Wall clock time and date at job start Mon Mar 30 2020 05:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32998 * 119.99535 * 2 1 4 4 C 1.47101 * 120.00315 * 353.10530 * 3 2 1 5 5 O 1.21612 * 120.00033 * 353.77118 * 4 3 2 6 6 N 1.34782 * 119.99782 * 173.49023 * 4 3 2 7 7 C 1.46499 * 119.99532 * 180.27933 * 6 4 3 8 8 C 1.53001 * 109.46569 * 180.02562 * 7 6 4 9 9 N 1.46507 * 109.46774 * 180.02562 * 8 7 6 10 10 C 1.34775 * 119.99672 * 179.97438 * 9 8 7 11 11 O 1.21685 * 120.00403 * 359.97438 * 10 9 8 12 12 C 1.46379 * 119.99998 * 179.97438 * 10 9 8 13 13 H 1.08007 * 119.99462 * 359.97438 * 12 10 9 14 14 C 1.40043 * 120.00332 * 179.97438 * 12 10 9 15 15 N 1.30676 * 119.99802 * 359.97438 * 14 12 10 16 16 Si 1.86792 * 120.00218 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47520 * 59.99502 * 16 14 12 18 18 H 1.48501 * 109.47422 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47155 * 299.99564 * 16 14 12 20 20 C 1.50690 * 120.00221 * 180.02562 * 2 1 3 21 21 C 1.53004 * 117.49810 * 8.74040 * 20 2 1 22 22 C 1.53002 * 117.49909 * 300.08674 * 20 2 1 23 23 H 1.08997 * 109.47510 * 84.53153 * 1 2 3 24 24 H 1.09003 * 109.47199 * 204.53668 * 1 2 3 25 25 H 1.09006 * 109.46966 * 324.52765 * 1 2 3 26 26 H 1.07999 * 119.99490 * 173.11084 * 3 2 1 27 27 H 0.96999 * 120.00064 * 0.27886 * 6 4 3 28 28 H 1.09000 * 109.47348 * 300.00042 * 7 6 4 29 29 H 1.08994 * 109.47665 * 60.00431 * 7 6 4 30 30 H 1.09001 * 109.47156 * 299.99362 * 8 7 6 31 31 H 1.08992 * 109.47800 * 59.99759 * 8 7 6 32 32 H 0.96999 * 120.00199 * 359.97438 * 9 8 7 33 33 H 0.97002 * 119.99940 * 180.02562 * 15 14 12 34 34 H 1.09000 * 115.55245 * 154.41153 * 20 2 1 35 35 H 1.08997 * 117.49936 * 0.02562 * 21 20 2 36 36 H 1.09006 * 117.49930 * 145.02050 * 21 20 2 37 37 H 1.09004 * 117.49766 * 214.98081 * 22 20 2 38 38 H 1.09000 * 117.49661 * 359.96947 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4443 2.4212 -0.1529 5 8 0.2521 2.4136 -0.3924 6 7 2.0980 3.5926 -0.0220 7 6 1.3721 4.8567 -0.1682 8 6 2.3400 6.0257 0.0252 9 7 1.6141 7.2899 -0.1205 10 6 2.2677 8.4612 0.0106 11 8 3.4607 8.4689 0.2503 12 6 1.5425 9.7244 -0.1355 13 1 0.4837 9.7176 -0.3487 14 6 2.2215 10.9415 0.0012 15 7 3.5024 10.9496 0.2597 16 14 1.2960 12.5534 -0.1845 17 1 0.2195 12.6265 0.8359 18 1 2.2349 13.6881 0.0051 19 1 0.6974 12.6270 -1.5416 20 6 2.2605 -1.3050 -0.0006 21 6 1.4521 -2.5874 -0.2074 22 6 2.0246 -2.2575 1.1733 23 1 -0.3634 0.0979 -1.0229 24 1 -0.3634 -0.9349 0.4268 25 1 -0.3633 0.8370 0.5964 26 1 3.2460 1.1552 0.1122 27 1 3.0490 3.5986 0.1691 28 1 0.9327 4.9102 -1.1643 29 1 0.5822 4.9109 0.5808 30 1 2.7798 5.9724 1.0211 31 1 3.1298 5.9715 -0.7240 32 1 0.6630 7.2839 -0.3112 33 1 3.9727 11.7927 0.3547 34 1 3.2637 -1.2685 -0.4253 35 1 0.3753 -2.4872 -0.3434 36 1 1.9236 -3.3948 -0.7679 37 1 2.8725 -2.8478 1.5207 38 1 1.3247 -1.9400 1.9462 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219519613.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:57 Heat of formation + Delta-G solvation = -41.695468 kcal Electronic energy + Delta-G solvation = -18880.767420 eV Core-core repulsion = 15724.141257 eV Total energy + Delta-G solvation = -3156.626163 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.92423 -38.24087 -37.37990 -35.26613 -33.32006 -33.02869 -32.23148 -29.10187 -27.55102 -26.01268 -24.25369 -22.76061 -22.17218 -20.74935 -19.63620 -18.75458 -17.32639 -17.00004 -16.39079 -15.57196 -15.48570 -15.14597 -14.82740 -14.26369 -14.18634 -13.90946 -13.49020 -13.13282 -13.05481 -12.36571 -12.34666 -12.18719 -11.85422 -11.60413 -11.28605 -11.24559 -11.20229 -11.13698 -10.82886 -10.81398 -10.47122 -10.26502 -9.62979 -9.25420 -8.86859 -8.83152 -7.67220 -7.58445 -6.20706 -4.66194 1.16300 3.15983 3.17394 3.19561 3.21087 3.24389 3.56287 4.10340 4.23456 4.45946 4.53459 4.56612 4.68271 4.84991 4.97541 5.04371 5.21872 5.27921 5.39481 5.43212 5.48117 5.61515 5.68613 5.73469 5.79820 5.80142 5.91529 6.27721 6.29721 6.39600 6.42862 6.56050 7.42074 7.57042 7.88145 8.02724 8.27630 8.29768 9.00574 9.48115 10.57198 10.75124 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.067067 B = 0.002523 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.394368 B =11097.009652 C =11417.990197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.003 4.003 3 C -0.226 4.226 4 C 0.544 3.456 5 O -0.544 6.544 6 N -0.721 5.721 7 C 0.111 3.889 8 C 0.123 3.877 9 N -0.765 5.765 10 C 0.555 3.445 11 O -0.581 6.581 12 C -0.544 4.544 13 H 0.068 0.932 14 C 0.087 3.913 15 N -0.768 5.768 16 Si 0.910 3.090 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.268 1.268 20 C -0.134 4.134 21 C -0.172 4.172 22 C -0.167 4.167 23 H 0.080 0.920 24 H 0.054 0.946 25 H 0.092 0.908 26 H 0.127 0.873 27 H 0.402 0.598 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.383 0.617 33 H 0.269 0.731 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.283 -23.132 0.053 23.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.005 4.005 3 C -0.246 4.246 4 C 0.334 3.666 5 O -0.424 6.424 6 N -0.372 5.372 7 C -0.013 4.013 8 C -0.003 4.003 9 N -0.422 5.422 10 C 0.359 3.641 11 O -0.464 6.464 12 C -0.581 4.581 13 H 0.087 0.913 14 C -0.133 4.133 15 N -0.397 5.397 16 Si 0.734 3.266 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.192 1.192 20 C -0.152 4.152 21 C -0.209 4.209 22 C -0.204 4.204 23 H 0.098 0.902 24 H 0.073 0.927 25 H 0.110 0.890 26 H 0.145 0.855 27 H 0.237 0.763 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.214 0.786 33 H 0.080 0.920 34 H 0.134 0.866 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.055 -22.982 0.101 23.185 hybrid contribution -0.217 0.828 -0.114 0.864 sum -3.272 -22.154 -0.013 22.394 Atomic orbital electron populations 1.21179 0.90786 1.02389 1.03789 1.21762 0.96156 0.92286 0.90254 1.22289 1.00379 0.91796 1.10185 1.18475 0.86920 0.84132 0.77076 1.90754 1.15076 1.87666 1.48889 1.45797 1.13120 1.05660 1.72668 1.21533 0.95318 0.82218 1.02255 1.20950 0.94265 0.84056 1.00990 1.46031 1.11563 1.04432 1.80172 1.18228 0.86845 0.82227 0.76773 1.90597 1.15696 1.86721 1.53370 1.20843 0.95984 0.89280 1.52036 0.91338 1.25718 0.94586 1.00337 0.92674 1.70013 1.08378 1.27230 1.34087 0.86402 0.79802 0.80852 0.79499 1.19252 1.20566 1.19246 1.21292 1.00221 0.88778 1.04882 1.23083 1.00535 0.97650 0.99652 1.23002 1.03732 1.01941 0.91706 0.90168 0.92730 0.88981 0.85529 0.76324 0.91180 0.91186 0.92825 0.92821 0.78575 0.92015 0.86568 0.87958 0.88272 0.88196 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 7.90 36.01 0.28 -1.00 16 2 C 0.00 -0.03 5.81 -101.17 -0.59 -0.61 16 3 C -0.23 -2.37 9.67 -37.81 -0.37 -2.74 16 4 C 0.54 7.37 7.61 -12.66 -0.10 7.27 16 5 O -0.54 -8.90 13.28 5.27 0.07 -8.83 16 6 N -0.72 -9.32 5.55 -61.49 -0.34 -9.66 16 7 C 0.11 1.67 5.79 -4.04 -0.02 1.64 16 8 C 0.12 2.28 5.79 -4.04 -0.02 2.26 16 9 N -0.77 -17.01 5.55 -61.72 -0.34 -17.35 16 10 C 0.56 15.81 7.75 -12.99 -0.10 15.71 16 11 O -0.58 -18.79 15.02 5.20 0.08 -18.72 16 12 C -0.54 -15.39 9.54 -35.63 -0.34 -15.73 16 13 H 0.07 1.77 7.85 -52.48 -0.41 1.35 16 14 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 15 N -0.77 -23.06 11.83 55.55 0.66 -22.41 16 16 Si 0.91 20.15 29.56 -169.99 -5.02 15.13 16 17 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 20 C -0.13 -0.99 6.01 -91.77 -0.55 -1.54 16 21 C -0.17 -1.06 9.77 -26.70 -0.26 -1.33 16 22 C -0.17 -1.04 10.10 -26.70 -0.27 -1.31 16 23 H 0.08 0.88 8.05 -51.93 -0.42 0.46 16 24 H 0.05 0.44 6.31 -51.93 -0.33 0.12 16 25 H 0.09 1.15 6.12 -51.93 -0.32 0.83 16 26 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 27 H 0.40 4.30 8.46 -40.82 -0.35 3.95 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.38 7.48 8.45 -40.82 -0.35 7.13 16 33 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 34 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.63 6.42 -51.93 -0.33 0.30 16 36 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -35.55 326.48 -7.85 -43.40 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -5.44 Total: 8.57 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -2.43 Total: 4.94 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.03 Total: -49.42 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: 0.15 Total: -27.54 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.55 -7.85 -43.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219519613.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.707 kcal (2) G-P(sol) polarization free energy of solvation -35.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds