Wall clock time and date at job start Mon Mar 30 2020 05:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47392 * 2 1 4 4 H 1.09004 * 109.47118 * 305.00121 * 3 2 1 5 5 C 1.50698 * 109.47390 * 184.99653 * 3 2 1 6 6 H 1.08002 * 120.00066 * 239.99873 * 5 3 2 7 7 C 1.37876 * 119.99897 * 59.99903 * 5 3 2 8 8 N 1.31520 * 119.99848 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00165 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46990 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46890 * 120.00296 * 9 7 5 12 12 H 1.48494 * 109.47213 * 240.00224 * 9 7 5 13 13 O 1.45208 * 109.47254 * 64.99700 * 3 2 1 14 14 C 1.34226 * 117.00002 * 270.00282 * 13 3 2 15 15 O 1.20828 * 120.00030 * 359.97438 * 14 13 3 16 16 C 1.50696 * 119.99991 * 179.97438 * 14 13 3 17 17 C 1.53005 * 109.47260 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.47260 * 179.97438 * 17 16 14 19 19 C 1.35325 * 126.12378 * 85.02905 * 18 17 16 20 20 C 1.39868 * 107.91737 * 180.24396 * 19 18 17 21 21 N 1.30842 * 108.20327 * 359.55203 * 20 19 18 22 22 N 1.34941 * 126.13067 * 265.00771 * 18 17 16 23 23 C 1.46498 * 126.04014 * 359.97438 * 22 18 17 24 24 H 1.08997 * 109.47242 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47058 * 300.00106 * 1 2 3 26 26 H 1.09000 * 109.46857 * 59.99934 * 1 2 3 27 27 H 1.09001 * 109.47497 * 239.99589 * 2 1 3 28 28 H 1.09003 * 109.46740 * 119.99537 * 2 1 3 29 29 H 0.96998 * 120.00101 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.46733 * 60.00160 * 16 14 13 31 31 H 1.08995 * 109.47496 * 300.00630 * 16 14 13 32 32 H 1.09002 * 109.46948 * 60.00498 * 17 16 14 33 33 H 1.08998 * 109.46871 * 300.00528 * 17 16 14 34 34 H 1.08002 * 126.03725 * 359.97438 * 19 18 17 35 35 H 1.08007 * 125.89524 * 179.73435 * 20 19 18 36 36 H 1.08994 * 109.47427 * 90.00207 * 23 22 18 37 37 H 1.08999 * 109.47247 * 210.00793 * 23 22 18 38 38 H 1.09007 * 109.46720 * 330.00755 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1237 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8783 -1.2278 8 7 3.4062 0.3373 -2.1732 9 14 6.0050 0.8811 -1.3816 10 1 6.5987 1.5461 -0.1941 11 1 6.4970 -0.5176 -1.4628 12 1 6.3991 1.6165 -2.6100 13 8 1.6559 2.0917 1.2407 14 6 0.4727 2.7255 1.2559 15 8 -0.2188 2.7378 0.2652 16 6 0.0070 3.4217 2.5086 17 6 -1.3612 4.0596 2.2590 18 6 -1.8272 4.7553 3.5119 19 6 -1.5071 6.0141 3.8915 20 6 -2.1402 6.2695 5.1123 21 7 -2.8238 5.2057 5.4486 22 7 -2.6388 4.2348 4.4560 23 6 -3.2241 2.8919 4.4444 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 3.8293 -0.0612 -2.9498 30 1 0.7240 4.1959 2.7820 31 1 -0.0719 2.6972 3.3191 32 1 -2.0784 3.2857 1.9854 33 1 -1.2817 4.7842 1.4486 34 1 -0.8714 6.6989 3.3499 35 1 -2.0780 7.1874 5.6781 36 1 -2.5504 2.1975 4.9464 37 1 -4.1821 2.9085 4.9642 38 1 -3.3754 2.5704 3.4139 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188090666.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:52 Heat of formation + Delta-G solvation = -44.743495 kcal Electronic energy + Delta-G solvation = -20082.417439 eV Core-core repulsion = 16925.659103 eV Total energy + Delta-G solvation = -3156.758336 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.20768 -41.30546 -37.78996 -35.48638 -35.15022 -33.89464 -33.30923 -30.54694 -29.25041 -27.58113 -26.24527 -24.96174 -22.45445 -22.05645 -21.19507 -20.54219 -18.90232 -18.53419 -17.56387 -17.35809 -16.98411 -16.48808 -16.07843 -15.53188 -15.14637 -14.85278 -14.67679 -14.38572 -13.89368 -13.74843 -13.43581 -13.31969 -13.28187 -13.18285 -13.06843 -12.94808 -12.79470 -12.52491 -12.18327 -12.12016 -11.73927 -11.58591 -11.42295 -11.22192 -10.79728 -10.51344 -10.23581 -9.46363 -8.26781 -6.43121 0.85668 1.41020 1.42545 1.43654 1.56496 1.63432 1.87764 2.13714 2.44417 3.03060 3.58221 3.73624 3.84250 3.92824 4.19087 4.36015 4.38073 4.40097 4.42313 4.47218 4.59088 4.63507 4.65298 4.83251 4.86747 4.89014 5.00746 5.11239 5.23839 5.27773 5.42375 5.53645 5.69748 5.77139 6.01303 6.08172 6.18027 6.62534 6.76246 7.03837 7.29315 8.79903 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.034000 B = 0.003887 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.338066 B = 7202.218334 C = 7685.919376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.131 4.131 3 C 0.225 3.775 4 H 0.009 0.991 5 C -0.550 4.550 6 H 0.064 0.936 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.978 3.022 10 H -0.265 1.265 11 H -0.273 1.273 12 H -0.276 1.276 13 O -0.367 6.367 14 C 0.447 3.553 15 O -0.542 6.542 16 C -0.095 4.095 17 C -0.035 4.035 18 C 0.083 3.917 19 C -0.279 4.279 20 C 0.043 3.957 21 N -0.333 5.333 22 N -0.379 5.379 23 C 0.087 3.913 24 H 0.060 0.940 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.270 0.730 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.163 0.837 35 H 0.210 0.790 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.819 6.289 11.804 16.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.169 4.169 3 C 0.171 3.829 4 H 0.027 0.973 5 C -0.588 4.588 6 H 0.083 0.917 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.802 3.198 10 H -0.189 1.189 11 H -0.198 1.198 12 H -0.202 1.202 13 O -0.283 6.283 14 C 0.292 3.708 15 O -0.433 6.433 16 C -0.133 4.133 17 C -0.074 4.074 18 C -0.045 4.045 19 C -0.308 4.308 20 C -0.142 4.142 21 N -0.155 5.155 22 N -0.162 5.162 23 C -0.053 4.053 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.181 0.819 35 H 0.227 0.773 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.834 5.491 12.201 17.216 hybrid contribution 1.288 0.195 -1.162 1.746 sum -9.546 5.686 11.039 15.663 Atomic orbital electron populations 1.21705 0.96002 1.00597 1.00300 1.21870 0.94746 0.98101 1.02221 1.20350 0.94376 0.89338 0.78793 0.97318 1.21388 0.90804 1.39788 1.06791 0.91738 1.25768 1.04047 0.93943 0.94423 1.70015 1.37274 1.38032 1.09866 0.85199 0.77987 0.78271 0.78353 1.18858 1.19778 1.20180 1.86467 1.36334 1.63087 1.42459 1.24220 0.79447 0.76166 0.90959 1.90607 1.55835 1.59343 1.37495 1.21308 0.98052 1.01236 0.92720 1.19913 0.94878 1.00238 0.92402 1.21064 0.95437 0.95066 0.92902 1.21612 1.11340 0.97376 1.00518 1.24343 0.95345 0.98128 0.96366 1.77304 1.25810 0.99543 1.12818 1.48789 1.37877 1.13434 1.16055 1.22151 1.00324 0.77703 1.05168 0.92141 0.93974 0.94502 0.89766 0.93689 0.92088 0.86009 0.86611 0.89551 0.88400 0.81945 0.77311 0.89573 0.88422 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.35 8.57 71.98 0.62 -4.74 16 2 C -0.13 -6.43 5.49 30.59 0.17 -6.27 16 3 C 0.22 11.91 2.25 29.85 0.07 11.98 16 4 H 0.01 0.54 7.16 -2.38 -0.02 0.52 16 5 C -0.55 -30.79 8.90 25.60 0.23 -30.56 16 6 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 7 C 0.02 0.98 5.29 84.65 0.45 1.43 16 8 N -0.91 -51.60 11.29 21.45 0.24 -51.36 16 9 Si 0.98 42.41 29.54 68.60 2.03 44.44 16 10 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 12 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 13 O -0.37 -16.79 9.81 -51.38 -0.50 -17.29 16 14 C 0.45 16.89 6.41 71.23 0.46 17.35 16 15 O -0.54 -23.13 13.13 21.96 0.29 -22.84 16 16 C -0.10 -2.39 5.79 29.85 0.17 -2.21 16 17 C -0.04 -0.79 4.79 29.85 0.14 -0.64 16 18 C 0.08 1.83 6.19 41.41 0.26 2.09 16 19 C -0.28 -5.79 10.72 21.99 0.24 -5.55 16 20 C 0.04 0.87 12.03 85.23 1.02 1.90 16 21 N -0.33 -8.17 12.58 -57.02 -0.72 -8.89 16 22 N -0.38 -8.42 4.01 -356.04 -1.43 -9.85 16 23 C 0.09 1.33 11.27 127.77 1.44 2.77 16 24 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.04 1.62 6.06 -2.39 -0.01 1.61 16 26 H 0.04 1.63 7.80 -2.39 -0.02 1.61 16 27 H 0.08 4.55 5.95 -2.39 -0.01 4.54 16 28 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 30 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.09 1.88 6.90 -2.39 -0.02 1.86 16 33 H 0.10 2.27 8.10 -2.39 -0.02 2.25 16 34 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.21 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.10 1.28 6.97 -2.38 -0.02 1.27 16 Total: -1.00 -68.60 319.39 6.21 -62.39 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 1.05 Total: 15.87 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 5.26 Total: -12.46 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: -1.90 Total: -70.10 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -0.22 Total: -40.13 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -68.60 6.21 -62.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188090666.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.642 kcal (2) G-P(sol) polarization free energy of solvation -68.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds