Wall clock time and date at job start Mon Mar 30 2020 04:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00439 * 2 1 4 4 H 1.48503 * 109.47483 * 240.00123 * 3 2 1 5 5 H 1.48508 * 109.46837 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47055 * 119.99672 * 3 2 1 7 7 C 1.37886 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99720 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00162 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46908 * 300.00256 * 9 7 2 11 11 O 1.42905 * 109.47061 * 59.99830 * 9 7 2 12 12 C 1.52996 * 109.47364 * 179.97438 * 9 7 2 13 13 C 1.50691 * 109.47367 * 175.00075 * 12 9 7 14 14 N 1.31138 * 126.55417 * 90.00159 * 13 12 9 15 15 C 1.34495 * 105.61509 * 179.97438 * 14 13 12 16 16 C 1.50700 * 126.28274 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.47342 * 240.00023 * 16 15 14 18 18 C 1.52999 * 109.47432 * 180.02562 * 17 16 15 19 19 C 1.53003 * 109.46849 * 60.00068 * 18 17 16 20 20 C 1.53004 * 109.47266 * 300.00171 * 19 18 17 21 21 C 1.52999 * 109.47004 * 59.99920 * 20 19 18 22 22 N 1.29942 * 107.42747 * 359.97438 * 15 14 13 23 23 O 1.21306 * 110.25137 * 0.02562 * 22 15 14 24 24 H 0.96996 * 119.99346 * 0.02562 * 1 2 3 25 25 H 0.96705 * 113.99881 * 59.99882 * 11 9 7 26 26 H 1.09001 * 109.47188 * 54.99722 * 12 9 7 27 27 H 1.09000 * 109.47308 * 295.00364 * 12 9 7 28 28 H 1.09004 * 109.47376 * 0.02562 * 16 15 14 29 29 H 1.09004 * 109.47234 * 300.00514 * 17 16 15 30 30 H 1.08999 * 109.47104 * 60.00024 * 17 16 15 31 31 H 1.08995 * 109.46855 * 300.00336 * 18 17 16 32 32 H 1.08998 * 109.47392 * 179.97438 * 18 17 16 33 33 H 1.08998 * 109.47031 * 179.97438 * 19 18 17 34 34 H 1.09004 * 109.47024 * 60.00199 * 19 18 17 35 35 H 1.09004 * 109.46667 * 300.00247 * 20 19 18 36 36 H 1.08999 * 109.47322 * 180.02562 * 20 19 18 37 37 H 1.09006 * 109.46921 * 180.02562 * 21 20 19 38 38 H 1.09004 * 109.47141 * 60.00060 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 0.4289 -2.5746 -1.1670 12 6 2.2451 -3.6622 -0.0018 13 6 1.4958 -4.9637 0.1220 14 7 1.0369 -5.6975 -0.8632 15 6 0.4450 -6.7557 -0.2813 16 6 -0.2400 -7.8958 -0.9899 17 6 -1.7055 -7.9596 -0.5554 18 6 -2.4008 -9.1174 -1.2743 19 6 -1.7048 -10.4319 -0.9156 20 6 -0.2392 -10.3682 -1.3501 21 6 0.4560 -9.2103 -0.6312 22 7 0.5722 -6.6145 1.0042 23 8 1.1728 -5.5913 1.2568 24 1 -0.4849 0.8401 -0.0004 25 1 0.9208 -2.5290 -1.9984 26 1 2.9299 -3.5557 0.8395 27 1 2.8107 -3.6557 -0.9336 28 1 -0.1866 -7.7386 -2.0672 29 1 -1.7586 -8.1170 0.5219 30 1 -2.2012 -7.0229 -0.8105 31 1 -2.3477 -8.9604 -2.3516 32 1 -3.4448 -9.1631 -0.9644 33 1 -2.2004 -11.2568 -1.4274 34 1 -1.7579 -10.5889 0.1618 35 1 -0.1862 -10.2111 -2.4275 36 1 0.2565 -11.3048 -1.0950 37 1 1.5001 -9.1646 -0.9411 38 1 0.4029 -9.3673 0.4462 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236552461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:58 Heat of formation + Delta-G solvation = -17.791150 kcal Electronic energy + Delta-G solvation = -20193.402838 eV Core-core repulsion = 17037.813244 eV Total energy + Delta-G solvation = -3155.589594 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.02759 -38.74662 -36.32419 -35.17172 -32.92930 -32.18970 -30.91429 -30.71107 -29.16657 -25.79743 -24.26292 -22.95195 -22.72927 -21.55948 -20.52762 -19.44017 -17.56720 -17.30886 -16.68047 -15.70006 -14.71439 -14.57212 -14.46709 -14.33955 -14.31668 -14.09888 -13.42716 -12.92302 -12.87306 -12.55211 -12.35442 -12.16264 -11.39642 -11.33364 -11.27681 -11.13823 -11.02341 -10.91692 -10.83322 -10.69800 -10.50663 -10.36520 -10.29797 -10.14532 -9.61600 -9.07374 -8.66499 -8.26832 -6.09523 -4.30125 1.69334 2.74474 3.25690 3.31366 3.32093 3.42361 3.92877 4.32613 4.41957 4.61822 4.67039 4.78048 5.09889 5.10989 5.18152 5.30586 5.33301 5.36420 5.42757 5.52209 5.72877 5.84995 5.86236 5.94513 6.00258 6.01500 6.03523 6.06166 6.17499 6.20059 6.33116 6.34171 6.51772 6.60896 7.51922 7.72549 7.99902 8.69045 8.71866 9.29314 9.47569 10.94770 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.045761 B = 0.003776 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.724543 B = 7413.879526 C = 7681.695696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.081 3.919 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.577 4.577 8 H 0.061 0.939 9 C 0.237 3.763 10 H 0.061 0.939 11 O -0.559 6.559 12 C -0.062 4.062 13 C 0.215 3.785 14 N -0.487 5.487 15 C 0.170 3.830 16 C 0.010 3.990 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.121 4.121 20 C -0.116 4.116 21 C -0.110 4.110 22 N -0.397 5.397 23 O 0.063 5.937 24 H 0.263 0.737 25 H 0.349 0.651 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.107 -17.057 -2.175 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.126 4.126 3 Si 0.722 3.278 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.615 4.615 8 H 0.079 0.921 9 C 0.178 3.822 10 H 0.079 0.921 11 O -0.361 6.361 12 C -0.102 4.102 13 C -0.005 4.005 14 N -0.220 5.220 15 C -0.104 4.104 16 C -0.011 4.011 17 C -0.151 4.151 18 C -0.154 4.154 19 C -0.159 4.159 20 C -0.154 4.154 21 C -0.149 4.149 22 N -0.108 5.108 23 O 0.008 5.992 24 H 0.073 0.927 25 H 0.193 0.807 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.144 -17.667 -1.552 17.772 hybrid contribution 1.030 1.257 -0.274 1.648 sum -0.114 -16.410 -1.826 16.512 Atomic orbital electron populations 1.70072 1.06044 1.26877 1.46104 1.25040 0.94728 0.99308 0.93557 0.86641 0.79634 0.82757 0.78791 1.20007 1.21182 1.20014 1.21491 0.93258 0.90771 1.55962 0.92051 1.19397 0.87587 0.88176 0.87014 0.92122 1.86601 1.38108 1.96120 1.15295 1.21537 0.98791 0.85219 1.04613 1.29285 0.94689 0.97193 0.79302 1.71911 1.15547 1.04167 1.30349 1.25692 0.99981 0.97211 0.87483 1.19492 0.93760 0.88376 0.99424 1.21581 0.93340 0.99138 1.01014 1.21519 0.99108 0.94202 1.00588 1.21570 0.95513 0.97386 1.01402 1.21518 0.95612 0.97876 1.00395 1.21574 0.99093 0.92944 1.01264 1.74475 1.15526 1.02801 1.18037 1.85256 1.52872 1.25590 1.35524 0.92707 0.80652 0.88382 0.88155 0.88416 0.91275 0.91373 0.91647 0.91623 0.91965 0.91903 0.91676 0.91733 0.91781 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.69 12.84 55.43 0.71 -23.98 16 2 C 0.08 2.17 5.40 -17.82 -0.10 2.08 16 3 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.58 -14.87 8.76 -34.44 -0.30 -15.18 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.24 5.72 2.81 -27.89 -0.08 5.64 16 10 H 0.06 1.63 8.14 -51.93 -0.42 1.21 16 11 O -0.56 -14.12 12.48 -35.23 -0.44 -14.55 16 12 C -0.06 -1.18 5.46 -27.89 -0.15 -1.33 16 13 C 0.21 4.19 7.54 -13.05 -0.10 4.09 16 14 N -0.49 -9.51 11.55 -9.87 -0.11 -9.63 16 15 C 0.17 3.00 6.72 -156.38 -1.05 1.95 16 16 C 0.01 0.13 2.66 -91.77 -0.24 -0.11 16 17 C -0.11 -1.41 5.19 -26.73 -0.14 -1.55 16 18 C -0.12 -1.12 5.92 -26.73 -0.16 -1.27 16 19 C -0.12 -1.04 5.92 -26.73 -0.16 -1.19 16 20 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 21 C -0.11 -1.26 5.18 -26.73 -0.14 -1.40 16 22 N -0.40 -7.44 12.16 30.90 0.38 -7.07 16 23 O 0.06 1.23 11.31 18.09 0.20 1.43 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.35 7.83 9.04 45.56 0.41 8.24 16 26 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 27 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 28 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 317.77 15.07 4.79 4.79 Total: -1.00 -30.13 317.77 -7.32 -37.45 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.05 Total: 5.69 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -2.77 Total: -9.47 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.97 Total: -40.68 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.24 Total: -13.12 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.13 -7.32 -37.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236552461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.656 kcal (2) G-P(sol) polarization free energy of solvation -30.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds