Wall clock time and date at job start Mon Mar 30 2020 05:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.47255 * 2 1 4 4 C 1.32996 * 119.99596 * 124.99786 * 3 2 1 5 5 C 1.47106 * 119.99668 * 179.97438 * 4 3 2 6 6 O 1.21620 * 119.99899 * 4.77645 * 5 4 3 7 7 N 1.34771 * 119.99990 * 185.04855 * 5 4 3 8 8 C 1.46961 * 120.59412 * 354.35573 * 7 5 4 9 9 C 1.53820 * 108.39842 * 124.75671 * 8 7 5 10 10 N 1.46965 * 108.57629 * 49.63970 * 9 8 7 11 11 C 1.34771 * 120.59044 * 124.63066 * 10 9 8 12 12 O 1.21691 * 119.99746 * 185.26049 * 11 10 9 13 13 C 1.46373 * 120.00688 * 5.25529 * 11 10 9 14 14 H 1.08004 * 119.99312 * 354.98941 * 13 11 10 15 15 C 1.40044 * 120.00212 * 174.99086 * 13 11 10 16 16 N 1.30671 * 120.00451 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99777 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47200 * 59.99796 * 17 15 13 19 19 H 1.48502 * 109.47242 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47318 * 299.99349 * 17 15 13 21 21 C 1.46963 * 118.81211 * 304.64309 * 10 9 8 22 22 C 1.46965 * 120.59368 * 174.63367 * 7 5 4 23 23 H 1.08997 * 109.47521 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46987 * 300.00037 * 1 2 3 25 25 H 1.09002 * 109.46753 * 59.99726 * 1 2 3 26 26 H 1.08997 * 109.46745 * 239.99904 * 2 1 3 27 27 H 1.09002 * 109.46753 * 120.00273 * 2 1 3 28 28 H 1.07994 * 120.00246 * 305.00131 * 3 2 1 29 29 H 1.07994 * 120.00158 * 0.02562 * 4 3 2 30 30 H 1.09000 * 109.61078 * 244.54147 * 8 7 5 31 31 H 1.09003 * 109.61178 * 5.05062 * 8 7 5 32 32 H 1.09003 * 109.74054 * 289.84938 * 9 8 7 33 33 H 1.08998 * 109.53072 * 169.30590 * 9 8 7 34 34 H 0.96996 * 120.00080 * 179.97438 * 16 15 13 35 35 H 1.09002 * 109.61062 * 295.49007 * 21 10 9 36 36 H 1.08997 * 109.74942 * 175.06093 * 21 10 9 37 37 H 1.08998 * 109.61347 * 354.94852 * 22 7 5 38 38 H 1.09003 * 109.60951 * 115.46198 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8769 1.8275 0.9435 5 6 3.3677 3.2142 0.9432 6 8 2.9355 4.0121 0.1334 7 7 4.3003 3.5991 1.8367 8 6 4.7461 2.6818 2.8948 9 6 6.2760 2.5480 2.8086 10 7 6.8610 3.8947 2.7460 11 6 7.7930 4.2799 3.6401 12 8 8.2004 5.4266 3.6386 13 6 8.3153 3.3190 4.6129 14 1 7.8968 2.3249 4.6681 15 6 9.3576 3.6888 5.4722 16 7 9.8643 4.8914 5.4051 17 14 10.0245 2.4622 6.7132 18 1 10.5535 1.2728 5.9985 19 1 11.1163 3.0945 7.4965 20 1 8.9345 2.0441 7.6309 21 6 6.4112 4.8140 1.6913 22 6 4.8854 4.9459 1.7741 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7066 2.1088 -0.7661 29 1 3.2029 1.1394 1.7094 30 1 4.4655 3.0828 3.8688 31 1 4.2833 1.7054 2.7514 32 1 6.5468 1.9895 1.9126 33 1 6.6468 2.0287 3.6923 34 1 10.5859 5.1475 6.0005 35 1 6.6916 4.4168 0.7158 36 1 6.8712 5.7918 1.8342 37 1 4.5146 5.4651 0.8904 38 1 4.6146 5.5044 2.6701 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219505097.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:51 Heat of formation + Delta-G solvation = -48.682965 kcal Electronic energy + Delta-G solvation = -20151.727584 eV Core-core repulsion = 16994.798420 eV Total energy + Delta-G solvation = -3156.929164 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.95033 -37.98565 -35.94165 -35.46012 -33.06570 -32.49110 -31.47986 -30.32507 -27.42740 -26.17165 -24.47196 -23.17800 -22.14284 -20.73992 -19.33891 -18.41869 -17.45420 -16.17641 -16.00489 -15.61247 -15.04100 -14.62124 -14.56408 -14.28407 -14.07942 -14.02507 -13.76076 -12.97872 -12.74945 -12.55927 -12.30431 -11.87047 -11.68849 -11.55055 -11.39942 -11.30991 -11.15846 -11.00568 -10.93151 -10.75167 -10.29604 -10.11497 -9.63815 -9.50395 -8.93685 -8.59577 -7.67385 -7.25985 -6.26793 -4.73066 1.35396 3.10414 3.14660 3.16949 3.18329 3.40501 4.02262 4.41253 4.47527 4.50063 4.71981 4.90453 4.99688 5.10016 5.28105 5.33031 5.42491 5.53497 5.57696 5.58979 5.64183 5.69322 5.87586 5.92984 5.95337 6.05741 6.27380 6.29137 6.34094 6.37188 6.52258 6.77326 7.37367 7.48132 7.61561 8.02630 8.24442 8.33724 8.94302 9.33111 10.49378 10.67770 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.028887 B = 0.004237 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.045363 B = 6606.116368 C = 7434.506399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 C -0.070 4.070 4 C -0.215 4.215 5 C 0.544 3.456 6 O -0.558 6.558 7 N -0.600 5.600 8 C 0.087 3.913 9 C 0.109 3.891 10 N -0.643 5.643 11 C 0.559 3.441 12 O -0.575 6.575 13 C -0.546 4.546 14 H 0.073 0.927 15 C 0.088 3.912 16 N -0.767 5.767 17 Si 0.908 3.092 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.267 1.267 21 C 0.108 3.892 22 C 0.099 3.901 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.125 0.875 29 H 0.130 0.870 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.105 0.895 34 H 0.270 0.730 35 H 0.046 0.954 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.422 -10.904 -6.127 18.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.140 4.140 3 C -0.090 4.090 4 C -0.236 4.236 5 C 0.334 3.666 6 O -0.439 6.439 7 N -0.332 5.332 8 C -0.036 4.036 9 C -0.017 4.017 10 N -0.382 5.382 11 C 0.365 3.635 12 O -0.458 6.458 13 C -0.582 4.582 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.395 5.395 17 Si 0.732 3.268 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.192 1.192 21 C -0.017 4.017 22 C -0.024 4.024 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.142 0.858 29 H 0.147 0.853 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.066 0.934 33 H 0.123 0.877 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.230 -9.672 -6.445 17.610 hybrid contribution 0.378 -0.720 0.706 1.077 sum -12.851 -10.392 -5.739 17.495 Atomic orbital electron populations 1.21714 0.94551 1.01950 1.02414 1.20787 0.96582 0.93528 1.03144 1.23729 0.92135 0.96895 0.96237 1.22781 1.02633 0.95768 1.02392 1.18602 0.79024 0.88415 0.80519 1.90739 1.58632 1.54610 1.39922 1.47984 1.39658 1.15460 1.30105 1.22494 0.96971 0.93492 0.90680 1.21889 0.90320 0.86765 1.02706 1.48179 1.44698 1.12655 1.32628 1.18284 0.77102 0.88294 0.79801 1.90600 1.61010 1.20659 1.73506 1.20912 1.19490 0.99032 1.18758 0.90913 1.25730 0.95529 0.95179 0.96812 1.69994 1.19602 1.17804 1.32103 0.86435 0.78896 0.80950 0.80511 1.19225 1.20531 1.19195 1.21508 0.91817 0.97206 0.91173 1.22088 0.94478 0.82916 1.02925 0.92218 0.92395 0.92345 0.90129 0.90919 0.85764 0.85285 0.90772 0.89414 0.93365 0.87676 0.91917 0.93555 0.88551 0.89018 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.10 -0.75 6.38 -27.88 -0.18 -0.93 16 3 C -0.07 -0.72 9.09 -36.13 -0.33 -1.05 16 4 C -0.22 -2.54 8.97 -37.80 -0.34 -2.88 16 5 C 0.54 8.61 7.63 -12.67 -0.10 8.51 16 6 O -0.56 -10.52 15.65 5.26 0.08 -10.44 16 7 N -0.60 -9.62 2.94 -173.60 -0.51 -10.13 16 8 C 0.09 1.25 6.54 -3.36 -0.02 1.23 16 9 C 0.11 1.88 6.50 -3.36 -0.02 1.85 16 10 N -0.64 -14.19 2.95 -173.87 -0.51 -14.71 16 11 C 0.56 15.43 7.61 -12.99 -0.10 15.33 16 12 O -0.58 -18.23 14.45 5.20 0.08 -18.15 16 13 C -0.55 -14.64 8.86 -35.63 -0.32 -14.96 16 14 H 0.07 1.73 5.67 -52.48 -0.30 1.44 16 15 C 0.09 2.36 5.50 -17.37 -0.10 2.27 16 16 N -0.77 -22.44 11.84 55.55 0.66 -21.78 16 17 Si 0.91 19.31 29.56 -169.99 -5.02 14.29 16 18 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 C 0.11 2.14 6.59 -3.60 -0.02 2.11 16 22 C 0.10 1.73 6.58 -3.60 -0.02 1.71 16 23 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.48 7.82 -51.93 -0.41 0.07 16 28 H 0.12 1.42 7.50 -52.49 -0.39 1.03 16 29 H 0.13 1.23 5.67 -52.49 -0.30 0.93 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.09 0.94 5.29 -51.93 -0.27 0.66 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.11 1.83 5.34 -51.93 -0.28 1.56 16 34 H 0.27 7.19 8.29 -40.82 -0.34 6.86 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.10 2.09 7.00 -51.93 -0.36 1.73 16 37 H 0.09 1.56 7.02 -51.93 -0.36 1.20 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 313.61 15.07 4.73 4.73 Total: -1.00 -34.77 313.61 -6.87 -41.64 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.19 Total: 1.98 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: -1.18 Total: 12.57 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.37 Total: -46.62 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: 0.16 Total: -28.59 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.77 -6.87 -41.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219505097.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.040 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds