Wall clock time and date at job start Mon Mar 30 2020 04:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86798 * 119.99904 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00251 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00001 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99712 * 3 2 1 7 7 C 1.39584 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00040 * 359.97438 * 7 2 1 9 9 N 1.36115 * 120.00248 * 179.97438 * 7 2 1 10 10 C 1.34777 * 120.00246 * 179.97438 * 9 7 2 11 11 O 1.21498 * 120.00013 * 0.02562 * 10 9 7 12 12 C 1.48836 * 119.99937 * 180.02562 * 10 9 7 13 13 O 1.21440 * 119.99966 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99937 * 180.02562 * 12 10 9 15 15 C 1.46496 * 119.99867 * 179.97438 * 14 12 10 16 16 C 1.53002 * 109.47030 * 180.02562 * 15 14 12 17 17 H 1.09000 * 110.36028 * 52.67673 * 16 15 14 18 18 C 1.54576 * 110.40458 * 290.22500 * 16 15 14 19 19 C 1.55950 * 104.63335 * 239.99654 * 18 16 15 20 20 H 1.08998 * 116.26891 * 161.04070 * 19 18 16 21 21 C 1.55921 * 105.22714 * 290.80320 * 19 18 16 22 22 C 1.54576 * 104.64343 * 70.00125 * 21 19 18 23 23 C 1.55923 * 110.40133 * 174.99987 * 16 15 14 24 24 H 1.08996 * 115.92619 * 318.75744 * 23 16 15 25 25 C 1.56953 * 100.64864 * 85.01480 * 23 16 15 26 26 H 0.97005 * 119.99794 * 0.02562 * 1 2 3 27 27 H 0.96999 * 119.99706 * 0.02562 * 9 7 2 28 28 H 0.96999 * 120.00047 * 0.02562 * 14 12 10 29 29 H 1.09000 * 109.47217 * 300.00355 * 15 14 12 30 30 H 1.09004 * 109.47074 * 60.00441 * 15 14 12 31 31 H 1.09003 * 110.40398 * 359.97438 * 18 16 15 32 32 H 1.09007 * 110.40581 * 122.41497 * 18 16 15 33 33 H 1.08999 * 110.40208 * 311.20977 * 21 19 18 34 34 H 1.09004 * 110.40253 * 188.79417 * 21 19 18 35 35 H 1.09008 * 110.40383 * 241.20834 * 22 21 19 36 36 H 1.08998 * 110.50477 * 118.84064 * 22 21 19 37 37 H 1.09001 * 112.02286 * 170.30098 * 25 23 16 38 38 H 1.08995 * 112.02941 * 296.82270 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 2.4917 2.0464 1.4000 5 1 3.5417 1.4400 -0.7001 6 1 1.4416 2.6526 -0.7001 7 6 2.0080 -1.2088 0.0005 8 1 1.4680 -2.1441 0.0014 9 7 3.3692 -1.2089 0.0000 10 6 4.0430 -2.3762 0.0011 11 8 3.4355 -3.4283 0.0020 12 6 5.5314 -2.3762 0.0011 13 8 6.1386 -1.3245 0.0006 14 7 6.2052 -3.5434 0.0016 15 6 7.6702 -3.5434 0.0010 16 6 8.1802 -4.9859 0.0011 17 1 7.7221 -5.5502 -0.8112 18 6 7.8881 -5.6607 1.3608 19 6 9.2913 -6.0603 1.9118 20 1 9.3510 -6.2575 2.9821 21 6 9.7861 -7.2074 0.9787 22 6 10.0792 -6.5140 -0.3713 23 6 9.7339 -5.0131 -0.1268 24 1 10.1665 -4.3037 -0.8323 25 6 10.1518 -4.8393 1.3760 26 1 -0.4850 0.8401 -0.0004 27 1 3.8542 -0.3689 -0.0004 28 1 5.7202 -4.3834 0.0016 29 1 8.0332 -3.0301 -0.8894 30 1 8.0339 -3.0290 0.8906 31 1 7.3816 -4.9646 2.0295 32 1 7.2864 -6.5584 1.2182 33 1 9.0080 -7.9611 0.8577 34 1 10.6940 -7.6582 1.3794 35 1 9.4453 -6.9268 -1.1561 36 1 11.1308 -6.6236 -0.6364 37 1 11.2193 -5.0015 1.5248 38 1 9.8282 -3.8809 1.7821 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223577014.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:25 Heat of formation + Delta-G solvation = -99.113787 kcal Electronic energy + Delta-G solvation = -20030.810093 eV Core-core repulsion = 16871.694084 eV Total energy + Delta-G solvation = -3159.116008 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.61474 -40.93099 -39.20645 -36.65936 -35.78363 -33.96569 -31.93620 -30.36468 -28.76625 -28.08998 -26.48909 -24.08191 -22.11539 -21.45258 -21.11504 -20.55813 -19.55717 -18.70766 -17.77787 -17.03717 -16.92488 -16.74106 -16.37145 -15.86585 -15.58673 -15.24895 -14.90761 -14.64835 -14.38050 -13.93854 -13.44635 -13.24026 -13.09833 -12.56986 -12.56140 -12.45939 -12.13601 -12.07379 -11.99739 -11.82446 -11.72389 -11.69166 -11.59608 -11.16918 -10.90645 -10.48893 -10.33046 -10.21808 -8.63607 -6.17761 0.50880 1.28354 1.32702 1.38612 1.73346 2.09559 2.27588 3.04263 3.06710 3.52518 3.55712 3.60286 3.82183 4.01566 4.11642 4.34350 4.41699 4.46898 4.51460 4.59879 4.67710 4.76535 4.83543 4.97977 5.03398 5.17349 5.20321 5.25367 5.26105 5.29570 5.31495 5.40777 5.43698 5.56669 5.72579 6.07608 6.36586 6.57609 6.90785 7.13490 7.60893 8.50951 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.045756 B = 0.003683 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.798357 B = 7600.701663 C = 7912.683146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.011 3.989 3 Si 0.949 3.051 4 H -0.252 1.252 5 H -0.248 1.248 6 H -0.256 1.256 7 C -0.340 4.340 8 H 0.078 0.922 9 N -0.532 5.532 10 C 0.405 3.595 11 O -0.604 6.604 12 C 0.521 3.479 13 O -0.562 6.562 14 N -0.690 5.690 15 C 0.125 3.875 16 C -0.096 4.096 17 H 0.083 0.917 18 C -0.123 4.123 19 C -0.103 4.103 20 H 0.102 0.898 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.092 4.092 24 H 0.107 0.893 25 C -0.127 4.127 26 H 0.291 0.709 27 H 0.393 0.607 28 H 0.415 0.585 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.687 -9.241 1.279 24.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.194 4.194 3 Si 0.768 3.232 4 H -0.176 1.176 5 H -0.172 1.172 6 H -0.180 1.180 7 C -0.470 4.470 8 H 0.096 0.904 9 N -0.170 5.170 10 C 0.190 3.810 11 O -0.491 6.491 12 C 0.303 3.697 13 O -0.442 6.442 14 N -0.342 5.342 15 C 0.003 3.997 16 C -0.115 4.115 17 H 0.102 0.898 18 C -0.160 4.160 19 C -0.121 4.121 20 H 0.120 0.880 21 C -0.156 4.156 22 C -0.155 4.155 23 C -0.110 4.110 24 H 0.125 0.875 25 C -0.164 4.164 26 H 0.101 0.899 27 H 0.229 0.771 28 H 0.252 0.748 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 22.521 -9.104 1.267 24.325 hybrid contribution -0.568 0.604 -0.018 0.830 sum 21.953 -8.499 1.249 23.574 Atomic orbital electron populations 1.69549 1.07891 1.30399 1.45063 1.26087 0.96381 1.02224 0.94692 0.85583 0.79358 0.77602 0.80638 1.17558 1.17249 1.17978 1.19179 0.80419 0.96081 1.51308 0.90428 1.41698 1.06632 1.07707 1.60941 1.19690 0.88438 0.84594 0.88295 1.90597 1.70163 1.31322 1.57053 1.19870 0.87873 0.84795 0.77139 1.90672 1.70446 1.31981 1.51082 1.45696 1.08203 1.08040 1.72287 1.21683 0.77150 0.98550 1.02345 1.22522 0.97207 0.92964 0.98769 0.89836 1.22749 0.97643 1.00042 0.95603 1.23885 0.94041 0.95388 0.98827 0.88020 1.22588 1.01091 0.96932 0.95010 1.22596 1.01739 0.93857 0.97330 1.23558 0.92365 0.97623 0.97500 0.87539 1.23929 0.99880 0.97754 0.94867 0.89883 0.77092 0.74802 0.91216 0.91400 0.92594 0.91471 0.91855 0.91017 0.91696 0.90732 0.90262 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.00 13.94 21.76 0.30 -50.69 16 2 C 0.01 0.61 5.51 85.14 0.47 1.08 16 3 Si 0.95 39.60 27.74 68.60 1.90 41.51 16 4 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 5 H -0.25 -9.86 6.53 99.48 0.65 -9.21 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 7 C -0.34 -19.89 10.16 84.35 0.86 -19.04 16 8 H 0.08 5.19 7.36 -2.91 -0.02 5.17 16 9 N -0.53 -27.48 5.06 -308.88 -1.56 -29.04 16 10 C 0.40 20.06 7.82 87.08 0.68 20.75 16 11 O -0.60 -32.97 16.03 -3.71 -0.06 -33.02 16 12 C 0.52 21.29 7.87 87.08 0.69 21.97 16 13 O -0.56 -24.18 16.47 -3.53 -0.06 -24.24 16 14 N -0.69 -21.77 5.43 -465.00 -2.52 -24.29 16 15 C 0.12 3.02 4.81 86.38 0.42 3.43 16 16 C -0.10 -1.73 2.33 -9.24 -0.02 -1.75 16 17 H 0.08 1.49 7.82 -2.39 -0.02 1.47 16 18 C -0.12 -2.22 5.70 32.15 0.18 -2.04 16 19 C -0.10 -1.50 5.21 -6.71 -0.03 -1.53 16 20 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 21 C -0.12 -1.49 6.24 32.14 0.20 -1.29 16 22 C -0.12 -1.45 6.22 32.15 0.20 -1.25 16 23 C -0.09 -1.31 4.54 -7.38 -0.03 -1.34 16 24 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 25 C -0.13 -1.81 6.46 34.03 0.22 -1.59 16 26 H 0.29 14.96 8.30 -92.70 -0.77 14.19 16 27 H 0.39 18.60 5.22 -92.71 -0.48 18.12 16 28 H 0.42 12.57 7.88 -92.71 -0.73 11.84 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 1.70 7.34 -2.38 -0.02 1.68 16 31 H 0.06 1.19 7.72 -2.39 -0.02 1.17 16 32 H 0.07 1.19 7.85 -2.38 -0.02 1.17 16 33 H 0.06 0.82 7.86 -2.39 -0.02 0.80 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.82 7.82 -2.38 -0.02 0.80 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 1.04 7.34 -2.39 -0.02 1.03 16 Total: -1.00 -67.56 309.64 1.64 -65.93 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: -0.19 Total: 36.44 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 3.82 Total: 17.41 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -3.78 Total: -104.02 kcal Atomic # 8 Polarization: -57.14 SS G_CDS: -0.12 Total: -57.26 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 1.90 Total: 41.51 kcal Total: -67.56 1.64 -65.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223577014.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.189 kcal (2) G-P(sol) polarization free energy of solvation -67.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds