Wall clock time and date at job start Mon Mar 30 2020 04:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00051 * 2 1 4 4 H 1.48505 * 109.47197 * 89.99812 * 3 2 1 5 5 H 1.48496 * 109.47136 * 209.99915 * 3 2 1 6 6 H 1.48501 * 109.47099 * 330.00128 * 3 2 1 7 7 C 1.37876 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99777 * 174.47538 * 7 2 1 9 9 C 1.50701 * 120.00493 * 354.47649 * 7 2 1 10 10 C 1.53003 * 109.51931 * 304.05690 * 9 7 2 11 11 N 1.46901 * 109.46959 * 305.55153 * 10 9 7 12 12 C 1.53110 * 109.52520 * 183.86479 * 9 7 2 13 13 C 1.53046 * 109.27812 * 297.74640 * 12 9 7 14 14 N 1.46847 * 109.52337 * 300.82191 * 13 12 9 15 15 C 1.46890 * 110.99730 * 185.83673 * 14 13 12 16 16 C 1.53005 * 109.46943 * 158.83922 * 15 14 13 17 17 F 1.39894 * 109.47312 * 65.81394 * 16 15 14 18 18 F 1.39906 * 109.47138 * 185.81524 * 16 15 14 19 19 F 1.39894 * 109.47173 * 305.81225 * 16 15 14 20 20 C 1.46850 * 111.19622 * 61.73936 * 14 13 12 21 21 C 1.53032 * 109.52468 * 298.25907 * 20 14 13 22 22 H 0.96997 * 119.99899 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47365 * 65.55187 * 10 9 7 24 24 H 1.08996 * 109.47143 * 185.55369 * 10 9 7 25 25 H 1.00899 * 111.00179 * 184.59963 * 11 10 9 26 26 H 1.00906 * 111.00111 * 308.55138 * 11 10 9 27 27 H 1.08998 * 109.50688 * 57.68895 * 12 9 7 28 28 H 1.09000 * 109.50492 * 177.80986 * 12 9 7 29 29 H 1.09000 * 109.46260 * 180.80592 * 13 12 9 30 30 H 1.08998 * 109.45724 * 60.84181 * 13 12 9 31 31 H 1.08997 * 109.47733 * 278.84126 * 15 14 13 32 32 H 1.09001 * 109.47483 * 38.83918 * 15 14 13 33 33 H 1.08997 * 109.46100 * 178.23730 * 20 14 13 34 34 H 1.09001 * 109.45701 * 58.27322 * 20 14 13 35 35 H 1.08998 * 109.50505 * 299.23623 * 21 20 14 36 36 H 1.08999 * 109.50232 * 179.12490 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4401 -0.7000 6 1 1.4466 2.6526 -0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0808 -1.1963 -0.0895 9 6 1.2563 -2.4961 0.1267 10 6 0.4043 -2.4751 1.3974 11 7 1.2561 -2.1634 2.5530 12 6 2.2544 -3.6551 0.1974 13 6 3.0616 -3.7067 -1.1018 14 7 2.1505 -3.8904 -2.2387 15 6 2.8994 -4.0828 -3.4876 16 6 2.0048 -4.7767 -4.5169 17 9 0.9488 -3.9276 -4.8646 18 9 2.7552 -5.0792 -5.6583 19 9 1.4927 -5.9576 -3.9690 20 6 1.2132 -2.7659 -2.3550 21 6 0.3509 -2.6863 -1.0933 22 1 -0.4850 0.8400 0.0004 23 1 -0.3713 -1.7151 1.3023 24 1 -0.0591 -3.4512 1.5404 25 1 0.7320 -2.2171 3.4135 26 1 2.0621 -2.7698 2.5821 27 1 2.9295 -3.5031 1.0395 28 1 1.7144 -4.5929 0.3278 29 1 3.7634 -4.5397 -1.0605 30 1 3.6122 -2.7740 -1.2245 31 1 3.2152 -3.1142 -3.8750 32 1 3.7767 -4.7001 -3.2939 33 1 0.5725 -2.9156 -3.2241 34 1 1.7725 -1.8376 -2.4719 35 1 -0.2191 -3.6088 -0.9832 36 1 -0.3341 -1.8421 -1.1734 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260783821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:18 Heat of formation + Delta-G solvation = -150.077059 kcal Electronic energy + Delta-G solvation = -22080.686862 eV Core-core repulsion = 18377.504179 eV Total energy + Delta-G solvation = -3703.182682 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.81784 -47.39666 -47.22864 -38.65592 -35.32612 -31.95381 -31.42175 -29.80738 -28.29414 -25.14018 -24.23500 -22.41987 -22.21205 -20.38415 -18.67318 -18.22998 -18.16973 -17.02813 -15.63098 -15.27459 -14.75561 -14.57804 -14.27017 -14.12621 -14.01091 -13.79872 -13.53851 -13.46728 -13.42817 -13.12110 -12.96729 -12.43883 -12.14667 -11.68512 -11.35633 -11.19818 -11.14074 -10.86432 -10.53188 -10.45807 -10.24227 -9.87246 -9.19812 -8.95390 -8.73476 -8.21853 -7.86431 -7.33378 -5.86762 -3.90096 3.00135 3.36859 3.42623 3.45639 3.94852 4.18455 4.30687 4.52520 4.82691 5.27942 5.42038 5.43356 5.66425 5.81241 5.91196 6.11478 6.28970 6.37306 6.51612 6.58884 6.71711 6.83724 6.91076 7.04211 7.19843 7.29257 7.50513 7.63524 7.75152 7.88224 8.19864 8.34159 8.57514 8.63684 9.03684 9.72775 11.16563 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.024409 B = 0.006705 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.827113 B = 4174.774076 C = 4642.505487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.076 3.924 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.281 1.281 6 H -0.292 1.292 7 C -0.475 4.475 8 H 0.048 0.952 9 C 0.072 3.928 10 C 0.078 3.922 11 N -0.826 5.826 12 C -0.102 4.102 13 C 0.072 3.928 14 N -0.533 5.533 15 C 0.008 3.992 16 C 0.456 3.544 17 F -0.181 7.181 18 F -0.193 7.193 19 F -0.176 7.176 20 C 0.054 3.946 21 C -0.098 4.098 22 H 0.256 0.744 23 H 0.099 0.901 24 H -0.026 1.026 25 H 0.312 0.688 26 H 0.320 0.680 27 H 0.055 0.945 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.024 0.976 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.024 -8.120 -5.068 10.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.125 4.125 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.206 1.206 6 H -0.219 1.219 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.071 3.929 10 C -0.052 4.052 11 N -0.352 5.352 12 C -0.140 4.140 13 C -0.055 4.055 14 N -0.258 5.258 15 C -0.122 4.122 16 C 0.401 3.599 17 F -0.163 7.163 18 F -0.175 7.175 19 F -0.157 7.157 20 C -0.072 4.072 21 C -0.136 4.136 22 H 0.066 0.934 23 H 0.117 0.883 24 H -0.008 1.008 25 H 0.122 0.878 26 H 0.132 0.868 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.660 -7.690 -5.342 10.053 hybrid contribution 0.619 0.551 0.015 0.829 sum 4.279 -7.139 -5.327 9.882 Atomic orbital electron populations 1.69734 1.05740 1.25833 1.51587 1.24714 0.94581 0.98325 0.94842 0.86736 0.79593 0.84354 0.77899 1.20825 1.20647 1.21868 1.20737 0.92283 0.89778 1.48536 0.93370 1.18207 0.91495 0.92414 0.90773 1.21895 0.96666 0.95755 0.90885 1.58658 1.10983 1.61439 1.04162 1.21650 0.98698 0.99095 0.94585 1.21997 0.93678 0.99282 0.90537 1.61948 1.18007 1.45237 1.00577 1.23123 0.95495 1.01532 0.92077 1.20701 0.80133 0.77768 0.81250 1.93121 1.59803 1.70579 1.92788 1.93146 1.76494 1.93711 1.54127 1.93172 1.88102 1.49066 1.85388 1.22414 0.94445 0.90361 1.00017 1.21562 0.98173 1.00074 0.93832 0.93368 0.88345 1.00762 0.87816 0.86849 0.92647 0.93994 0.92851 0.93422 0.90442 0.87405 0.91745 0.93179 0.95731 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.55 9.45 55.43 0.52 -23.02 16 2 C 0.08 1.96 5.13 -17.82 -0.09 1.86 16 3 Si 0.88 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.48 -11.72 5.71 -34.44 -0.20 -11.92 16 8 H 0.05 1.22 6.73 -52.49 -0.35 0.87 16 9 C 0.07 1.59 0.33 -155.54 -0.05 1.54 16 10 C 0.08 1.75 5.42 -3.82 -0.02 1.73 16 11 N -0.83 -16.90 9.07 -10.37 -0.09 -16.99 16 12 C -0.10 -1.97 4.58 -26.65 -0.12 -2.09 16 13 C 0.07 1.26 5.21 -3.83 -0.02 1.24 16 14 N -0.53 -9.33 4.40 -234.67 -1.03 -10.36 16 15 C 0.01 0.12 5.12 -3.83 -0.02 0.10 16 16 C 0.46 6.68 3.28 37.16 0.12 6.80 16 17 F -0.18 -2.92 14.67 2.25 0.03 -2.89 16 18 F -0.19 -2.63 17.32 2.25 0.04 -2.59 16 19 F -0.18 -2.78 17.13 2.25 0.04 -2.74 16 20 C 0.05 1.08 5.02 -3.83 -0.02 1.06 16 21 C -0.10 -2.17 4.73 -26.65 -0.13 -2.30 16 22 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 23 H 0.10 2.50 6.16 -51.93 -0.32 2.19 16 24 H -0.03 -0.55 8.14 -51.93 -0.42 -0.97 16 25 H 0.31 5.64 9.08 -39.29 -0.36 5.28 16 26 H 0.32 6.02 7.20 -39.29 -0.28 5.74 16 27 H 0.05 1.03 6.72 -51.93 -0.35 0.68 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.80 7.92 -51.93 -0.41 0.39 16 30 H 0.05 0.90 6.70 -51.93 -0.35 0.55 16 31 H 0.08 1.05 7.98 -51.93 -0.41 0.64 16 32 H 0.11 1.27 7.77 -51.93 -0.40 0.87 16 33 H 0.06 1.24 5.47 -51.93 -0.28 0.96 16 34 H 0.05 1.09 7.31 -51.93 -0.38 0.71 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 2.44 6.16 -51.93 -0.32 2.12 16 LS Contribution 285.38 15.07 4.30 4.30 Total: -1.00 -26.33 285.38 -6.38 -32.72 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -4.63 Total: 7.58 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -0.55 Total: -1.97 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.60 Total: -50.38 kcal Atomic # 9 Polarization: -8.33 SS G_CDS: 0.11 Total: -8.22 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -26.33 -6.38 -32.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260783821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.361 kcal (2) G-P(sol) polarization free energy of solvation -26.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds