Wall clock time and date at job start Mon Mar 30 2020 05:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.47255 * 2 1 4 4 C 1.32996 * 119.99596 * 124.99786 * 3 2 1 5 5 C 1.47106 * 119.99668 * 179.97438 * 4 3 2 6 6 O 1.21620 * 119.99899 * 4.77645 * 5 4 3 7 7 N 1.34771 * 119.99990 * 185.04855 * 5 4 3 8 8 C 1.46961 * 120.59412 * 354.35573 * 7 5 4 9 9 C 1.53820 * 108.39842 * 124.75671 * 8 7 5 10 10 N 1.46965 * 108.57629 * 49.63970 * 9 8 7 11 11 C 1.34771 * 120.59044 * 124.63066 * 10 9 8 12 12 O 1.21691 * 119.99746 * 185.26049 * 11 10 9 13 13 C 1.46373 * 120.00688 * 5.25529 * 11 10 9 14 14 H 1.08004 * 119.99312 * 354.98941 * 13 11 10 15 15 C 1.40044 * 120.00212 * 174.99086 * 13 11 10 16 16 N 1.30671 * 120.00451 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99777 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47200 * 59.99796 * 17 15 13 19 19 H 1.48502 * 109.47242 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47318 * 299.99349 * 17 15 13 21 21 C 1.46963 * 118.81211 * 304.64309 * 10 9 8 22 22 C 1.46965 * 120.59368 * 174.63367 * 7 5 4 23 23 H 1.08997 * 109.47521 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46987 * 300.00037 * 1 2 3 25 25 H 1.09002 * 109.46753 * 59.99726 * 1 2 3 26 26 H 1.08997 * 109.46745 * 239.99904 * 2 1 3 27 27 H 1.09002 * 109.46753 * 120.00273 * 2 1 3 28 28 H 1.07994 * 120.00246 * 305.00131 * 3 2 1 29 29 H 1.07994 * 120.00158 * 0.02562 * 4 3 2 30 30 H 1.09000 * 109.61078 * 244.54147 * 8 7 5 31 31 H 1.09003 * 109.61178 * 5.05062 * 8 7 5 32 32 H 1.09003 * 109.74054 * 289.84938 * 9 8 7 33 33 H 1.08998 * 109.53072 * 169.30590 * 9 8 7 34 34 H 0.96996 * 120.00080 * 179.97438 * 16 15 13 35 35 H 1.09002 * 109.61062 * 295.49007 * 21 10 9 36 36 H 1.08997 * 109.74942 * 175.06093 * 21 10 9 37 37 H 1.08998 * 109.61347 * 354.94852 * 22 7 5 38 38 H 1.09003 * 109.60951 * 115.46198 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8769 1.8275 0.9435 5 6 3.3677 3.2142 0.9432 6 8 2.9355 4.0121 0.1334 7 7 4.3003 3.5991 1.8367 8 6 4.7461 2.6818 2.8948 9 6 6.2760 2.5480 2.8086 10 7 6.8610 3.8947 2.7460 11 6 7.7930 4.2799 3.6401 12 8 8.2004 5.4266 3.6386 13 6 8.3153 3.3190 4.6129 14 1 7.8968 2.3249 4.6681 15 6 9.3576 3.6888 5.4722 16 7 9.8643 4.8914 5.4051 17 14 10.0245 2.4622 6.7132 18 1 10.5535 1.2728 5.9985 19 1 11.1163 3.0945 7.4965 20 1 8.9345 2.0441 7.6309 21 6 6.4112 4.8140 1.6913 22 6 4.8854 4.9459 1.7741 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7066 2.1088 -0.7661 29 1 3.2029 1.1394 1.7094 30 1 4.4655 3.0828 3.8688 31 1 4.2833 1.7054 2.7514 32 1 6.5468 1.9895 1.9126 33 1 6.6468 2.0287 3.6923 34 1 10.5859 5.1475 6.0005 35 1 6.6916 4.4168 0.7158 36 1 6.8712 5.7918 1.8342 37 1 4.5146 5.4651 0.8904 38 1 4.6146 5.5044 2.6701 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219505097.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:51 Heat of formation + Delta-G solvation = -72.504158 kcal Electronic energy + Delta-G solvation = -20152.760548 eV Core-core repulsion = 16994.798420 eV Total energy + Delta-G solvation = -3157.962128 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.27674 -39.68944 -37.57679 -36.29276 -34.83077 -34.44000 -32.77024 -31.27947 -29.12194 -27.89019 -25.54939 -24.49464 -23.48247 -21.99596 -20.73408 -19.71419 -18.83756 -17.99859 -17.43518 -17.14604 -16.39038 -16.24337 -15.89961 -15.74960 -15.37216 -14.96296 -14.78464 -14.51392 -14.28528 -13.61918 -13.50369 -13.25542 -13.11486 -13.08920 -12.76239 -12.67804 -12.34574 -12.31489 -12.19503 -12.00881 -11.94932 -11.82936 -10.90886 -10.87542 -10.39964 -10.02303 -9.79348 -9.00510 -8.28127 -6.83557 0.40809 1.43427 1.46563 1.58214 1.90771 2.25658 2.27631 2.47460 2.81432 3.50759 3.59486 3.90057 3.94333 4.01929 4.18546 4.22569 4.28581 4.46278 4.47960 4.49249 4.56549 4.67924 4.75401 4.81895 4.84669 5.06332 5.07966 5.16073 5.28472 5.38160 5.41859 5.53814 5.58624 5.71987 6.11905 6.30724 6.43281 6.88762 7.10641 7.39877 8.45655 8.67692 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.028887 B = 0.004237 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.045363 B = 6606.116368 C = 7434.506399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 C -0.050 4.050 4 C -0.231 4.231 5 C 0.539 3.461 6 O -0.597 6.597 7 N -0.604 5.604 8 C 0.095 3.905 9 C 0.103 3.897 10 N -0.646 5.646 11 C 0.540 3.460 12 O -0.633 6.633 13 C -0.566 4.566 14 H 0.102 0.898 15 C 0.027 3.973 16 N -0.825 5.825 17 Si 0.997 3.003 18 H -0.251 1.251 19 H -0.281 1.281 20 H -0.250 1.250 21 C 0.111 3.889 22 C 0.111 3.889 23 H 0.075 0.925 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.108 0.892 29 H 0.160 0.840 30 H 0.070 0.930 31 H 0.136 0.864 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.273 0.727 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.747 -14.877 -5.627 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.137 4.137 3 C -0.070 4.070 4 C -0.251 4.251 5 C 0.333 3.667 6 O -0.481 6.481 7 N -0.335 5.335 8 C -0.027 4.027 9 C -0.021 4.021 10 N -0.383 5.383 11 C 0.347 3.653 12 O -0.520 6.520 13 C -0.602 4.602 14 H 0.120 0.880 15 C -0.188 4.188 16 N -0.455 5.455 17 Si 0.816 3.184 18 H -0.175 1.175 19 H -0.206 1.206 20 H -0.174 1.174 21 C -0.013 4.013 22 C -0.013 4.013 23 H 0.094 0.906 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.125 0.875 29 H 0.177 0.823 30 H 0.088 0.912 31 H 0.153 0.847 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.611 -13.705 -5.974 20.905 hybrid contribution 0.694 0.521 0.408 0.959 sum -13.917 -13.185 -5.566 19.963 Atomic orbital electron populations 1.21730 0.94040 1.02912 1.02043 1.20861 0.96869 0.91321 1.04630 1.23976 0.90235 0.98260 0.94527 1.22744 1.04225 0.93718 1.04432 1.19320 0.78211 0.89820 0.79377 1.90720 1.59901 1.56103 1.41359 1.48050 1.39828 1.14837 1.30821 1.22559 0.94769 0.95388 0.90002 1.22157 0.92212 0.84150 1.03541 1.48053 1.43745 1.14774 1.31716 1.18756 0.77818 0.87859 0.80873 1.90551 1.63277 1.22856 1.75325 1.21486 1.19816 1.00129 1.18739 0.87995 1.27039 0.95458 0.97267 0.99006 1.70194 1.20653 1.20872 1.33751 0.85073 0.78246 0.77813 0.77219 1.17528 1.20605 1.17383 1.21485 0.93376 0.95562 0.90923 1.21777 0.92580 0.84386 1.02571 0.90611 0.92945 0.92648 0.88693 0.89273 0.87451 0.82267 0.91162 0.84673 0.91640 0.87586 0.91684 0.92590 0.91512 0.88852 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.89 71.98 0.71 -0.78 16 2 C -0.10 -1.06 6.38 29.85 0.19 -0.87 16 3 C -0.05 -0.89 9.09 24.52 0.22 -0.67 16 4 C -0.23 -4.71 8.97 23.43 0.21 -4.50 16 5 C 0.54 16.23 7.63 86.57 0.66 16.89 16 6 O -0.60 -22.34 15.65 -4.09 -0.06 -22.40 16 7 N -0.60 -18.54 2.94 -821.40 -2.42 -20.95 16 8 C 0.10 2.47 6.54 86.57 0.57 3.03 16 9 C 0.10 3.35 6.50 86.57 0.56 3.92 16 10 N -0.65 -28.81 2.95 -822.23 -2.42 -31.24 16 11 C 0.54 30.72 7.61 86.36 0.66 31.38 16 12 O -0.63 -42.29 14.45 -4.32 -0.06 -42.36 16 13 C -0.57 -30.38 8.86 24.83 0.22 -30.16 16 14 H 0.10 4.67 5.67 -2.91 -0.02 4.66 16 15 C 0.03 1.47 5.50 85.30 0.47 1.94 16 16 N -0.83 -49.89 11.84 21.83 0.26 -49.63 16 17 Si 1.00 39.00 29.56 68.60 2.03 41.03 16 18 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 19 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 20 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 21 C 0.11 4.56 6.59 86.42 0.57 5.13 16 22 C 0.11 3.94 6.58 86.42 0.57 4.51 16 23 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 25 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.09 0.72 7.82 -2.39 -0.02 0.70 16 28 H 0.11 2.30 7.50 -2.91 -0.02 2.28 16 29 H 0.16 2.19 5.67 -2.91 -0.02 2.17 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.14 2.22 5.29 -2.39 -0.01 2.21 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.11 3.43 5.34 -2.39 -0.01 3.42 16 34 H 0.27 15.06 8.29 -92.71 -0.77 14.30 16 35 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.07 3.12 7.00 -2.39 -0.02 3.10 16 37 H 0.09 3.27 7.02 -2.39 -0.02 3.26 16 38 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -79.98 313.61 4.00 -75.98 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 1.06 Total: 19.76 kcal Atomic # 6 Polarization: 24.20 SS G_CDS: 5.61 Total: 29.81 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -4.58 Total: -101.82 kcal Atomic # 8 Polarization: -64.63 SS G_CDS: -0.13 Total: -64.76 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -79.98 4.00 -75.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219505097.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.481 kcal (2) G-P(sol) polarization free energy of solvation -79.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds