Wall clock time and date at job start Mon Mar 30 2020 04:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00344 * 2 1 4 4 H 1.48498 * 109.47051 * 270.00499 * 3 2 1 5 5 H 1.48501 * 109.46877 * 30.00596 * 3 2 1 6 6 H 1.48502 * 109.47264 * 150.00133 * 3 2 1 7 7 C 1.37878 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00240 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00055 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47222 * 60.00208 * 9 7 2 11 11 O 1.42902 * 109.47167 * 299.99590 * 9 7 2 12 12 C 1.53004 * 109.47175 * 179.97438 * 9 7 2 13 13 C 1.50698 * 109.47066 * 185.00086 * 12 9 7 14 14 N 1.31127 * 126.55238 * 90.30477 * 13 12 9 15 15 C 1.34501 * 105.61411 * 180.11763 * 14 13 12 16 16 C 1.50698 * 126.28562 * 179.89836 * 15 14 13 17 17 C 1.52999 * 109.46824 * 119.72031 * 16 15 14 18 18 C 1.52997 * 109.46991 * 179.97438 * 17 16 15 19 19 C 1.52996 * 109.47131 * 299.99311 * 18 17 16 20 20 C 1.53002 * 109.46972 * 60.00459 * 19 18 17 21 21 C 1.52997 * 109.46817 * 299.99733 * 20 19 18 22 22 N 1.29943 * 107.42348 * 359.64105 * 15 14 13 23 23 O 1.21302 * 110.25156 * 0.22337 * 22 15 14 24 24 H 0.96997 * 119.99843 * 359.97438 * 1 2 3 25 25 H 0.96698 * 113.99998 * 300.00409 * 11 9 7 26 26 H 1.08999 * 109.47365 * 64.99793 * 12 9 7 27 27 H 1.08999 * 109.46863 * 305.00089 * 12 9 7 28 28 H 1.08993 * 109.47304 * 359.71224 * 16 15 14 29 29 H 1.09002 * 109.46719 * 299.99679 * 17 16 15 30 30 H 1.08993 * 109.47839 * 59.99520 * 17 16 15 31 31 H 1.09001 * 109.47289 * 179.97438 * 18 17 16 32 32 H 1.09000 * 109.47611 * 59.99933 * 18 17 16 33 33 H 1.08996 * 109.47452 * 300.00000 * 19 18 17 34 34 H 1.09000 * 109.47054 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.47070 * 179.97438 * 20 19 18 36 36 H 1.08996 * 109.47407 * 59.99513 * 20 19 18 37 37 H 1.09001 * 109.47502 * 300.00518 * 21 20 19 38 38 H 1.09001 * 109.47289 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6246 -2.5563 -0.8920 11 8 0.4289 -2.5757 1.1648 12 6 2.2451 -3.6622 -0.0027 13 6 1.4956 -4.9636 -0.1278 14 7 1.1819 -5.5802 -1.2417 15 6 0.5208 -6.6901 -0.8672 16 6 -0.0543 -7.7379 -1.7850 17 6 0.5972 -9.0898 -1.4871 18 6 0.0129 -10.1538 -2.4184 19 6 -1.4971 -10.2548 -2.1934 20 6 -2.1487 -8.9029 -2.4912 21 6 -1.5644 -7.8390 -1.5599 22 7 0.4740 -6.6956 0.4313 23 8 1.0284 -5.7125 0.8757 24 1 -0.4850 0.8400 0.0004 25 1 0.9208 -2.5309 1.9961 26 1 2.8114 -3.6570 0.9286 27 1 2.9292 -3.5545 -0.8445 28 1 0.1412 -7.4606 -2.8208 29 1 1.6730 -9.0177 -1.6470 30 1 0.4017 -9.3671 -0.4513 31 1 0.4773 -11.1168 -2.2065 32 1 0.2081 -9.8768 -3.4544 33 1 -1.6923 -10.5319 -1.1574 34 1 -1.9133 -11.0132 -2.8565 35 1 -3.2245 -8.9751 -2.3313 36 1 -1.9535 -8.6258 -3.5271 37 1 -1.7595 -8.1161 -0.5239 38 1 -2.0289 -6.8759 -1.7718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236509616.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:55 Heat of formation + Delta-G solvation = -39.835373 kcal Electronic energy + Delta-G solvation = -20173.181794 eV Core-core repulsion = 17016.636290 eV Total energy + Delta-G solvation = -3156.545504 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.52325 -39.69484 -38.20597 -36.66642 -34.45625 -34.22633 -31.88537 -31.77157 -30.80645 -27.71531 -25.47737 -24.54955 -23.58578 -23.11090 -21.82871 -20.51174 -19.28287 -18.95991 -18.30662 -16.73258 -16.67281 -16.42673 -15.77649 -15.48927 -15.40013 -15.20675 -14.97539 -14.67247 -13.87678 -13.78682 -13.46929 -13.29973 -13.21211 -12.91442 -12.72687 -12.57991 -12.53762 -12.32256 -12.11680 -12.05568 -11.93924 -11.50061 -11.46405 -11.28299 -11.11065 -10.78615 -10.70567 -10.19968 -8.14303 -6.41070 0.17517 1.23888 1.46405 1.46847 1.57671 1.90914 2.41735 2.62972 3.08002 3.13856 3.67035 3.72306 3.81339 4.07222 4.23008 4.24266 4.28828 4.34979 4.37261 4.45778 4.47958 4.51659 4.61570 4.74762 4.88974 4.98117 5.01941 5.05501 5.11800 5.17456 5.20440 5.30402 5.32794 5.51025 5.55565 5.68686 5.98506 6.70738 7.18588 7.32972 7.51344 8.91093 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.042095 B = 0.003756 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.006216 B = 7452.846544 C = 7630.964203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.024 3.976 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.256 1.256 7 C -0.581 4.581 8 H 0.078 0.922 9 C 0.238 3.762 10 H 0.018 0.982 11 O -0.583 6.583 12 C -0.047 4.047 13 C 0.212 3.788 14 N -0.518 5.518 15 C 0.170 3.830 16 C 0.006 3.994 17 C -0.104 4.104 18 C -0.112 4.112 19 C -0.119 4.119 20 C -0.112 4.112 21 C -0.110 4.110 22 N -0.406 5.406 23 O 0.063 5.937 24 H 0.261 0.739 25 H 0.364 0.636 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.407 -17.829 -3.677 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.179 4.179 3 Si 0.790 3.210 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.180 1.180 7 C -0.619 4.619 8 H 0.097 0.903 9 C 0.179 3.821 10 H 0.036 0.964 11 O -0.388 6.388 12 C -0.086 4.086 13 C -0.007 4.007 14 N -0.253 5.253 15 C -0.103 4.103 16 C -0.014 4.014 17 C -0.143 4.143 18 C -0.149 4.149 19 C -0.156 4.156 20 C -0.149 4.149 21 C -0.148 4.148 22 N -0.118 5.118 23 O 0.010 5.990 24 H 0.070 0.930 25 H 0.210 0.790 26 H 0.140 0.860 27 H 0.138 0.862 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.396 -18.464 -4.087 18.915 hybrid contribution 0.619 1.543 0.553 1.752 sum 1.015 -16.921 -3.534 17.316 Atomic orbital electron populations 1.70238 1.07997 1.27541 1.48224 1.25960 0.95416 1.03264 0.93228 0.85459 0.78881 0.78331 0.78306 1.20123 1.21458 1.17980 1.21959 0.94181 0.91335 1.54410 0.90343 1.19193 0.87576 0.90134 0.85192 0.96362 1.86550 1.39539 1.96327 1.16395 1.21310 0.97516 0.82860 1.06904 1.29325 0.93889 0.96554 0.80973 1.71926 1.18301 1.07245 1.27794 1.26441 0.97915 0.95895 0.90088 1.19790 0.95502 0.90003 0.96112 1.21545 0.99492 0.92480 1.00776 1.21519 0.95849 0.98139 0.99383 1.21573 0.95024 0.96858 1.02185 1.21516 1.00223 0.94071 0.99112 1.21566 0.92411 0.99899 1.00953 1.74461 1.17755 1.05989 1.13626 1.85240 1.52216 1.24903 1.36688 0.92995 0.78971 0.86031 0.86153 0.87953 0.92050 0.92211 0.90046 0.90796 0.92176 0.89781 0.90598 0.90846 0.92314 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.20 12.84 21.45 0.28 -52.93 16 2 C 0.02 1.28 5.40 84.66 0.46 1.74 16 3 Si 0.97 41.52 29.54 68.60 2.03 43.55 16 4 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 7 C -0.58 -29.71 8.76 25.60 0.22 -29.49 16 8 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 9 C 0.24 11.63 2.81 29.85 0.08 11.71 16 10 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 11 O -0.58 -29.44 12.48 -148.98 -1.86 -31.30 16 12 C -0.05 -1.75 5.46 29.85 0.16 -1.58 16 13 C 0.21 8.31 7.54 88.38 0.67 8.97 16 14 N -0.52 -20.63 11.55 -303.20 -3.50 -24.13 16 15 C 0.17 6.07 6.72 138.46 0.93 7.00 16 16 C 0.01 0.16 2.66 -11.54 -0.03 0.13 16 17 C -0.10 -2.26 5.19 30.59 0.16 -2.10 16 18 C -0.11 -1.68 5.92 30.59 0.18 -1.50 16 19 C -0.12 -1.71 5.92 30.59 0.18 -1.53 16 20 C -0.11 -1.93 5.92 30.59 0.18 -1.75 16 21 C -0.11 -2.72 5.18 30.60 0.16 -2.56 16 22 N -0.41 -15.40 12.16 -60.32 -0.73 -16.14 16 23 O 0.06 2.46 11.31 74.84 0.85 3.31 16 24 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 25 H 0.36 15.54 9.04 -74.06 -0.67 14.87 16 26 H 0.12 3.80 8.14 -2.39 -0.02 3.78 16 27 H 0.12 4.17 8.14 -2.39 -0.02 4.15 16 28 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -66.02 317.77 0.79 -65.22 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.39 Total: 23.37 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 3.36 Total: -10.96 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -3.96 Total: -93.19 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -1.01 Total: -27.99 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -66.02 0.79 -65.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236509616.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.390 kcal (2) G-P(sol) polarization free energy of solvation -66.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds