Wall clock time and date at job start Mon Mar 30 2020 05:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32993 * 1 3 3 C 1.50701 * 120.00003 * 2 1 4 4 C 1.47101 * 119.99869 * 180.02562 * 2 1 3 5 5 O 1.21621 * 119.99352 * 260.57899 * 4 2 1 6 6 N 1.34773 * 120.00397 * 80.58079 * 4 2 1 7 7 C 1.46930 * 120.63184 * 174.83067 * 6 4 2 8 8 C 1.53196 * 108.89169 * 233.55984 * 7 6 4 9 9 C 1.53075 * 109.29515 * 305.57658 * 8 7 6 10 10 N 1.46495 * 109.43979 * 181.23581 * 9 8 7 11 11 C 1.34778 * 119.99606 * 84.80141 * 10 9 8 12 12 O 1.21686 * 120.00320 * 359.97438 * 11 10 9 13 13 C 1.46372 * 119.99605 * 180.02562 * 11 10 9 14 14 H 1.07999 * 120.00768 * 359.97438 * 13 11 10 15 15 C 1.40055 * 119.99772 * 179.97438 * 13 11 10 16 16 N 1.30674 * 120.00246 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 120.00024 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47147 * 59.99704 * 17 15 13 19 19 H 1.48502 * 109.47460 * 180.02562 * 17 15 13 20 20 H 1.48510 * 109.47335 * 300.00072 * 17 15 13 21 21 C 1.53045 * 109.65575 * 61.15238 * 9 8 7 22 22 C 1.46927 * 120.63100 * 354.85157 * 6 4 2 23 23 H 1.08000 * 120.00191 * 179.97438 * 1 2 3 24 24 H 1.08001 * 120.00423 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47136 * 275.05556 * 3 2 1 26 26 H 1.08998 * 109.47105 * 35.05222 * 3 2 1 27 27 H 1.08997 * 109.46777 * 155.05400 * 3 2 1 28 28 H 1.08997 * 109.58541 * 353.41932 * 7 6 4 29 29 H 1.09000 * 109.58439 * 113.69759 * 7 6 4 30 30 H 1.08999 * 109.49647 * 65.38691 * 8 7 6 31 31 H 1.08998 * 109.48876 * 185.48300 * 8 7 6 32 32 H 1.08998 * 109.34492 * 301.13390 * 9 8 7 33 33 H 0.96992 * 120.00486 * 264.79366 * 10 9 8 34 34 H 0.96996 * 119.99716 * 180.02562 * 16 15 13 35 35 H 1.09000 * 109.49465 * 178.74593 * 21 9 8 36 36 H 1.09004 * 109.52120 * 58.67072 * 21 9 8 37 37 H 1.09000 * 109.58567 * 246.15684 * 22 6 4 38 38 H 1.09001 * 109.58659 * 6.43917 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0834 1.3051 0.0000 4 6 2.0654 -1.2740 -0.0006 5 8 2.5187 -1.7147 1.0384 6 7 2.2369 -1.9526 -1.1523 7 6 3.0640 -3.1665 -1.1899 8 6 4.1228 -3.0115 -2.2861 9 6 3.4337 -2.6756 -3.6111 10 7 4.4410 -2.5557 -4.6679 11 6 4.8727 -3.6562 -5.3153 12 8 4.4260 -4.7494 -5.0216 13 6 5.8796 -3.5365 -6.3709 14 1 6.2764 -2.5665 -6.6313 15 6 6.3285 -4.6802 -7.0433 16 7 5.8489 -5.8541 -6.7279 17 14 7.6130 -4.5274 -8.3909 18 1 8.8520 -3.9322 -7.8286 19 1 7.9154 -5.8731 -8.9414 20 1 7.0925 -3.6554 -9.4744 21 6 2.6760 -1.3526 -3.4764 22 6 1.6009 -1.4924 -2.3942 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5401 0.9353 0.0004 25 1 2.1867 1.6650 -1.0237 26 1 1.5365 2.0404 0.5902 27 1 3.0720 1.1538 0.4334 28 1 3.5535 -3.3050 -0.2259 29 1 2.4357 -4.0300 -1.4080 30 1 4.8071 -2.2060 -2.0197 31 1 4.6791 -3.9432 -2.3887 32 1 2.7331 -3.4709 -3.8655 33 1 4.7973 -1.6845 -4.9018 34 1 6.1601 -6.6461 -7.1934 35 1 2.2049 -1.1048 -4.4275 36 1 3.3719 -0.5611 -3.1979 37 1 0.8537 -2.2192 -2.7131 38 1 1.1229 -0.5276 -2.2242 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219571576.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:37 Heat of formation + Delta-G solvation = -88.745602 kcal Electronic energy + Delta-G solvation = -20331.234729 eV Core-core repulsion = 17172.568318 eV Total energy + Delta-G solvation = -3158.666410 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.43024 -39.73001 -38.07833 -35.79971 -35.14792 -34.43505 -32.15519 -31.87873 -28.47958 -28.16198 -26.14686 -24.59097 -23.41883 -21.77618 -21.22743 -19.72368 -18.93795 -17.87082 -17.43146 -16.99563 -16.46514 -16.42220 -15.91875 -15.48839 -15.25930 -14.93662 -14.46158 -14.33806 -14.18407 -13.92318 -13.68207 -13.43771 -13.29656 -13.17668 -12.76266 -12.72635 -12.60176 -12.59799 -12.29535 -12.06427 -11.84916 -11.62973 -10.97209 -10.90866 -10.15683 -9.96261 -9.71870 -9.43916 -8.27485 -6.84109 0.88894 1.40477 1.43613 1.44574 1.55176 1.98564 2.25127 2.49044 3.07862 3.44522 3.61712 3.70773 3.98266 4.02451 4.08742 4.16754 4.25788 4.44231 4.53592 4.60315 4.69003 4.70889 4.81117 4.84000 4.86478 4.96093 5.08575 5.11927 5.25797 5.32750 5.38763 5.48177 5.57758 5.90428 6.26131 6.30549 6.32009 6.88438 6.99610 7.58556 8.52004 8.69508 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.043451 B = 0.003875 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.250657 B = 7224.262327 C = 7430.649922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.177 4.177 3 C -0.103 4.103 4 C 0.548 3.452 5 O -0.591 6.591 6 N -0.601 5.601 7 C 0.122 3.878 8 C -0.129 4.129 9 C 0.154 3.846 10 N -0.750 5.750 11 C 0.540 3.460 12 O -0.629 6.629 13 C -0.576 4.576 14 H 0.087 0.913 15 C 0.030 3.970 16 N -0.822 5.822 17 Si 0.996 3.004 18 H -0.256 1.256 19 H -0.276 1.276 20 H -0.253 1.253 21 C -0.127 4.127 22 C 0.113 3.887 23 H 0.101 0.899 24 H 0.149 0.851 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.394 0.606 34 H 0.273 0.727 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.693 16.091 7.155 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.180 4.180 3 C -0.160 4.160 4 C 0.339 3.661 5 O -0.472 6.472 6 N -0.333 5.333 7 C -0.002 4.002 8 C -0.169 4.169 9 C 0.048 3.952 10 N -0.403 5.403 11 C 0.344 3.656 12 O -0.516 6.516 13 C -0.613 4.613 14 H 0.105 0.895 15 C -0.186 4.186 16 N -0.452 5.452 17 Si 0.815 3.185 18 H -0.180 1.180 19 H -0.201 1.201 20 H -0.177 1.177 21 C -0.165 4.165 22 C -0.010 4.010 23 H 0.119 0.881 24 H 0.166 0.834 25 H 0.110 0.890 26 H 0.112 0.888 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.228 0.772 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.800 14.880 7.870 19.478 hybrid contribution 0.987 -0.483 -0.537 1.223 sum -8.814 14.397 7.332 18.404 Atomic orbital electron populations 1.24589 0.93076 1.04434 0.94239 1.21584 0.96476 0.93469 1.06424 1.20752 0.99351 0.91916 1.03966 1.19401 0.79002 0.85225 0.82494 1.90772 1.52596 1.70758 1.33101 1.48286 1.48966 1.26438 1.09565 1.21410 0.92650 0.86971 0.99162 1.22166 0.98046 1.01202 0.95494 1.20598 0.90166 0.98097 0.86307 1.45853 1.45350 1.09656 1.39446 1.18545 0.82254 0.82716 0.82095 1.90554 1.62372 1.28531 1.70186 1.21432 1.24329 0.95515 1.19994 0.89526 1.26941 0.98229 0.93917 0.99469 1.70181 1.37953 0.99790 1.37239 0.85105 0.77754 0.78313 0.77319 1.18047 1.20102 1.17681 1.22115 0.98333 0.95741 1.00315 1.21956 0.94632 1.02643 0.81726 0.88086 0.83366 0.89008 0.88800 0.93426 0.90277 0.91290 0.91736 0.93827 0.93577 0.77202 0.91679 0.88514 0.90010 0.90210 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 13.33 66.65 0.89 -0.68 16 2 C -0.18 -3.21 4.07 -18.70 -0.08 -3.28 16 3 C -0.10 -1.41 10.02 71.24 0.71 -0.70 16 4 C 0.55 15.14 7.05 86.57 0.61 15.75 16 5 O -0.59 -21.72 16.54 -4.10 -0.07 -21.79 16 6 N -0.60 -15.79 2.97 -823.16 -2.45 -18.24 16 7 C 0.12 3.85 6.41 86.36 0.55 4.41 16 8 C -0.13 -4.68 5.66 30.68 0.17 -4.50 16 9 C 0.15 5.57 2.41 45.03 0.11 5.68 16 10 N -0.75 -32.20 5.07 -446.65 -2.27 -34.47 16 11 C 0.54 30.70 7.71 86.36 0.67 31.37 16 12 O -0.63 -41.52 14.68 -4.30 -0.06 -41.59 16 13 C -0.58 -32.26 9.54 24.83 0.24 -32.02 16 14 H 0.09 4.32 7.85 -2.91 -0.02 4.30 16 15 C 0.03 1.64 5.50 85.31 0.47 2.11 16 16 N -0.82 -50.28 11.83 21.84 0.26 -50.03 16 17 Si 1.00 40.69 29.56 68.60 2.03 42.71 16 18 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 19 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 20 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 21 C -0.13 -2.98 5.55 30.67 0.17 -2.81 16 22 C 0.11 2.23 6.28 86.36 0.54 2.77 16 23 H 0.10 1.33 8.05 -2.91 -0.02 1.30 16 24 H 0.15 0.88 8.06 -2.91 -0.02 0.85 16 25 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.09 0.88 8.10 -2.39 -0.02 0.86 16 27 H 0.05 0.84 8.08 -2.39 -0.02 0.83 16 28 H 0.08 2.68 7.04 -2.39 -0.02 2.66 16 29 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.96 7.58 -2.39 -0.02 1.95 16 33 H 0.39 14.45 8.58 -92.71 -0.80 13.66 16 34 H 0.27 15.23 8.29 -92.71 -0.77 14.46 16 35 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 38 H 0.12 1.64 5.87 -2.39 -0.01 1.62 16 Total: -1.00 -81.55 320.00 2.76 -78.79 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.26 Total: 26.52 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: 5.06 Total: 18.09 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -4.46 Total: -102.74 kcal Atomic # 8 Polarization: -63.24 SS G_CDS: -0.13 Total: -63.37 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Total: -81.55 2.76 -78.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219571576.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.957 kcal (2) G-P(sol) polarization free energy of solvation -81.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds