Wall clock time and date at job start Mon Mar 30 2020 04:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00051 * 2 1 4 4 H 1.48505 * 109.47197 * 89.99812 * 3 2 1 5 5 H 1.48496 * 109.47136 * 209.99915 * 3 2 1 6 6 H 1.48501 * 109.47099 * 330.00128 * 3 2 1 7 7 C 1.37876 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99777 * 174.47538 * 7 2 1 9 9 C 1.50701 * 120.00493 * 354.47649 * 7 2 1 10 10 C 1.53003 * 109.51931 * 304.05690 * 9 7 2 11 11 N 1.46901 * 109.46959 * 305.55153 * 10 9 7 12 12 C 1.53110 * 109.52520 * 183.86479 * 9 7 2 13 13 C 1.53046 * 109.27812 * 297.74640 * 12 9 7 14 14 N 1.46847 * 109.52337 * 300.82191 * 13 12 9 15 15 C 1.46890 * 110.99730 * 185.83673 * 14 13 12 16 16 C 1.53005 * 109.46943 * 158.83922 * 15 14 13 17 17 F 1.39894 * 109.47312 * 65.81394 * 16 15 14 18 18 F 1.39906 * 109.47138 * 185.81524 * 16 15 14 19 19 F 1.39894 * 109.47173 * 305.81225 * 16 15 14 20 20 C 1.46850 * 111.19622 * 61.73936 * 14 13 12 21 21 C 1.53032 * 109.52468 * 298.25907 * 20 14 13 22 22 H 0.96997 * 119.99899 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47365 * 65.55187 * 10 9 7 24 24 H 1.08996 * 109.47143 * 185.55369 * 10 9 7 25 25 H 1.00899 * 111.00179 * 184.59963 * 11 10 9 26 26 H 1.00906 * 111.00111 * 308.55138 * 11 10 9 27 27 H 1.08998 * 109.50688 * 57.68895 * 12 9 7 28 28 H 1.09000 * 109.50492 * 177.80986 * 12 9 7 29 29 H 1.09000 * 109.46260 * 180.80592 * 13 12 9 30 30 H 1.08998 * 109.45724 * 60.84181 * 13 12 9 31 31 H 1.08997 * 109.47733 * 278.84126 * 15 14 13 32 32 H 1.09001 * 109.47483 * 38.83918 * 15 14 13 33 33 H 1.08997 * 109.46100 * 178.23730 * 20 14 13 34 34 H 1.09001 * 109.45701 * 58.27322 * 20 14 13 35 35 H 1.08998 * 109.50505 * 299.23623 * 21 20 14 36 36 H 1.08999 * 109.50232 * 179.12490 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4401 -0.7000 6 1 1.4466 2.6526 -0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0808 -1.1963 -0.0895 9 6 1.2563 -2.4961 0.1267 10 6 0.4043 -2.4751 1.3974 11 7 1.2561 -2.1634 2.5530 12 6 2.2544 -3.6551 0.1974 13 6 3.0616 -3.7067 -1.1018 14 7 2.1505 -3.8904 -2.2387 15 6 2.8994 -4.0828 -3.4876 16 6 2.0048 -4.7767 -4.5169 17 9 0.9488 -3.9276 -4.8646 18 9 2.7552 -5.0792 -5.6583 19 9 1.4927 -5.9576 -3.9690 20 6 1.2132 -2.7659 -2.3550 21 6 0.3509 -2.6863 -1.0933 22 1 -0.4850 0.8400 0.0004 23 1 -0.3713 -1.7151 1.3023 24 1 -0.0591 -3.4512 1.5404 25 1 0.7320 -2.2171 3.4135 26 1 2.0621 -2.7698 2.5821 27 1 2.9295 -3.5031 1.0395 28 1 1.7144 -4.5929 0.3278 29 1 3.7634 -4.5397 -1.0605 30 1 3.6122 -2.7740 -1.2245 31 1 3.2152 -3.1142 -3.8750 32 1 3.7767 -4.7001 -3.2939 33 1 0.5725 -2.9156 -3.2241 34 1 1.7725 -1.8376 -2.4719 35 1 -0.2191 -3.6088 -0.9832 36 1 -0.3341 -1.8421 -1.1734 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260783821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:18 Heat of formation + Delta-G solvation = -167.615760 kcal Electronic energy + Delta-G solvation = -22081.447397 eV Core-core repulsion = 18377.504179 eV Total energy + Delta-G solvation = -3703.943217 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.98663 -48.55852 -48.41854 -40.21682 -36.89785 -33.81788 -32.98138 -31.39452 -29.70947 -26.95816 -25.87923 -23.79971 -23.64899 -21.97389 -20.40446 -19.43608 -19.37042 -18.23559 -17.39788 -16.85660 -16.62102 -15.96016 -15.69879 -15.43282 -15.31236 -15.15901 -15.04423 -14.78299 -14.64826 -14.57358 -14.49842 -14.01372 -13.65048 -13.30535 -12.88355 -12.81448 -12.72094 -12.52156 -12.37310 -12.20325 -11.97135 -11.66724 -10.86959 -10.69956 -10.48447 -10.16543 -9.30325 -9.00456 -7.82661 -5.88873 1.45255 1.50758 1.52792 1.84377 2.57568 2.69947 3.00930 3.17463 3.45691 3.60166 4.13933 4.20996 4.23211 4.34501 4.47068 4.59157 4.67027 4.81796 4.87521 4.97608 5.09687 5.26136 5.31507 5.36812 5.49911 5.66985 5.81455 5.85466 6.09784 6.17521 6.38649 6.54175 6.83933 7.04025 7.15458 7.74483 9.17716 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.024409 B = 0.006705 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.827113 B = 4174.774076 C = 4642.505487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.036 3.964 3 Si 0.926 3.074 4 H -0.290 1.290 5 H -0.276 1.276 6 H -0.298 1.298 7 C -0.466 4.466 8 H 0.042 0.958 9 C 0.066 3.934 10 C 0.085 3.915 11 N -0.834 5.834 12 C -0.098 4.098 13 C 0.074 3.926 14 N -0.537 5.537 15 C 0.009 3.991 16 C 0.459 3.541 17 F -0.193 7.193 18 F -0.185 7.185 19 F -0.183 7.183 20 C 0.066 3.934 21 C -0.094 4.094 22 H 0.249 0.751 23 H 0.064 0.936 24 H -0.019 1.019 25 H 0.326 0.674 26 H 0.331 0.669 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.034 0.966 31 H 0.087 0.913 32 H 0.141 0.859 33 H 0.068 0.932 34 H 0.028 0.972 35 H 0.023 0.977 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.694 -9.377 -5.346 12.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.162 4.162 3 Si 0.756 3.244 4 H -0.216 1.216 5 H -0.201 1.201 6 H -0.224 1.224 7 C -0.504 4.504 8 H 0.060 0.940 9 C 0.065 3.935 10 C -0.046 4.046 11 N -0.363 5.363 12 C -0.136 4.136 13 C -0.052 4.052 14 N -0.262 5.262 15 C -0.121 4.121 16 C 0.404 3.596 17 F -0.175 7.175 18 F -0.166 7.166 19 F -0.164 7.164 20 C -0.061 4.061 21 C -0.133 4.133 22 H 0.059 0.941 23 H 0.083 0.917 24 H -0.001 1.001 25 H 0.137 0.863 26 H 0.145 0.855 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.159 0.841 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.041 0.959 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.349 -8.958 -5.619 11.850 hybrid contribution 0.102 0.903 0.099 0.915 sum 5.451 -8.054 -5.520 11.183 Atomic orbital electron populations 1.69883 1.06446 1.25541 1.52893 1.25204 0.95055 1.00343 0.95631 0.86080 0.78914 0.82258 0.77155 1.21650 1.20069 1.22436 1.20901 0.91950 0.90706 1.46840 0.93965 1.18244 0.92007 0.92721 0.90534 1.21675 0.96231 0.94861 0.91823 1.58544 1.11436 1.61935 1.04356 1.21564 0.98233 0.97689 0.96132 1.21992 0.93595 1.00151 0.89485 1.61843 1.18556 1.43539 1.02261 1.23259 0.95861 1.02680 0.90284 1.20749 0.79868 0.77398 0.81580 1.93100 1.60510 1.70947 1.92896 1.93164 1.76147 1.93620 1.53703 1.93162 1.88259 1.49463 1.85522 1.22148 0.94594 0.90485 0.98866 1.21430 0.98133 0.98519 0.95251 0.94102 0.91739 1.00068 0.86292 0.85549 0.91925 0.93569 0.89250 0.94747 0.89507 0.84110 0.91388 0.95352 0.95873 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.02 9.45 21.45 0.20 -48.81 16 2 C 0.04 1.84 5.13 84.65 0.43 2.28 16 3 Si 0.93 43.14 29.54 68.60 2.03 45.17 16 4 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 7 C -0.47 -22.72 5.71 25.60 0.15 -22.57 16 8 H 0.04 2.09 6.73 -2.91 -0.02 2.07 16 9 C 0.07 2.86 0.33 -52.85 -0.02 2.84 16 10 C 0.09 3.77 5.42 86.30 0.47 4.24 16 11 N -0.83 -33.19 9.07 -186.71 -1.69 -34.88 16 12 C -0.10 -3.55 4.58 30.65 0.14 -3.41 16 13 C 0.07 2.37 5.21 86.33 0.45 2.82 16 14 N -0.54 -17.49 4.40 -896.37 -3.95 -21.44 16 15 C 0.01 0.23 5.12 86.31 0.44 0.67 16 16 C 0.46 12.30 3.28 71.98 0.24 12.54 16 17 F -0.19 -5.93 14.67 44.97 0.66 -5.27 16 18 F -0.18 -4.53 17.32 44.97 0.78 -3.75 16 19 F -0.18 -5.34 17.13 44.97 0.77 -4.57 16 20 C 0.07 2.60 5.02 86.32 0.43 3.03 16 21 C -0.09 -4.20 4.73 30.64 0.14 -4.06 16 22 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 23 H 0.06 3.34 6.16 -2.38 -0.01 3.32 16 24 H -0.02 -0.79 8.14 -2.39 -0.02 -0.81 16 25 H 0.33 11.39 9.08 -89.69 -0.81 10.58 16 26 H 0.33 11.85 7.20 -89.69 -0.65 11.21 16 27 H 0.06 2.16 6.72 -2.39 -0.02 2.14 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.09 2.25 7.92 -2.39 -0.02 2.23 16 30 H 0.03 1.20 6.70 -2.39 -0.02 1.18 16 31 H 0.09 2.10 7.98 -2.39 -0.02 2.08 16 32 H 0.14 2.66 7.77 -2.39 -0.02 2.64 16 33 H 0.07 2.59 5.47 -2.39 -0.01 2.58 16 34 H 0.03 1.22 7.31 -2.39 -0.02 1.21 16 35 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 3.36 6.16 -2.39 -0.01 3.35 16 Total: -1.00 -55.66 285.38 1.34 -54.32 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -0.34 Total: 20.84 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 2.88 Total: -1.61 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -5.44 Total: -105.13 kcal Atomic # 9 Polarization: -15.80 SS G_CDS: 2.21 Total: -13.59 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -55.66 1.34 -54.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260783821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.293 kcal (2) G-P(sol) polarization free energy of solvation -55.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds