Wall clock time and date at job start Mon Mar 30 2020 04:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00317 * 2 1 4 4 H 1.48491 * 109.47592 * 270.00458 * 3 2 1 5 5 H 1.48502 * 109.46948 * 30.00835 * 3 2 1 6 6 H 1.48503 * 109.46945 * 150.00301 * 3 2 1 7 7 C 1.37884 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99665 * 182.62033 * 7 2 1 9 9 C 1.50700 * 119.99661 * 2.61558 * 7 2 1 10 10 C 1.53002 * 109.50350 * 298.14695 * 9 7 2 11 11 N 1.46898 * 109.47096 * 298.58442 * 10 9 7 12 12 C 1.53127 * 109.49984 * 178.07278 * 9 7 2 13 13 C 1.53120 * 109.15757 * 297.71054 * 12 9 7 14 14 C 1.53032 * 109.28204 * 302.34521 * 13 12 9 15 15 N 1.46856 * 109.52022 * 59.18011 * 14 13 12 16 16 C 1.46902 * 110.99963 * 174.16156 * 15 14 13 17 17 C 1.52998 * 109.46858 * 76.16393 * 16 15 14 18 18 F 1.39895 * 109.46956 * 66.15201 * 17 16 15 19 19 F 1.39892 * 109.47386 * 306.14526 * 17 16 15 20 20 F 1.39901 * 109.46951 * 186.14598 * 17 16 15 21 21 C 1.46847 * 111.19953 * 298.25728 * 15 14 13 22 22 H 0.96997 * 119.99229 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47044 * 58.58714 * 10 9 7 24 24 H 1.08996 * 109.46964 * 178.58607 * 10 9 7 25 25 H 1.00902 * 110.99869 * 179.97438 * 11 10 9 26 26 H 1.00895 * 111.00296 * 303.95500 * 11 10 9 27 27 H 1.08996 * 109.51956 * 177.81118 * 12 9 7 28 28 H 1.08999 * 109.52180 * 57.61396 * 12 9 7 29 29 H 1.09005 * 109.50047 * 182.40258 * 13 12 9 30 30 H 1.08999 * 109.53516 * 62.30895 * 13 12 9 31 31 H 1.08999 * 109.46534 * 299.16730 * 14 13 12 32 32 H 1.09002 * 109.46492 * 179.19148 * 14 13 12 33 33 H 1.09002 * 109.46624 * 316.16846 * 16 15 14 34 34 H 1.08991 * 109.46965 * 196.16955 * 16 15 14 35 35 H 1.08996 * 109.46083 * 181.75733 * 21 15 14 36 36 H 1.08999 * 109.46288 * 301.73164 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5469 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0837 -1.1946 0.0422 9 6 1.2521 -2.4985 -0.0607 10 6 0.3579 -2.6297 1.1739 11 7 1.1911 -2.6334 2.3838 12 6 2.2474 -3.6615 -0.0970 13 6 3.0984 -3.5553 -1.3655 14 6 2.1817 -3.5588 -2.5908 15 7 1.2491 -2.4272 -2.5092 16 6 0.4461 -2.3174 -3.7344 17 6 -0.6408 -3.3942 -3.7299 18 9 -1.5475 -3.1373 -2.6961 19 9 -0.0535 -4.6488 -3.5342 20 9 -1.3151 -3.3811 -4.9556 21 6 0.3888 -2.5326 -1.3238 22 1 -0.4849 0.8401 0.0004 23 1 -0.3345 -1.7888 1.2120 24 1 -0.2048 -3.5615 1.1175 25 1 0.6233 -2.7187 3.2135 26 1 1.8847 -3.3649 2.3430 27 1 1.7037 -4.6062 -0.1013 28 1 2.8933 -3.6158 0.7799 29 1 3.7801 -4.4042 -1.4185 30 1 3.6722 -2.6288 -1.3429 31 1 1.6188 -4.4917 -2.6207 32 1 2.7836 -3.4687 -3.4951 33 1 1.0893 -2.4539 -4.6037 34 1 -0.0184 -1.3324 -3.7772 35 1 -0.3113 -1.6973 -1.3079 36 1 -0.1655 -3.4704 -1.3596 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260094398.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:29 Heat of formation + Delta-G solvation = -156.813308 kcal Electronic energy + Delta-G solvation = -22776.370639 eV Core-core repulsion = 19072.895852 eV Total energy + Delta-G solvation = -3703.474788 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.15061 -48.61796 -48.59372 -40.15293 -36.63290 -33.95756 -33.58582 -30.93622 -29.43448 -26.80827 -25.53851 -24.90574 -23.27525 -21.91129 -20.51997 -19.53882 -19.40659 -18.33618 -17.30254 -16.80195 -16.63825 -15.92389 -15.76065 -15.62342 -15.30003 -15.13417 -15.02944 -14.89654 -14.71457 -14.57093 -14.32523 -13.92177 -13.43199 -13.27997 -13.14825 -12.92332 -12.70935 -12.40764 -12.37054 -12.10508 -11.79724 -11.59639 -10.99749 -10.67456 -10.50698 -10.16463 -9.08534 -9.01444 -7.74518 -5.77249 1.51391 1.54482 1.60136 1.87918 2.65788 2.81128 2.96585 3.13509 3.46213 3.54540 4.11728 4.20040 4.25693 4.36529 4.45397 4.58502 4.71417 4.83688 4.89665 4.90326 4.99723 5.10239 5.30309 5.36200 5.42205 5.61605 5.86331 5.89652 6.23977 6.30183 6.38786 6.64471 6.82461 7.00620 7.16418 7.83352 9.26914 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.020090 B = 0.008800 C = 0.007880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.388249 B = 3181.048519 C = 3552.358823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.030 3.970 3 Si 0.930 3.070 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.282 1.282 7 C -0.433 4.433 8 H 0.038 0.962 9 C 0.067 3.933 10 C 0.082 3.918 11 N -0.834 5.834 12 C -0.107 4.107 13 C -0.102 4.102 14 C 0.039 3.961 15 N -0.508 5.508 16 C 0.022 3.978 17 C 0.412 3.588 18 F -0.193 7.193 19 F -0.188 7.188 20 F -0.191 7.191 21 C 0.070 3.930 22 H 0.248 0.752 23 H 0.071 0.929 24 H -0.023 1.023 25 H 0.330 0.670 26 H 0.331 0.669 27 H 0.034 0.966 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.141 0.859 34 H 0.113 0.887 35 H 0.085 0.915 36 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.268 -7.964 -6.714 10.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.166 4.166 3 Si 0.760 3.240 4 H -0.212 1.212 5 H -0.227 1.227 6 H -0.208 1.208 7 C -0.471 4.471 8 H 0.056 0.944 9 C 0.066 3.934 10 C -0.050 4.050 11 N -0.363 5.363 12 C -0.144 4.144 13 C -0.139 4.139 14 C -0.088 4.088 15 N -0.229 5.229 16 C -0.109 4.109 17 C 0.356 3.644 18 F -0.175 7.175 19 F -0.170 7.170 20 F -0.172 7.172 21 C -0.058 4.058 22 H 0.058 0.942 23 H 0.089 0.911 24 H -0.005 1.005 25 H 0.141 0.859 26 H 0.144 0.856 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.158 0.842 34 H 0.131 0.869 35 H 0.103 0.897 36 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 1.643 -6.686 -6.870 9.726 hybrid contribution -1.002 -0.724 0.308 1.274 sum 0.641 -7.410 -6.562 9.919 Atomic orbital electron populations 1.69817 1.06260 1.25340 1.54426 1.25133 0.95091 1.00173 0.96205 0.86018 0.78681 0.82205 0.77092 1.21188 1.22739 1.20754 1.20687 0.91395 0.90079 1.44948 0.94415 1.18269 0.91930 0.93569 0.89642 1.21698 0.95428 0.96323 0.91535 1.58510 1.19121 1.55031 1.03676 1.21602 0.98139 0.96764 0.97943 1.21425 0.97337 1.01578 0.93609 1.22534 0.94923 0.91655 0.99693 1.61943 1.17514 1.42868 1.00570 1.23880 0.92594 0.96515 0.97960 1.22794 0.84565 0.84216 0.72838 1.93179 1.70772 1.93955 1.59559 1.93069 1.83366 1.45794 1.94778 1.93144 1.82708 1.96683 1.44710 1.22366 0.94918 0.98137 0.90344 0.94233 0.91086 1.00508 0.85908 0.85568 0.94756 0.92648 0.90683 0.92222 0.93761 0.89334 0.84152 0.86893 0.89659 0.98272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.65 9.36 21.45 0.20 -49.45 16 2 C 0.03 1.57 5.14 84.66 0.44 2.01 16 3 Si 0.93 44.05 29.54 68.60 2.03 46.07 16 4 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 7 C -0.43 -21.78 6.54 25.60 0.17 -21.61 16 8 H 0.04 1.97 6.94 -2.91 -0.02 1.95 16 9 C 0.07 2.99 0.33 -52.87 -0.02 2.97 16 10 C 0.08 3.70 5.57 86.30 0.48 4.18 16 11 N -0.83 -33.46 9.21 -186.73 -1.72 -35.18 16 12 C -0.11 -4.05 4.31 30.68 0.13 -3.92 16 13 C -0.10 -3.43 5.83 30.65 0.18 -3.25 16 14 C 0.04 1.25 5.02 86.32 0.43 1.68 16 15 N -0.51 -19.06 4.46 -896.37 -4.00 -23.06 16 16 C 0.02 0.67 5.74 86.30 0.50 1.16 16 17 C 0.41 13.06 2.83 71.98 0.20 13.26 16 18 F -0.19 -7.26 13.93 44.97 0.63 -6.64 16 19 F -0.19 -5.98 13.86 44.97 0.62 -5.35 16 20 F -0.19 -5.56 17.32 44.97 0.78 -4.78 16 21 C 0.07 3.06 2.47 86.32 0.21 3.27 16 22 H 0.25 13.36 8.31 -92.71 -0.77 12.59 16 23 H 0.07 3.73 6.09 -2.39 -0.01 3.71 16 24 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 25 H 0.33 11.59 9.08 -89.69 -0.81 10.77 16 26 H 0.33 11.94 7.05 -89.70 -0.63 11.31 16 27 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.05 2.07 6.69 -2.39 -0.02 2.06 16 29 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.06 2.25 6.86 -2.39 -0.02 2.23 16 31 H 0.04 1.42 5.54 -2.39 -0.01 1.40 16 32 H 0.09 2.36 7.96 -2.39 -0.02 2.34 16 33 H 0.14 3.24 7.87 -2.39 -0.02 3.22 16 34 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 35 H 0.09 4.31 5.69 -2.39 -0.01 4.29 16 36 H 0.00 -0.03 5.72 -2.39 -0.01 -0.04 16 Total: -1.00 -57.04 279.12 0.94 -56.11 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -0.32 Total: 22.52 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 2.72 Total: -0.23 kcal Atomic # 7 Polarization: -102.18 SS G_CDS: -5.52 Total: -107.70 kcal Atomic # 9 Polarization: -18.80 SS G_CDS: 2.03 Total: -16.77 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -57.04 0.94 -56.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260094398.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.708 kcal (2) G-P(sol) polarization free energy of solvation -57.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds