Wall clock time and date at job start Mon Mar 30 2020 05:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32993 * 1 3 3 C 1.50701 * 120.00003 * 2 1 4 4 C 1.47101 * 119.99869 * 180.02562 * 2 1 3 5 5 O 1.21621 * 119.99352 * 260.57899 * 4 2 1 6 6 N 1.34773 * 120.00397 * 80.58079 * 4 2 1 7 7 C 1.46930 * 120.63184 * 174.83067 * 6 4 2 8 8 C 1.53196 * 108.89169 * 233.55984 * 7 6 4 9 9 C 1.53075 * 109.29515 * 305.57658 * 8 7 6 10 10 N 1.46495 * 109.43979 * 181.23581 * 9 8 7 11 11 C 1.34778 * 119.99606 * 84.80141 * 10 9 8 12 12 O 1.21686 * 120.00320 * 359.97438 * 11 10 9 13 13 C 1.46372 * 119.99605 * 180.02562 * 11 10 9 14 14 H 1.07999 * 120.00768 * 359.97438 * 13 11 10 15 15 C 1.40055 * 119.99772 * 179.97438 * 13 11 10 16 16 N 1.30674 * 120.00246 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 120.00024 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47147 * 59.99704 * 17 15 13 19 19 H 1.48502 * 109.47460 * 180.02562 * 17 15 13 20 20 H 1.48510 * 109.47335 * 300.00072 * 17 15 13 21 21 C 1.53045 * 109.65575 * 61.15238 * 9 8 7 22 22 C 1.46927 * 120.63100 * 354.85157 * 6 4 2 23 23 H 1.08000 * 120.00191 * 179.97438 * 1 2 3 24 24 H 1.08001 * 120.00423 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47136 * 275.05556 * 3 2 1 26 26 H 1.08998 * 109.47105 * 35.05222 * 3 2 1 27 27 H 1.08997 * 109.46777 * 155.05400 * 3 2 1 28 28 H 1.08997 * 109.58541 * 353.41932 * 7 6 4 29 29 H 1.09000 * 109.58439 * 113.69759 * 7 6 4 30 30 H 1.08999 * 109.49647 * 65.38691 * 8 7 6 31 31 H 1.08998 * 109.48876 * 185.48300 * 8 7 6 32 32 H 1.08998 * 109.34492 * 301.13390 * 9 8 7 33 33 H 0.96992 * 120.00486 * 264.79366 * 10 9 8 34 34 H 0.96996 * 119.99716 * 180.02562 * 16 15 13 35 35 H 1.09000 * 109.49465 * 178.74593 * 21 9 8 36 36 H 1.09004 * 109.52120 * 58.67072 * 21 9 8 37 37 H 1.09000 * 109.58567 * 246.15684 * 22 6 4 38 38 H 1.09001 * 109.58659 * 6.43917 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0834 1.3051 0.0000 4 6 2.0654 -1.2740 -0.0006 5 8 2.5187 -1.7147 1.0384 6 7 2.2369 -1.9526 -1.1523 7 6 3.0640 -3.1665 -1.1899 8 6 4.1228 -3.0115 -2.2861 9 6 3.4337 -2.6756 -3.6111 10 7 4.4410 -2.5557 -4.6679 11 6 4.8727 -3.6562 -5.3153 12 8 4.4260 -4.7494 -5.0216 13 6 5.8796 -3.5365 -6.3709 14 1 6.2764 -2.5665 -6.6313 15 6 6.3285 -4.6802 -7.0433 16 7 5.8489 -5.8541 -6.7279 17 14 7.6130 -4.5274 -8.3909 18 1 8.8520 -3.9322 -7.8286 19 1 7.9154 -5.8731 -8.9414 20 1 7.0925 -3.6554 -9.4744 21 6 2.6760 -1.3526 -3.4764 22 6 1.6009 -1.4924 -2.3942 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5401 0.9353 0.0004 25 1 2.1867 1.6650 -1.0237 26 1 1.5365 2.0404 0.5902 27 1 3.0720 1.1538 0.4334 28 1 3.5535 -3.3050 -0.2259 29 1 2.4357 -4.0300 -1.4080 30 1 4.8071 -2.2060 -2.0197 31 1 4.6791 -3.9432 -2.3887 32 1 2.7331 -3.4709 -3.8655 33 1 4.7973 -1.6845 -4.9018 34 1 6.1601 -6.6461 -7.1934 35 1 2.2049 -1.1048 -4.4275 36 1 3.3719 -0.5611 -3.1979 37 1 0.8537 -2.2192 -2.7131 38 1 1.1229 -0.5276 -2.2242 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219571576.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:37 Heat of formation + Delta-G solvation = -62.887804 kcal Electronic energy + Delta-G solvation = -20330.113450 eV Core-core repulsion = 17172.568318 eV Total energy + Delta-G solvation = -3157.545132 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.27992 -38.08203 -36.44010 -34.89852 -33.55198 -32.36648 -30.94178 -30.29974 -27.57242 -26.49307 -24.78987 -23.39202 -22.22048 -20.25511 -19.54451 -18.54169 -17.15668 -16.75005 -16.02049 -15.41629 -15.31938 -14.79461 -14.42845 -14.17107 -14.06363 -13.68118 -13.39413 -13.10678 -12.70140 -12.57176 -12.43020 -12.33933 -11.96415 -11.87074 -11.63778 -11.13162 -11.06961 -11.02348 -10.51237 -10.44189 -10.30327 -10.17365 -9.90306 -9.41766 -8.86600 -8.67907 -7.63512 -7.54161 -6.20295 -4.66317 1.59850 2.52487 3.04496 3.14287 3.19507 3.21130 4.08375 4.34030 4.55995 4.68260 4.71919 4.83424 5.15866 5.18715 5.21215 5.33468 5.40173 5.45757 5.54393 5.64402 5.67230 5.69358 5.82632 5.91685 5.98941 6.04950 6.11326 6.24696 6.29892 6.39238 6.69625 6.78158 7.37062 7.41326 7.90445 8.07825 8.09283 8.30688 9.00638 9.51144 10.58034 10.76540 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.043451 B = 0.003875 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.250657 B = 7224.262327 C = 7430.649922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.150 4.150 3 C -0.108 4.108 4 C 0.552 3.448 5 O -0.543 6.543 6 N -0.602 5.602 7 C 0.113 3.887 8 C -0.140 4.140 9 C 0.157 3.843 10 N -0.763 5.763 11 C 0.555 3.445 12 O -0.580 6.580 13 C -0.547 4.547 14 H 0.066 0.934 15 C 0.088 3.912 16 N -0.768 5.768 17 Si 0.907 3.093 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.268 1.268 21 C -0.140 4.140 22 C 0.111 3.889 23 H 0.103 0.897 24 H 0.114 0.886 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.379 0.621 34 H 0.269 0.731 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.886 12.966 8.028 17.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.153 4.153 3 C -0.165 4.165 4 C 0.340 3.660 5 O -0.421 6.421 6 N -0.335 5.335 7 C -0.009 4.009 8 C -0.180 4.180 9 C 0.050 3.950 10 N -0.417 5.417 11 C 0.359 3.641 12 O -0.463 6.463 13 C -0.584 4.584 14 H 0.084 0.916 15 C -0.132 4.132 16 N -0.396 5.396 17 Si 0.732 3.268 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.193 1.193 21 C -0.179 4.179 22 C -0.013 4.013 23 H 0.121 0.879 24 H 0.132 0.868 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.210 0.790 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.966 11.677 8.741 17.122 hybrid contribution 0.816 0.491 -0.877 1.295 sum -8.150 12.168 7.864 16.623 Atomic orbital electron populations 1.24280 0.94044 1.02874 0.98007 1.21636 0.95819 0.94911 1.02957 1.20728 1.00442 0.92620 1.02672 1.18640 0.79626 0.84308 0.83407 1.90802 1.50465 1.69384 1.31414 1.48214 1.49479 1.27291 1.08475 1.21692 0.92885 0.85647 1.00697 1.22358 0.97697 1.03231 0.94738 1.20426 0.91184 0.95795 0.87578 1.46191 1.45355 1.10497 1.39636 1.18201 0.82149 0.82142 0.81574 1.90596 1.60737 1.26265 1.68656 1.20860 1.23868 0.94191 1.19476 0.91562 1.25696 0.95937 0.94753 0.96778 1.70004 1.35803 0.98525 1.35303 0.86449 0.81247 0.77950 0.81174 1.19310 1.20567 1.19312 1.22204 0.98130 0.98917 0.98649 1.21767 0.95305 1.00604 0.83601 0.87860 0.86802 0.90647 0.90909 0.91357 0.89263 0.91159 0.92223 0.89707 0.90532 0.78960 0.92058 0.90198 0.91463 0.90931 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 13.33 28.91 0.39 -0.89 16 2 C -0.15 -1.58 4.07 -102.85 -0.42 -2.00 16 3 C -0.11 -0.91 10.02 36.01 0.36 -0.55 16 4 C 0.55 7.88 7.05 -12.67 -0.09 7.80 16 5 O -0.54 -9.83 16.54 5.26 0.09 -9.74 16 6 N -0.60 -8.18 2.97 -174.16 -0.52 -8.69 16 7 C 0.11 1.73 6.41 -3.71 -0.02 1.70 16 8 C -0.14 -2.43 5.66 -26.59 -0.15 -2.58 16 9 C 0.16 2.80 2.41 -67.87 -0.16 2.63 16 10 N -0.76 -16.21 5.07 -55.16 -0.28 -16.49 16 11 C 0.56 15.30 7.71 -12.99 -0.10 15.20 16 12 O -0.58 -18.17 14.68 5.20 0.08 -18.10 16 13 C -0.55 -15.17 9.54 -35.63 -0.34 -15.51 16 14 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 15 C 0.09 2.43 5.50 -17.36 -0.10 2.34 16 16 N -0.77 -22.76 11.83 55.55 0.66 -22.10 16 17 Si 0.91 19.92 29.56 -169.99 -5.02 14.89 16 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 C -0.14 -1.81 5.55 -26.61 -0.15 -1.96 16 22 C 0.11 1.24 6.28 -3.71 -0.02 1.22 16 23 H 0.10 0.86 8.05 -52.49 -0.42 0.44 16 24 H 0.11 0.66 8.06 -52.49 -0.42 0.24 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 27 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 28 H 0.09 1.42 7.04 -51.93 -0.37 1.06 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 32 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 33 H 0.38 7.12 8.58 -40.82 -0.35 6.77 16 34 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.77 5.87 -51.93 -0.30 0.47 16 LS Contribution 320.00 15.07 4.82 4.82 Total: -1.00 -35.14 320.00 -6.59 -41.74 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.60 Total: 6.28 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -0.81 Total: 7.40 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -0.14 Total: -47.28 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: 0.16 Total: -27.84 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.14 -6.59 -41.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219571576.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.153 kcal (2) G-P(sol) polarization free energy of solvation -35.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds