Wall clock time and date at job start Mon Mar 30 2020 04:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00253 * 2 1 4 4 H 1.48499 * 109.47082 * 270.00121 * 3 2 1 5 5 H 1.48497 * 109.46699 * 30.00013 * 3 2 1 6 6 H 1.48497 * 109.47192 * 149.99814 * 3 2 1 7 7 C 1.37880 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00114 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99972 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.46784 * 59.99901 * 9 7 2 11 11 N 1.46896 * 109.46809 * 180.02562 * 9 7 2 12 12 C 1.46846 * 111.00413 * 70.02917 * 11 9 7 13 13 C 1.53037 * 109.52319 * 185.83635 * 12 11 9 14 14 C 1.53120 * 109.27967 * 300.81778 * 13 12 11 15 15 C 1.53120 * 109.15763 * 57.66023 * 14 13 12 16 16 H 1.09004 * 109.50653 * 62.28238 * 15 14 13 17 17 C 1.52995 * 109.53570 * 182.38275 * 15 14 13 18 18 N 1.46904 * 109.47207 * 294.82080 * 17 15 14 19 19 C 1.46854 * 110.99730 * 194.23941 * 11 9 7 20 20 C 1.53002 * 109.47027 * 299.99987 * 9 7 2 21 21 F 1.39895 * 109.47246 * 306.70571 * 20 9 7 22 22 F 1.39907 * 109.46667 * 186.70889 * 20 9 7 23 23 F 1.39895 * 109.46967 * 66.71287 * 20 9 7 24 24 H 0.96997 * 119.99711 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46191 * 305.85657 * 12 11 9 26 26 H 1.09000 * 109.46008 * 65.82320 * 12 11 9 27 27 H 1.09001 * 109.50109 * 180.87983 * 13 12 11 28 28 H 1.08996 * 109.53285 * 60.78464 * 13 12 11 29 29 H 1.08993 * 109.52830 * 297.75124 * 14 13 12 30 30 H 1.08999 * 109.57213 * 177.59170 * 14 13 12 31 31 H 1.09003 * 109.47015 * 54.82022 * 17 15 14 32 32 H 1.09006 * 109.47400 * 174.81898 * 17 15 14 33 33 H 1.00904 * 110.99888 * 56.04312 * 18 17 15 34 34 H 1.00892 * 110.99914 * 179.97438 * 18 17 15 35 35 H 1.08994 * 109.46057 * 294.17858 * 19 11 9 36 36 H 1.09002 * 109.46263 * 54.15720 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 2.2055 -3.6157 -0.0005 12 6 2.9035 -3.7115 1.2879 13 6 3.9883 -4.7876 1.2032 14 6 3.3421 -6.1303 0.8505 15 6 2.5816 -5.9902 -0.4710 16 1 3.2808 -5.7387 -1.2685 17 6 1.8831 -7.3106 -0.8018 18 7 2.8917 -8.3501 -1.0473 19 6 1.5374 -4.8793 -0.3378 20 6 0.3718 -2.5805 1.2491 21 9 1.1551 -2.3540 2.3858 22 9 -0.2092 -3.8507 1.3286 23 9 -0.6343 -1.6113 1.1752 24 1 -0.4849 0.8400 0.0004 25 1 3.3619 -2.7514 1.5249 26 1 2.1901 -3.9757 2.0686 27 1 4.4957 -4.8693 2.1644 28 1 4.7101 -4.5175 0.4325 29 1 2.6494 -6.4199 1.6406 30 1 4.1153 -6.8916 0.7469 31 1 1.2518 -7.6075 0.0358 32 1 1.2683 -7.1832 -1.6928 33 1 3.5153 -8.4421 -0.2593 34 1 2.4552 -9.2326 -1.2676 35 1 0.8305 -5.1379 0.4505 36 1 1.0040 -4.7674 -1.2817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261167937.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:34 Heat of formation + Delta-G solvation = -136.194316 kcal Electronic energy + Delta-G solvation = -22533.373901 eV Core-core repulsion = 18830.793220 eV Total energy + Delta-G solvation = -3702.580681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.64172 -46.24603 -45.73008 -38.68357 -35.39268 -33.32388 -31.85972 -30.22878 -27.90274 -24.91946 -24.35353 -23.03555 -21.71739 -20.30819 -19.37590 -17.33526 -16.91484 -16.61084 -16.01775 -15.40411 -14.98345 -14.94279 -14.39662 -13.88352 -13.61267 -13.36708 -13.14620 -13.12152 -12.81990 -12.56885 -12.25831 -12.11872 -12.03446 -11.89422 -11.64419 -11.29660 -11.03195 -10.74992 -10.65105 -10.39736 -10.30402 -10.19880 -9.92204 -9.69840 -9.38931 -8.69183 -8.59354 -7.39366 -6.13353 -4.30086 3.25646 3.32074 3.36080 4.26177 4.39518 4.47867 4.80764 5.01524 5.04244 5.17494 5.27031 5.59173 5.66043 5.71343 5.75403 5.87872 5.88627 6.00101 6.03395 6.11486 6.22261 6.32584 6.33910 6.47016 6.62053 6.73115 6.81449 6.97775 7.13129 7.39768 7.62491 7.79053 7.89349 8.18257 8.75664 9.35664 10.81174 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.027843 B = 0.006996 C = 0.006482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.380627 B = 4001.539768 C = 4318.671142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.058 3.942 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.516 4.516 8 H 0.078 0.922 9 C 0.190 3.810 10 H 0.075 0.925 11 N -0.516 5.516 12 C 0.048 3.952 13 C -0.116 4.116 14 C -0.114 4.114 15 C -0.081 4.081 16 H 0.084 0.916 17 C 0.067 3.933 18 N -0.850 5.850 19 C 0.037 3.963 20 C 0.400 3.600 21 F -0.201 7.201 22 F -0.229 7.229 23 F -0.144 7.144 24 H 0.265 0.735 25 H 0.087 0.913 26 H 0.035 0.965 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.024 0.976 32 H 0.071 0.929 33 H 0.338 0.662 34 H 0.336 0.664 35 H 0.051 0.949 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.094 -10.705 1.373 11.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.148 4.148 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.096 0.904 9 C 0.080 3.920 10 H 0.092 0.908 11 N -0.238 5.238 12 C -0.080 4.080 13 C -0.154 4.154 14 C -0.152 4.152 15 C -0.100 4.100 16 H 0.102 0.898 17 C -0.064 4.064 18 N -0.380 5.380 19 C -0.091 4.091 20 C 0.343 3.657 21 F -0.183 7.183 22 F -0.211 7.211 23 F -0.125 7.125 24 H 0.075 0.925 25 H 0.106 0.894 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.069 0.931 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.483 -10.013 0.424 10.610 hybrid contribution -0.950 0.211 1.757 2.009 sum 2.533 -9.802 2.182 10.356 Atomic orbital electron populations 1.70337 1.05762 1.27036 1.45948 1.25152 0.95128 1.00050 0.94471 0.86299 0.79694 0.82082 0.78277 1.20305 1.21133 1.19584 1.20783 0.93974 0.87538 1.53009 0.90375 1.20624 0.89696 0.91743 0.89932 0.90769 1.62047 1.28434 1.02683 1.30662 1.22380 0.95848 0.99594 0.90133 1.21605 0.98382 0.94493 1.00880 1.21617 0.98978 0.97627 0.96937 1.21174 0.97741 0.93044 0.98068 0.89757 1.21803 0.93198 0.91838 0.99604 1.58753 1.22596 1.10475 1.46191 1.22466 0.95458 0.89908 1.01314 1.24035 0.81456 0.71610 0.88620 1.92975 1.75026 1.94388 1.55914 1.92924 1.86877 1.44226 1.97076 1.93351 1.62136 1.61004 1.96012 0.92480 0.89438 0.94670 0.92353 0.91355 0.92979 0.92465 0.95804 0.91012 0.84865 0.85203 0.93075 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.68 9.61 55.43 0.53 -23.15 16 2 C 0.06 1.55 5.27 -17.82 -0.09 1.46 16 3 Si 0.91 20.80 29.54 -169.99 -5.02 15.77 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.52 -13.56 7.51 -34.44 -0.26 -13.81 16 8 H 0.08 2.05 7.41 -52.49 -0.39 1.66 16 9 C 0.19 4.64 2.13 -68.86 -0.15 4.49 16 10 H 0.07 1.93 7.90 -51.93 -0.41 1.52 16 11 N -0.52 -10.81 4.56 -228.07 -1.04 -11.85 16 12 C 0.05 0.94 3.90 -3.83 -0.01 0.93 16 13 C -0.12 -1.81 6.09 -26.65 -0.16 -1.97 16 14 C -0.11 -1.59 5.00 -26.61 -0.13 -1.72 16 15 C -0.08 -1.21 2.56 -90.54 -0.23 -1.44 16 16 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 17 C 0.07 0.84 6.25 -3.82 -0.02 0.82 16 18 N -0.85 -9.25 9.62 -10.37 -0.10 -9.35 16 19 C 0.04 0.67 4.27 -3.83 -0.02 0.66 16 20 C 0.40 9.86 2.32 37.16 0.09 9.95 16 21 F -0.20 -4.96 13.56 2.25 0.03 -4.93 16 22 F -0.23 -5.20 13.81 2.25 0.03 -5.17 16 23 F -0.14 -3.91 13.28 2.25 0.03 -3.88 16 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.09 1.87 6.81 -51.93 -0.35 1.51 16 26 H 0.04 0.73 5.76 -51.93 -0.30 0.43 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.69 6.80 -51.93 -0.35 0.33 16 31 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.34 3.36 7.31 -39.29 -0.29 3.07 16 34 H 0.34 2.96 9.08 -39.30 -0.36 2.60 16 35 H 0.05 0.97 5.42 -51.93 -0.28 0.69 16 36 H 0.07 1.25 7.97 -51.93 -0.41 0.83 16 LS Contribution 282.23 15.07 4.25 4.25 Total: -1.00 -27.57 282.23 -7.09 -34.66 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.82 Total: 4.28 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -1.00 Total: -0.65 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: -0.61 Total: -44.35 kcal Atomic # 9 Polarization: -14.06 SS G_CDS: 0.09 Total: -13.97 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.57 -7.09 -34.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261167937.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.531 kcal (2) G-P(sol) polarization free energy of solvation -27.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds