Wall clock time and date at job start Mon Mar 30 2020 05:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32998 * 119.99535 * 2 1 4 4 C 1.47101 * 120.00315 * 353.10530 * 3 2 1 5 5 O 1.21612 * 120.00033 * 353.77118 * 4 3 2 6 6 N 1.34782 * 119.99782 * 173.49023 * 4 3 2 7 7 C 1.46499 * 119.99532 * 180.27933 * 6 4 3 8 8 C 1.53001 * 109.46569 * 180.02562 * 7 6 4 9 9 N 1.46507 * 109.46774 * 180.02562 * 8 7 6 10 10 C 1.34775 * 119.99672 * 179.97438 * 9 8 7 11 11 O 1.21685 * 120.00403 * 359.97438 * 10 9 8 12 12 C 1.46379 * 119.99998 * 179.97438 * 10 9 8 13 13 H 1.08007 * 119.99462 * 359.97438 * 12 10 9 14 14 C 1.40043 * 120.00332 * 179.97438 * 12 10 9 15 15 N 1.30676 * 119.99802 * 359.97438 * 14 12 10 16 16 Si 1.86792 * 120.00218 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47520 * 59.99502 * 16 14 12 18 18 H 1.48501 * 109.47422 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47155 * 299.99564 * 16 14 12 20 20 C 1.50690 * 120.00221 * 180.02562 * 2 1 3 21 21 C 1.53004 * 117.49810 * 8.74040 * 20 2 1 22 22 C 1.53002 * 117.49909 * 300.08674 * 20 2 1 23 23 H 1.08997 * 109.47510 * 84.53153 * 1 2 3 24 24 H 1.09003 * 109.47199 * 204.53668 * 1 2 3 25 25 H 1.09006 * 109.46966 * 324.52765 * 1 2 3 26 26 H 1.07999 * 119.99490 * 173.11084 * 3 2 1 27 27 H 0.96999 * 120.00064 * 0.27886 * 6 4 3 28 28 H 1.09000 * 109.47348 * 300.00042 * 7 6 4 29 29 H 1.08994 * 109.47665 * 60.00431 * 7 6 4 30 30 H 1.09001 * 109.47156 * 299.99362 * 8 7 6 31 31 H 1.08992 * 109.47800 * 59.99759 * 8 7 6 32 32 H 0.96999 * 120.00199 * 359.97438 * 9 8 7 33 33 H 0.97002 * 119.99940 * 180.02562 * 15 14 12 34 34 H 1.09000 * 115.55245 * 154.41153 * 20 2 1 35 35 H 1.08997 * 117.49936 * 0.02562 * 21 20 2 36 36 H 1.09006 * 117.49930 * 145.02050 * 21 20 2 37 37 H 1.09004 * 117.49766 * 214.98081 * 22 20 2 38 38 H 1.09000 * 117.49661 * 359.96947 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4443 2.4212 -0.1529 5 8 0.2521 2.4136 -0.3924 6 7 2.0980 3.5926 -0.0220 7 6 1.3721 4.8567 -0.1682 8 6 2.3400 6.0257 0.0252 9 7 1.6141 7.2899 -0.1205 10 6 2.2677 8.4612 0.0106 11 8 3.4607 8.4689 0.2503 12 6 1.5425 9.7244 -0.1355 13 1 0.4837 9.7176 -0.3487 14 6 2.2215 10.9415 0.0012 15 7 3.5024 10.9496 0.2597 16 14 1.2960 12.5534 -0.1845 17 1 0.2195 12.6265 0.8359 18 1 2.2349 13.6881 0.0051 19 1 0.6974 12.6270 -1.5416 20 6 2.2605 -1.3050 -0.0006 21 6 1.4521 -2.5874 -0.2074 22 6 2.0246 -2.2575 1.1733 23 1 -0.3634 0.0979 -1.0229 24 1 -0.3634 -0.9349 0.4268 25 1 -0.3633 0.8370 0.5964 26 1 3.2460 1.1552 0.1122 27 1 3.0490 3.5986 0.1691 28 1 0.9327 4.9102 -1.1643 29 1 0.5822 4.9109 0.5808 30 1 2.7798 5.9724 1.0211 31 1 3.1298 5.9715 -0.7240 32 1 0.6630 7.2839 -0.3112 33 1 3.9727 11.7927 0.3547 34 1 3.2637 -1.2685 -0.4253 35 1 0.3753 -2.4872 -0.3434 36 1 1.9236 -3.3948 -0.7679 37 1 2.8725 -2.8478 1.5207 38 1 1.3247 -1.9400 1.9462 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219519613.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:57 Heat of formation + Delta-G solvation = -67.986148 kcal Electronic energy + Delta-G solvation = -18881.907470 eV Core-core repulsion = 15724.141257 eV Total energy + Delta-G solvation = -3157.766213 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.96906 -39.48455 -38.82445 -36.69568 -34.85860 -34.27071 -34.10397 -30.57395 -28.76538 -27.78248 -25.21299 -23.53309 -23.20275 -22.05718 -21.34308 -19.68653 -19.13425 -18.00629 -17.55223 -17.09762 -16.82406 -16.44391 -15.95169 -15.75725 -15.66074 -15.35747 -14.49149 -14.39862 -14.33690 -13.85986 -13.83196 -13.11357 -12.93834 -12.83225 -12.75351 -12.58772 -12.55649 -12.46972 -12.21794 -12.05088 -11.84294 -11.33531 -10.92431 -10.69214 -10.24592 -9.92558 -9.75967 -9.55785 -8.30825 -6.87255 0.32164 1.41076 1.44326 1.56118 2.05435 2.23155 2.28268 2.45292 3.01278 3.24301 3.59056 3.59083 3.78054 3.87858 3.96250 4.09239 4.12696 4.15980 4.31211 4.43353 4.67706 4.75783 4.82699 4.89091 4.91166 5.00005 5.08547 5.15034 5.26035 5.31368 5.37742 5.52689 5.54993 5.84924 6.15850 6.22914 6.55630 6.85441 7.22780 7.48782 8.45328 8.64921 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.067067 B = 0.002523 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.394368 B =11097.009652 C =11417.990197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.006 3.994 3 C -0.239 4.239 4 C 0.540 3.460 5 O -0.578 6.578 6 N -0.716 5.716 7 C 0.130 3.870 8 C 0.130 3.870 9 N -0.755 5.755 10 C 0.538 3.462 11 O -0.631 6.631 12 C -0.573 4.573 13 H 0.089 0.911 14 C 0.027 3.973 15 N -0.821 5.821 16 Si 1.000 3.000 17 H -0.255 1.255 18 H -0.274 1.274 19 H -0.254 1.254 20 C -0.147 4.147 21 C -0.168 4.168 22 C -0.161 4.161 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.152 0.848 27 H 0.414 0.586 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.397 0.603 33 H 0.275 0.725 34 H 0.129 0.871 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.092 -24.041 -0.108 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.004 3.996 3 C -0.260 4.260 4 C 0.331 3.669 5 O -0.460 6.460 6 N -0.368 5.368 7 C 0.005 3.995 8 C 0.005 3.995 9 N -0.410 5.410 10 C 0.343 3.657 11 O -0.518 6.518 12 C -0.610 4.610 13 H 0.107 0.893 14 C -0.188 4.188 15 N -0.450 5.450 16 Si 0.819 3.181 17 H -0.178 1.178 18 H -0.199 1.199 19 H -0.178 1.178 20 C -0.165 4.165 21 C -0.205 4.205 22 C -0.198 4.198 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.170 0.830 27 H 0.251 0.749 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.231 0.769 33 H 0.085 0.915 34 H 0.146 0.854 35 H 0.119 0.881 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.888 -23.947 -0.065 24.261 hybrid contribution 0.010 0.978 -0.056 0.980 sum -3.879 -22.969 -0.120 23.294 Atomic orbital electron populations 1.21112 0.91559 1.02479 1.02875 1.22008 0.95895 0.93384 0.88341 1.22317 1.01450 0.90340 1.11849 1.19006 0.86671 0.84955 0.76225 1.90744 1.16597 1.88142 1.50525 1.45703 1.13680 1.04834 1.72607 1.21174 0.94289 0.81875 1.02148 1.20958 0.94585 0.83675 1.00289 1.45680 1.12271 1.04409 1.78679 1.18596 0.86493 0.84118 0.76531 1.90551 1.17712 1.87855 1.55661 1.21410 0.97160 0.90005 1.52401 0.89311 1.26994 0.95458 1.04959 0.91363 1.70176 1.10766 1.28888 1.35205 0.85044 0.78241 0.74632 0.80209 1.17849 1.19875 1.17842 1.21347 1.00753 0.87869 1.06483 1.23188 1.00459 0.97093 0.99770 1.23090 1.04127 1.01106 0.91442 0.91106 0.90609 0.91378 0.83033 0.74946 0.91266 0.91239 0.93557 0.93546 0.76891 0.91472 0.85362 0.88130 0.86759 0.86638 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 7.90 71.24 0.56 -1.93 16 2 C 0.01 0.10 5.81 -17.62 -0.10 0.00 16 3 C -0.24 -4.74 9.67 23.43 0.23 -4.51 16 4 C 0.54 14.41 7.61 86.57 0.66 15.07 16 5 O -0.58 -19.06 13.28 -4.07 -0.05 -19.11 16 6 N -0.72 -18.15 5.55 -466.71 -2.59 -20.74 16 7 C 0.13 3.87 5.79 86.38 0.50 4.37 16 8 C 0.13 4.86 5.79 86.38 0.50 5.36 16 9 N -0.75 -33.82 5.55 -467.40 -2.59 -36.41 16 10 C 0.54 31.27 7.75 86.36 0.67 31.94 16 11 O -0.63 -42.15 15.02 -4.30 -0.06 -42.21 16 12 C -0.57 -32.52 9.54 24.83 0.24 -32.28 16 13 H 0.09 4.49 7.85 -2.91 -0.02 4.47 16 14 C 0.03 1.53 5.50 85.30 0.47 2.00 16 15 N -0.82 -50.24 11.83 21.83 0.26 -49.98 16 16 Si 1.00 40.88 29.56 68.60 2.03 42.91 16 17 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 18 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 19 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 20 C -0.15 -1.83 6.01 -11.54 -0.07 -1.90 16 21 C -0.17 -1.66 9.77 30.62 0.30 -1.36 16 22 C -0.16 -1.59 10.10 30.62 0.31 -1.28 16 23 H 0.07 1.56 8.05 -2.39 -0.02 1.54 16 24 H 0.08 1.15 6.31 -2.39 -0.02 1.13 16 25 H 0.07 1.73 6.12 -2.38 -0.01 1.71 16 26 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 27 H 0.41 8.53 8.46 -92.71 -0.78 7.75 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 29 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.40 15.40 8.45 -92.71 -0.78 14.61 16 33 H 0.28 15.25 8.29 -92.71 -0.77 14.48 16 34 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.10 1.02 6.42 -2.39 -0.02 1.01 16 36 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -78.63 326.48 0.76 -77.87 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: -0.48 Total: 32.20 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 4.26 Total: 15.49 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -4.93 Total: -107.14 kcal Atomic # 8 Polarization: -61.21 SS G_CDS: -0.12 Total: -61.33 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -78.63 0.76 -77.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219519613.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.887 kcal (2) G-P(sol) polarization free energy of solvation -78.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds