Wall clock time and date at job start Mon Mar 30 2020 04:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86806 * 119.99976 * 2 1 4 4 H 1.48494 * 109.46745 * 269.99674 * 3 2 1 5 5 H 1.48501 * 109.47072 * 29.99742 * 3 2 1 6 6 H 1.48495 * 109.46744 * 149.99855 * 3 2 1 7 7 C 1.37873 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99748 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99922 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47151 * 60.00125 * 9 7 2 11 11 N 1.46896 * 109.46819 * 180.02562 * 9 7 2 12 12 C 1.46847 * 111.00466 * 48.95465 * 11 9 7 13 13 C 1.53044 * 109.52534 * 174.15798 * 12 11 9 14 14 C 1.53120 * 109.27141 * 59.18152 * 13 12 11 15 15 C 1.53010 * 109.51783 * 182.44041 * 14 13 12 16 16 N 1.46899 * 109.47092 * 185.00375 * 15 14 13 17 17 C 1.53112 * 109.16540 * 302.34145 * 14 13 12 18 18 C 1.46847 * 111.00026 * 284.74274 * 11 9 7 19 19 C 1.53001 * 109.47163 * 299.99841 * 9 7 2 20 20 F 1.39900 * 109.47257 * 306.81017 * 19 9 7 21 21 F 1.39905 * 109.46949 * 66.80645 * 19 9 7 22 22 F 1.39893 * 109.46961 * 186.80745 * 19 9 7 23 23 H 0.97006 * 119.99678 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.45952 * 54.14788 * 12 11 9 25 25 H 1.08992 * 109.45406 * 294.17248 * 12 11 9 26 26 H 1.08999 * 109.50014 * 299.24489 * 13 12 11 27 27 H 1.08998 * 109.49943 * 179.11944 * 13 12 11 28 28 H 1.08994 * 109.52247 * 62.25759 * 14 13 12 29 29 H 1.09004 * 109.46952 * 304.99834 * 15 14 13 30 30 H 1.09000 * 109.47189 * 64.99890 * 15 14 13 31 31 H 1.00903 * 110.99754 * 56.04342 * 16 15 14 32 32 H 1.00897 * 110.99671 * 179.97438 * 16 15 14 33 33 H 1.08995 * 109.50826 * 177.59896 * 17 14 13 34 34 H 1.08999 * 109.50841 * 297.71901 * 17 14 13 35 35 H 1.08998 * 109.46561 * 305.86057 * 18 11 9 36 36 H 1.09007 * 109.46098 * 65.82590 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 2.2056 -3.6157 0.0018 12 6 3.2311 -3.4303 1.0364 13 6 4.1182 -4.6754 1.1063 14 6 4.7772 -4.9036 -0.2569 15 6 5.6176 -6.1814 -0.2110 16 7 6.3438 -6.3357 -1.4785 17 6 3.6885 -5.0453 -1.3241 18 6 2.8138 -3.7895 -1.3235 19 6 0.3709 -2.5799 1.2495 20 9 1.1529 -2.3506 2.3866 21 9 -0.6365 -1.6121 1.1734 22 9 -0.2083 -3.8507 1.3303 23 1 -0.4850 0.8401 -0.0004 24 1 2.7491 -3.2732 2.0014 25 1 3.8424 -2.5622 0.7902 26 1 3.5096 -5.5417 1.3658 27 1 4.8888 -4.5311 1.8635 28 1 5.4165 -4.0547 -0.4990 29 1 6.3308 -6.1179 0.6109 30 1 4.9643 -7.0407 -0.0595 31 1 6.9078 -5.5221 -1.6734 32 1 6.9069 -7.1729 -1.4730 33 1 4.1521 -5.1654 -2.3032 34 1 3.0732 -5.9174 -1.1028 35 1 2.0288 -3.8933 -2.0726 36 1 3.4272 -2.9196 -1.5585 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261156259.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:13 Heat of formation + Delta-G solvation = -161.333139 kcal Electronic energy + Delta-G solvation = -22250.470390 eV Core-core repulsion = 18546.799608 eV Total energy + Delta-G solvation = -3703.670782 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.38201 -48.00570 -47.68063 -40.10128 -36.91330 -34.84707 -33.01935 -31.64069 -29.68889 -26.85034 -25.97903 -23.89270 -23.14012 -22.03203 -20.64578 -19.22890 -18.79117 -18.52025 -17.37666 -16.82136 -16.61704 -15.86959 -15.54381 -15.46880 -15.37384 -15.01817 -14.78403 -14.65805 -14.39631 -14.21483 -14.11292 -13.93750 -13.77513 -13.24594 -12.95727 -12.93319 -12.71967 -12.61555 -12.24384 -12.12577 -11.89785 -11.68688 -11.42675 -11.14373 -10.88946 -10.64424 -9.47886 -9.08452 -8.14399 -6.46059 1.37916 1.40098 1.49573 2.33533 2.52852 2.97486 3.10759 3.68150 3.85072 3.90321 3.98327 3.99874 4.21329 4.30443 4.50663 4.59765 4.63235 4.73207 4.79772 4.87278 4.93915 5.02334 5.12776 5.21329 5.24933 5.32447 5.42347 5.58148 5.64073 5.81256 6.11493 6.31873 6.43403 6.64484 6.70031 7.25890 8.73958 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.022027 B = 0.007404 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.885094 B = 3780.754441 C = 4479.843801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.022 3.978 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.566 4.566 8 H 0.072 0.928 9 C 0.183 3.817 10 H 0.049 0.951 11 N -0.532 5.532 12 C 0.045 3.955 13 C -0.102 4.102 14 C -0.081 4.081 15 C 0.076 3.924 16 N -0.856 5.856 17 C -0.086 4.086 18 C 0.065 3.935 19 C 0.440 3.560 20 F -0.201 7.201 21 F -0.160 7.160 22 F -0.213 7.213 23 H 0.266 0.734 24 H 0.068 0.932 25 H 0.027 0.973 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.344 0.656 32 H 0.349 0.651 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.820 -8.737 -0.381 13.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.183 4.183 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.603 4.603 8 H 0.090 0.910 9 C 0.073 3.927 10 H 0.067 0.933 11 N -0.256 5.256 12 C -0.083 4.083 13 C -0.141 4.141 14 C -0.100 4.100 15 C -0.055 4.055 16 N -0.386 5.386 17 C -0.124 4.124 18 C -0.063 4.063 19 C 0.385 3.615 20 F -0.183 7.183 21 F -0.141 7.141 22 F -0.195 7.195 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.045 0.955 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.156 0.844 32 H 0.163 0.837 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 8.638 -9.107 -0.581 12.565 hybrid contribution 0.952 1.982 0.722 2.314 sum 9.590 -7.124 0.141 11.947 Atomic orbital electron populations 1.70456 1.06922 1.27702 1.46001 1.25857 0.95770 1.02956 0.93759 0.85510 0.78637 0.78863 0.78469 1.19575 1.20827 1.19379 1.21525 0.93863 0.90439 1.54515 0.91034 1.20082 0.91785 0.90803 0.90016 0.93317 1.62169 1.16935 1.40362 1.06179 1.22305 0.93261 0.97005 0.95702 1.21591 0.97971 0.97230 0.97266 1.21148 0.96305 0.97676 0.94856 1.21700 0.96239 0.97190 0.90355 1.58652 1.36394 1.08652 1.34943 1.21421 0.95495 0.95898 0.99553 1.21991 0.97078 0.97676 0.89576 1.22274 0.80471 0.71771 0.86974 1.92888 1.74936 1.94518 1.55964 1.93312 1.62566 1.62126 1.96091 1.93020 1.86305 1.43154 1.96983 0.92425 0.91358 0.95517 0.91532 0.90503 0.92267 0.94739 0.91120 0.84364 0.83713 0.90127 0.92082 0.92196 0.95871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.87 9.61 21.45 0.21 -48.66 16 2 C 0.02 1.14 5.28 84.65 0.45 1.59 16 3 Si 0.96 42.23 29.54 68.60 2.03 44.25 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.57 -29.49 6.92 25.60 0.18 -29.32 16 8 H 0.07 3.70 5.84 -2.91 -0.02 3.68 16 9 C 0.18 9.12 1.98 44.17 0.09 9.20 16 10 H 0.05 2.64 7.88 -2.39 -0.02 2.62 16 11 N -0.53 -22.41 4.37 -875.49 -3.83 -26.23 16 12 C 0.05 1.76 4.61 86.33 0.40 2.16 16 13 C -0.10 -2.98 5.38 30.65 0.16 -2.82 16 14 C -0.08 -2.09 2.40 -10.71 -0.03 -2.12 16 15 C 0.08 1.52 6.18 86.31 0.53 2.05 16 16 N -0.86 -14.97 9.14 -186.70 -1.71 -16.67 16 17 C -0.09 -2.50 5.24 30.65 0.16 -2.33 16 18 C 0.06 2.39 5.24 86.33 0.45 2.84 16 19 C 0.44 22.47 2.72 71.98 0.20 22.67 16 20 F -0.20 -10.09 13.94 44.97 0.63 -9.47 16 21 F -0.16 -8.87 13.28 44.97 0.60 -8.27 16 22 F -0.21 -10.26 17.11 44.97 0.77 -9.49 16 23 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 24 H 0.07 2.90 5.22 -2.38 -0.01 2.89 16 25 H 0.03 1.12 6.15 -2.39 -0.01 1.10 16 26 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.34 5.51 8.99 -89.69 -0.81 4.70 16 32 H 0.35 4.65 9.08 -89.70 -0.81 3.83 16 33 H 0.08 2.17 7.84 -2.39 -0.02 2.16 16 34 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.06 2.24 7.96 -2.39 -0.02 2.23 16 36 H 0.02 0.91 7.68 -2.38 -0.02 0.90 16 Total: -1.00 -57.99 288.05 0.77 -57.21 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -0.51 Total: 13.41 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 2.59 Total: 3.92 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -5.33 Total: -91.57 kcal Atomic # 9 Polarization: -29.23 SS G_CDS: 1.99 Total: -27.24 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -57.99 0.77 -57.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261156259.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.118 kcal (2) G-P(sol) polarization free energy of solvation -57.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds