Wall clock time and date at job start Mon Mar 30 2020 04:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00439 * 2 1 4 4 H 1.48503 * 109.47483 * 240.00123 * 3 2 1 5 5 H 1.48508 * 109.46837 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47055 * 119.99672 * 3 2 1 7 7 C 1.37886 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99720 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00162 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46908 * 300.00256 * 9 7 2 11 11 O 1.42905 * 109.47061 * 59.99830 * 9 7 2 12 12 C 1.52996 * 109.47364 * 179.97438 * 9 7 2 13 13 C 1.50691 * 109.47367 * 175.00075 * 12 9 7 14 14 N 1.31138 * 126.55417 * 90.00159 * 13 12 9 15 15 C 1.34495 * 105.61509 * 179.97438 * 14 13 12 16 16 C 1.50700 * 126.28274 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.47342 * 240.00023 * 16 15 14 18 18 C 1.52999 * 109.47432 * 180.02562 * 17 16 15 19 19 C 1.53003 * 109.46849 * 60.00068 * 18 17 16 20 20 C 1.53004 * 109.47266 * 300.00171 * 19 18 17 21 21 C 1.52999 * 109.47004 * 59.99920 * 20 19 18 22 22 N 1.29942 * 107.42747 * 359.97438 * 15 14 13 23 23 O 1.21306 * 110.25137 * 0.02562 * 22 15 14 24 24 H 0.96996 * 119.99346 * 0.02562 * 1 2 3 25 25 H 0.96705 * 113.99881 * 59.99882 * 11 9 7 26 26 H 1.09001 * 109.47188 * 54.99722 * 12 9 7 27 27 H 1.09000 * 109.47308 * 295.00364 * 12 9 7 28 28 H 1.09004 * 109.47376 * 0.02562 * 16 15 14 29 29 H 1.09004 * 109.47234 * 300.00514 * 17 16 15 30 30 H 1.08999 * 109.47104 * 60.00024 * 17 16 15 31 31 H 1.08995 * 109.46855 * 300.00336 * 18 17 16 32 32 H 1.08998 * 109.47392 * 179.97438 * 18 17 16 33 33 H 1.08998 * 109.47031 * 179.97438 * 19 18 17 34 34 H 1.09004 * 109.47024 * 60.00199 * 19 18 17 35 35 H 1.09004 * 109.46667 * 300.00247 * 20 19 18 36 36 H 1.08999 * 109.47322 * 180.02562 * 20 19 18 37 37 H 1.09006 * 109.46921 * 180.02562 * 21 20 19 38 38 H 1.09004 * 109.47141 * 60.00060 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 0.4289 -2.5746 -1.1670 12 6 2.2451 -3.6622 -0.0018 13 6 1.4958 -4.9637 0.1220 14 7 1.0369 -5.6975 -0.8632 15 6 0.4450 -6.7557 -0.2813 16 6 -0.2400 -7.8958 -0.9899 17 6 -1.7055 -7.9596 -0.5554 18 6 -2.4008 -9.1174 -1.2743 19 6 -1.7048 -10.4319 -0.9156 20 6 -0.2392 -10.3682 -1.3501 21 6 0.4560 -9.2103 -0.6312 22 7 0.5722 -6.6145 1.0042 23 8 1.1728 -5.5913 1.2568 24 1 -0.4849 0.8401 -0.0004 25 1 0.9208 -2.5290 -1.9984 26 1 2.9299 -3.5557 0.8395 27 1 2.8107 -3.6557 -0.9336 28 1 -0.1866 -7.7386 -2.0672 29 1 -1.7586 -8.1170 0.5219 30 1 -2.2012 -7.0229 -0.8105 31 1 -2.3477 -8.9604 -2.3516 32 1 -3.4448 -9.1631 -0.9644 33 1 -2.2004 -11.2568 -1.4274 34 1 -1.7579 -10.5889 0.1618 35 1 -0.1862 -10.2111 -2.4275 36 1 0.2565 -11.3048 -1.0950 37 1 1.5001 -9.1646 -0.9411 38 1 0.4029 -9.3673 0.4462 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236552461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:58 Heat of formation + Delta-G solvation = -38.894765 kcal Electronic energy + Delta-G solvation = -20194.317960 eV Core-core repulsion = 17037.813244 eV Total energy + Delta-G solvation = -3156.504716 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.51536 -39.68640 -38.19000 -36.60799 -34.44483 -34.19875 -31.91672 -31.76421 -30.76379 -27.69981 -25.46423 -24.51449 -23.57888 -23.16635 -21.76139 -20.49335 -19.27571 -18.95393 -18.26938 -16.72251 -16.65466 -16.36541 -16.06271 -15.46980 -15.20799 -15.18271 -14.93104 -14.63342 -13.86881 -13.81837 -13.47279 -13.27924 -13.20452 -12.86828 -12.74938 -12.56408 -12.48437 -12.30180 -12.11101 -12.04148 -11.93192 -11.48081 -11.45848 -11.27504 -11.08856 -10.78041 -10.69325 -10.16879 -8.13451 -6.40163 0.17591 1.27985 1.47001 1.48332 1.56199 1.90168 2.42333 2.65313 3.09775 3.14490 3.68794 3.73225 3.82393 4.07968 4.17460 4.24981 4.32939 4.37656 4.41679 4.48634 4.48867 4.52205 4.61113 4.74618 4.91162 4.97246 5.02696 5.08449 5.12590 5.18085 5.21014 5.31070 5.33443 5.51524 5.55595 5.69253 5.99541 6.71102 7.19152 7.33531 7.51670 8.91586 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.045761 B = 0.003776 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.724543 B = 7413.879526 C = 7681.695696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.024 3.976 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.582 4.582 8 H 0.078 0.922 9 C 0.236 3.764 10 H 0.021 0.979 11 O -0.578 6.578 12 C -0.046 4.046 13 C 0.208 3.792 14 N -0.501 5.501 15 C 0.171 3.829 16 C 0.007 3.993 17 C -0.109 4.109 18 C -0.112 4.112 19 C -0.119 4.119 20 C -0.111 4.111 21 C -0.105 4.105 22 N -0.408 5.408 23 O 0.051 5.949 24 H 0.261 0.739 25 H 0.360 0.640 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 -18.220 -2.996 18.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.620 4.620 8 H 0.096 0.904 9 C 0.178 3.822 10 H 0.039 0.961 11 O -0.383 6.383 12 C -0.086 4.086 13 C -0.011 4.011 14 N -0.235 5.235 15 C -0.102 4.102 16 C -0.013 4.013 17 C -0.148 4.148 18 C -0.149 4.149 19 C -0.156 4.156 20 C -0.149 4.149 21 C -0.143 4.143 22 N -0.121 5.121 23 O -0.001 6.001 24 H 0.070 0.930 25 H 0.206 0.794 26 H 0.139 0.861 27 H 0.138 0.862 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.077 -18.834 -2.364 18.982 hybrid contribution 0.673 1.570 -0.020 1.709 sum 0.596 -17.264 -2.384 17.438 Atomic orbital electron populations 1.70234 1.07969 1.27569 1.48191 1.25953 0.95408 1.03219 0.93247 0.85524 0.78173 0.77986 0.79357 1.18859 1.21726 1.18995 1.21943 0.94168 0.91385 1.54491 0.90382 1.19206 0.87619 0.90063 0.85360 0.96068 1.86547 1.39243 1.96325 1.16156 1.21297 0.97585 0.83004 1.06669 1.29357 0.94816 0.97476 0.79478 1.71924 1.15989 1.04848 1.30741 1.26468 0.98962 0.97483 0.87307 1.19779 0.94211 0.88105 0.99229 1.21561 0.92818 0.99698 1.00736 1.21515 0.99373 0.93400 1.00628 1.21576 0.95290 0.97262 1.01519 1.21520 0.95618 0.97206 1.00540 1.21549 0.99072 0.92685 1.01000 1.74467 1.16104 1.02861 1.18698 1.85237 1.53230 1.25970 1.35690 0.93020 0.79413 0.86144 0.86205 0.87895 0.92393 0.93394 0.90817 0.90645 0.89794 0.92223 0.90759 0.90077 0.92024 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.10 12.84 21.45 0.28 -52.82 16 2 C 0.02 1.30 5.40 84.66 0.46 1.76 16 3 Si 0.97 41.47 29.54 68.60 2.03 43.50 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.58 -29.69 8.76 25.60 0.22 -29.46 16 8 H 0.08 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.24 11.51 2.81 29.85 0.08 11.59 16 10 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 11 O -0.58 -29.67 12.48 -148.98 -1.86 -31.53 16 12 C -0.05 -1.73 5.46 29.84 0.16 -1.56 16 13 C 0.21 8.12 7.54 88.38 0.67 8.78 16 14 N -0.50 -19.56 11.55 -303.18 -3.50 -23.06 16 15 C 0.17 6.07 6.72 138.46 0.93 7.00 16 16 C 0.01 0.18 2.66 -11.54 -0.03 0.15 16 17 C -0.11 -2.71 5.19 30.59 0.16 -2.55 16 18 C -0.11 -1.93 5.92 30.59 0.18 -1.75 16 19 C -0.12 -1.71 5.92 30.60 0.18 -1.53 16 20 C -0.11 -1.68 5.92 30.60 0.18 -1.49 16 21 C -0.10 -2.25 5.18 30.59 0.16 -2.09 16 22 N -0.41 -15.46 12.16 -60.30 -0.73 -16.19 16 23 O 0.05 2.02 11.31 74.81 0.85 2.87 16 24 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 25 H 0.36 16.22 9.04 -74.05 -0.67 15.55 16 26 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 27 H 0.12 3.99 8.14 -2.39 -0.02 3.98 16 28 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -65.12 317.77 0.79 -64.33 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.39 Total: 24.07 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 3.36 Total: -11.16 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -3.96 Total: -92.07 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -1.01 Total: -28.67 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -65.12 0.79 -64.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236552461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.434 kcal (2) G-P(sol) polarization free energy of solvation -65.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds