Wall clock time and date at job start Mon Mar 30 2020 04:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86806 * 119.99976 * 2 1 4 4 H 1.48494 * 109.46745 * 269.99674 * 3 2 1 5 5 H 1.48501 * 109.47072 * 29.99742 * 3 2 1 6 6 H 1.48495 * 109.46744 * 149.99855 * 3 2 1 7 7 C 1.37873 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99748 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99922 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47151 * 60.00125 * 9 7 2 11 11 N 1.46896 * 109.46819 * 180.02562 * 9 7 2 12 12 C 1.46847 * 111.00466 * 48.95465 * 11 9 7 13 13 C 1.53044 * 109.52534 * 174.15798 * 12 11 9 14 14 C 1.53120 * 109.27141 * 59.18152 * 13 12 11 15 15 C 1.53010 * 109.51783 * 182.44041 * 14 13 12 16 16 N 1.46899 * 109.47092 * 185.00375 * 15 14 13 17 17 C 1.53112 * 109.16540 * 302.34145 * 14 13 12 18 18 C 1.46847 * 111.00026 * 284.74274 * 11 9 7 19 19 C 1.53001 * 109.47163 * 299.99841 * 9 7 2 20 20 F 1.39900 * 109.47257 * 306.81017 * 19 9 7 21 21 F 1.39905 * 109.46949 * 66.80645 * 19 9 7 22 22 F 1.39893 * 109.46961 * 186.80745 * 19 9 7 23 23 H 0.97006 * 119.99678 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.45952 * 54.14788 * 12 11 9 25 25 H 1.08992 * 109.45406 * 294.17248 * 12 11 9 26 26 H 1.08999 * 109.50014 * 299.24489 * 13 12 11 27 27 H 1.08998 * 109.49943 * 179.11944 * 13 12 11 28 28 H 1.08994 * 109.52247 * 62.25759 * 14 13 12 29 29 H 1.09004 * 109.46952 * 304.99834 * 15 14 13 30 30 H 1.09000 * 109.47189 * 64.99890 * 15 14 13 31 31 H 1.00903 * 110.99754 * 56.04342 * 16 15 14 32 32 H 1.00897 * 110.99671 * 179.97438 * 16 15 14 33 33 H 1.08995 * 109.50826 * 177.59896 * 17 14 13 34 34 H 1.08999 * 109.50841 * 297.71901 * 17 14 13 35 35 H 1.08998 * 109.46561 * 305.86057 * 18 11 9 36 36 H 1.09007 * 109.46098 * 65.82590 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 2.2056 -3.6157 0.0018 12 6 3.2311 -3.4303 1.0364 13 6 4.1182 -4.6754 1.1063 14 6 4.7772 -4.9036 -0.2569 15 6 5.6176 -6.1814 -0.2110 16 7 6.3438 -6.3357 -1.4785 17 6 3.6885 -5.0453 -1.3241 18 6 2.8138 -3.7895 -1.3235 19 6 0.3709 -2.5799 1.2495 20 9 1.1529 -2.3506 2.3866 21 9 -0.6365 -1.6121 1.1734 22 9 -0.2083 -3.8507 1.3303 23 1 -0.4850 0.8401 -0.0004 24 1 2.7491 -3.2732 2.0014 25 1 3.8424 -2.5622 0.7902 26 1 3.5096 -5.5417 1.3658 27 1 4.8888 -4.5311 1.8635 28 1 5.4165 -4.0547 -0.4990 29 1 6.3308 -6.1179 0.6109 30 1 4.9643 -7.0407 -0.0595 31 1 6.9078 -5.5221 -1.6734 32 1 6.9069 -7.1729 -1.4730 33 1 4.1521 -5.1654 -2.3032 34 1 3.0732 -5.9174 -1.1028 35 1 2.0288 -3.8933 -2.0726 36 1 3.4272 -2.9196 -1.5585 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261156259.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:14 Heat of formation + Delta-G solvation = -142.729816 kcal Electronic energy + Delta-G solvation = -22249.663689 eV Core-core repulsion = 18546.799608 eV Total energy + Delta-G solvation = -3702.864082 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.34322 -45.99001 -45.59156 -38.64991 -35.56178 -33.15585 -31.56517 -30.20547 -28.01609 -25.08169 -24.39462 -22.46384 -21.55600 -20.47539 -19.23420 -17.25973 -16.79519 -16.52609 -15.88404 -15.30945 -14.88926 -14.57899 -14.22473 -14.16261 -13.82005 -13.32203 -12.95514 -12.74808 -12.52791 -12.38683 -12.25378 -12.17765 -11.95251 -11.82541 -11.51700 -11.27976 -11.08930 -10.83260 -10.64056 -10.35550 -10.32347 -10.05922 -9.81738 -9.75143 -9.33044 -8.67668 -8.62446 -7.32559 -6.13702 -4.38179 3.19660 3.27356 3.30081 4.25348 4.49754 4.55883 4.82997 5.00658 5.06509 5.18753 5.37114 5.64252 5.80878 5.84597 5.89978 5.95198 5.98997 6.10313 6.20301 6.25869 6.36964 6.47827 6.52135 6.63755 6.73474 6.79809 6.92126 7.06972 7.10431 7.38147 7.66578 7.72450 7.93813 8.07921 8.65586 9.30810 10.76327 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.022027 B = 0.007404 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.885094 B = 3780.754441 C = 4479.843801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.068 3.932 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.561 4.561 8 H 0.073 0.927 9 C 0.180 3.820 10 H 0.072 0.928 11 N -0.532 5.532 12 C 0.044 3.956 13 C -0.111 4.111 14 C -0.085 4.085 15 C 0.067 3.933 16 N -0.849 5.849 17 C -0.098 4.098 18 C 0.065 3.935 19 C 0.442 3.558 20 F -0.202 7.202 21 F -0.146 7.146 22 F -0.219 7.219 23 H 0.266 0.734 24 H 0.087 0.913 25 H 0.043 0.957 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.021 0.979 30 H 0.070 0.930 31 H 0.338 0.662 32 H 0.336 0.664 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.944 -7.973 -0.306 11.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.599 4.599 8 H 0.091 0.909 9 C 0.071 3.929 10 H 0.090 0.910 11 N -0.256 5.256 12 C -0.084 4.084 13 C -0.149 4.149 14 C -0.104 4.104 15 C -0.064 4.064 16 N -0.378 5.378 17 C -0.136 4.136 18 C -0.063 4.063 19 C 0.387 3.613 20 F -0.184 7.184 21 F -0.127 7.127 22 F -0.201 7.201 23 H 0.076 0.924 24 H 0.105 0.895 25 H 0.061 0.939 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.039 0.961 30 H 0.089 0.911 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.742 -8.320 -0.499 10.721 hybrid contribution 1.554 1.783 0.704 2.468 sum 8.296 -6.537 0.205 10.564 Atomic orbital electron populations 1.70342 1.05697 1.27048 1.45069 1.25115 0.95024 0.99857 0.94028 0.86445 0.79878 0.82689 0.78232 1.20383 1.20890 1.19742 1.21351 0.93869 0.89724 1.54918 0.90881 1.20276 0.91433 0.89791 0.91429 0.91008 1.62124 1.16554 1.42259 1.04621 1.22320 0.93538 0.95298 0.97248 1.21653 0.98161 0.99546 0.95543 1.21206 0.96586 0.96148 0.96488 1.21877 0.96249 0.99010 0.89232 1.58706 1.35756 1.07630 1.35728 1.21513 0.95731 0.98086 0.98251 1.21908 0.97011 0.96434 0.90958 1.22209 0.80637 0.71853 0.86616 1.92885 1.75012 1.94485 1.56036 1.93342 1.61929 1.61428 1.95994 1.93020 1.86377 1.43708 1.96983 0.92380 0.89474 0.93900 0.91703 0.92655 0.91966 0.96088 0.91117 0.84969 0.85257 0.91362 0.91995 0.91633 0.94497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.35 9.61 55.43 0.53 -22.82 16 2 C 0.07 1.79 5.28 -17.82 -0.09 1.69 16 3 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.56 -14.49 6.92 -34.44 -0.24 -14.73 16 8 H 0.07 1.88 5.84 -52.49 -0.31 1.57 16 9 C 0.18 4.40 1.98 -68.86 -0.14 4.27 16 10 H 0.07 1.88 7.88 -51.93 -0.41 1.47 16 11 N -0.53 -11.18 4.37 -228.07 -1.00 -12.18 16 12 C 0.04 0.87 4.61 -3.83 -0.02 0.85 16 13 C -0.11 -1.73 5.38 -26.65 -0.14 -1.87 16 14 C -0.09 -1.21 2.40 -90.49 -0.22 -1.42 16 15 C 0.07 0.78 6.18 -3.82 -0.02 0.76 16 16 N -0.85 -8.78 9.14 -10.36 -0.09 -8.87 16 17 C -0.10 -1.51 5.24 -26.65 -0.14 -1.65 16 18 C 0.07 1.21 5.24 -3.83 -0.02 1.19 16 19 C 0.44 11.14 2.72 37.16 0.10 11.24 16 20 F -0.20 -5.04 13.94 2.25 0.03 -5.01 16 21 F -0.15 -3.98 13.28 2.25 0.03 -3.95 16 22 F -0.22 -5.26 17.11 2.25 0.04 -5.22 16 23 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 24 H 0.09 1.86 5.22 -51.93 -0.27 1.59 16 25 H 0.04 0.90 6.15 -51.93 -0.32 0.58 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.34 3.23 8.99 -39.29 -0.35 2.87 16 32 H 0.34 2.78 9.08 -39.29 -0.36 2.42 16 33 H 0.07 1.00 7.84 -51.93 -0.41 0.59 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.22 7.96 -51.93 -0.41 0.81 16 36 H 0.04 0.73 7.68 -51.92 -0.40 0.33 16 LS Contribution 288.05 15.07 4.34 4.34 Total: -1.00 -27.46 288.05 -6.98 -34.43 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -4.91 Total: 3.34 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -0.93 Total: 0.32 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -0.56 Total: -43.87 kcal Atomic # 9 Polarization: -14.28 SS G_CDS: 0.10 Total: -14.18 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.46 -6.98 -34.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261156259.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.296 kcal (2) G-P(sol) polarization free energy of solvation -27.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds