 C 1.50698 * 109.47390 * 184.99653 * 3 2 1 6 6 H 1.08002 * 120.00066 * 239.99873 * 5 3 2 7 7 C 1.37876 * 119.99897 * 59.99903 * 5 3 2 8 8 N 1.31520 * 119.99848 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00165 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46990 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46890 * 120.00296 * 9 7 5 12 12 H 1.48494 * 109.47213 * 240.00224 * 9 7 5 13 13 O 1.45208 * 109.47254 * 64.99700 * 3 2 1 14 14 C 1.34226 * 117.00002 * 270.00282 * 13 3 2 15 15 O 1.20828 * 120.00030 * 359.97438 * 14 13 3 16 16 C 1.50696 * 119.99991 * 179.97438 * 14 13 3 17 17 C 1.53005 * 109.47260 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.47260 * 179.97438 * 17 16 14 19 19 C 1.35325 * 126.12378 * 85.02905 * 18 17 16 20 20 C 1.39868 * 107.91737 * 180.24396 * 19 18 17 21 21 N 1.30842 * 108.20327 * 359.55203 * 20 19 18 22 22 N 1.34941 * 126.13067 * 265.00771 * 18 17 16 23 23 C 1.46498 * 126.04014 * 359.97438 * 22 18 17 24 24 H 1.08997 * 109.47242 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47058 * 300.00106 * 1 2 3 26 26 H 1.09000 * 109.46857 * 59.99934 * 1 2 3 27 27 H 1.09001 * 109.47497 * 239.99589 * 2 1 3 28 28 H 1.09003 * 109.46740 * 119.99537 * 2 1 3 29 29 H 0.96998 * 120.00101 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.46733 * 60.00160 * 16 14 13 31 31 H 1.08995 * 109.47496 * 300.00630 * 16 14 13 32 32 H 1.09002 * 109.46948 * 60.00498 * 17 16 14 33 33 H 1.08998 * 109.46871 * 300.00528 * 17 16 14 34 34 H 1.08002 * 126.03725 * 359.97438 * 19 18 17 35 35 H 1.08007 * 125.89524 * 179.73435 * 20 19 18 36 36 H 1.08994 * 109.47427 * 90.00207 * 23 22 18 37 37 H 1.08999 * 109.47247 * 210.00793 * 23 22 18 38 38 H 1.09007 * 109.46720 * 330.00755 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1237 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8783 -1.2278 8 7 3.4062 0.3373 -2.1732 9 14 6.0050 0.8811 -1.3816 10 1 6.5987 1.5461 -0.1941 11 1 6.4970 -0.5176 -1.4628 12 1 6.3991 1.6165 -2.6100 13 8 1.6559 2.0917 1.2407 14 6 0.4727 2.7255 1.2559 15 8 -0.2188 2.7378 0.2652 16 6 0.0070 3.4217 2.5086 17 6 -1.3612 4.0596 2.2590 18 6 -1.8272 4.7553 3.5119 19 6 -1.5071 6.0141 3.8915 20 6 -2.1402 6.2695 5.1123 21 7 -2.8238 5.2057 5.4486 22 7 -2.6388 4.2348 4.4560 23 6 -3.2241 2.8919 4.4444 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 3.8293 -0.0612 -2.9498 30 1 0.7240 4.1959 2.7820 31 1 -0.0719 2.6972 3.3191 32 1 -2.0784 3.2857 1.9854 33 1 -1.2817 4.7842 1.4486 34 1 -0.8714 6.6989 3.3499 35 1 -2.0780 7.1874 5.6781 36 1 -2.5504 2.1975 4.9464 37 1 -4.1821 2.9085 4.9642 38 1 -3.3754 2.5704 3.4139 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188090666.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:53 Heat of formation + Delta-G solvation = -26.569943 kcal Electronic energy + Delta-G solvation = -20081.629374 eV Core-core repulsion = 16925.659103 eV Total energy + Delta-G solvation = -3155.970271 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.33428 -39.66752 -36.07436 -34.09712 -33.52837 -33.03915 -31.39821 -29.48683 -27.34393 -26.84244 -24.97018 -23.12127 -21.23933 -20.77567 -19.71554 -19.39305 -17.33048 -16.75207 -16.33738 -15.81333 -15.66901 -15.17492 -14.55163 -14.45115 -14.06834 -13.59527 -13.11095 -12.91435 -12.84800 -12.58196 -12.51174 -12.22463 -11.86115 -11.50354 -11.33394 -11.21399 -11.12736 -10.98884 -10.69453 -10.67685 -10.29700 -9.84693 -9.68304 -9.40914 -9.33938 -8.83351 -8.59818 -8.48483 -6.21365 -4.28377 1.74563 2.41128 2.74384 2.96140 3.21670 3.28797 3.33420 3.63326 4.29901 4.44488 4.61906 4.87816 4.91611 5.02214 5.05816 5.10846 5.25810 5.41468 5.53875 5.66376 5.74146 5.82804 5.97879 6.14345 6.17642 6.24154 6.41025 6.56735 6.82384 6.89672 6.92049 7.12378 7.22480 7.59251 7.61400 7.70522 7.91922 8.13013 8.60109 8.86405 9.37196 10.85428 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.034000 B = 0.003887 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.338066 B = 7202.218334 C = 7685.919376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.281 1.281 13 O -0.356 6.356 14 C 0.452 3.548 15 O -0.518 6.518 16 C -0.110 4.110 17 C -0.046 4.046 18 C 0.092 3.908 19 C -0.272 4.272 20 C 0.045 3.955 21 N -0.303 5.303 22 N -0.372 5.372 23 C 0.096 3.904 24 H 0.032 0.968 25 H 0.030 0.970 26 H 0.053 0.947 27 H 0.109 0.891 28 H 0.041 0.959 29 H 0.266 0.734 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.149 0.851 35 H 0.182 0.818 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.989 6.021 10.642 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.168 3.832 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.272 6.272 14 C 0.295 3.705 15 O -0.409 6.409 16 C -0.148 4.148 17 C -0.085 4.085 18 C -0.036 4.036 19 C -0.301 4.301 20 C -0.140 4.140 21 N -0.125 5.125 22 N -0.155 5.155 23 C -0.045 4.045 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.127 0.873 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.166 0.834 35 H 0.199 0.801 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.979 5.221 11.023 16.411 hybrid contribution 1.412 0.232 -0.809 1.643 sum -9.567 5.454 10.215 15.020 Atomic orbital electron populations 1.21853 0.98415 0.98956 1.00671 1.22022 0.92615 0.99419 1.03382 1.20687 0.95049 0.88748 0.78677 0.93452 1.21093 0.89727 1.38895 1.06244 0.91278 1.24888 0.99261 0.94748 0.95054 1.69897 1.35309 1.37896 1.09478 0.86236 0.83887 0.77898 0.78240 1.19467 1.20716 1.20733 1.86479 1.34195 1.62343 1.44164 1.23142 0.80939 0.77012 0.89385 1.90615 1.55589 1.58697 1.35999 1.21247 0.97095 1.00976 0.95532 1.20051 0.95808 1.00349 0.92290 1.21088 0.94873 0.94669 0.92948 1.21297 1.11279 0.97258 1.00298 1.23819 0.96302 0.97591 0.96297 1.77341 1.24680 0.98621 1.11831 1.48514 1.37872 1.12689 1.16380 1.21895 0.99706 0.78787 1.04127 0.94848 0.95056 0.92778 0.87319 0.94004 0.92435 0.87619 0.88590 0.89800 0.88042 0.83373 0.80086 0.90523 0.89325 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.57 37.16 0.32 -2.66 16 2 C -0.14 -3.30 5.49 -26.73 -0.15 -3.45 16 3 C 0.22 5.72 2.25 -27.89 -0.06 5.66 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 5 C -0.52 -14.37 8.90 -34.44 -0.31 -14.67 16 6 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.70 11.29 55.43 0.63 -24.07 16 9 Si 0.91 20.76 29.54 -169.99 -5.02 15.74 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 O -0.36 -8.11 9.81 -39.25 -0.38 -8.50 16 14 C 0.45 8.66 6.41 36.00 0.23 8.89 16 15 O -0.52 -11.03 13.13 -18.75 -0.25 -11.27 16 16 C -0.11 -1.49 5.79 -27.88 -0.16 -1.65 16 17 C -0.05 -0.55 4.79 -27.88 -0.13 -0.68 16 18 C 0.09 1.10 6.19 -82.27 -0.51 0.59 16 19 C -0.27 -3.10 10.72 -40.01 -0.43 -3.53 16 20 C 0.05 0.51 12.03 -17.36 -0.21 0.30 16 21 N -0.30 -3.97 12.58 30.63 0.39 -3.58 16 22 N -0.37 -4.46 4.01 -63.89 -0.26 -4.72 16 23 C 0.10 0.82 11.27 59.85 0.67 1.50 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.03 0.62 6.06 -51.93 -0.31 0.30 16 26 H 0.05 1.20 7.80 -51.93 -0.40 0.79 16 27 H 0.11 2.87 5.95 -51.93 -0.31 2.56 16 28 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 0.98 6.90 -51.93 -0.36 0.62 16 33 H 0.10 1.24 8.10 -51.93 -0.42 0.82 16 34 H 0.15 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.18 1.40 8.06 -52.48 -0.42 0.98 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.65 6.97 -51.92 -0.36 0.29 16 LS Contribution 319.39 15.07 4.81 4.81 Total: -1.00 -31.65 319.39 -6.38 -38.03 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.47 Total: 1.68 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -0.83 Total: -8.11 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.75 Total: -32.37 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.63 Total: -19.77 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.65 -6.38 -38.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188090666.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.456 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds