Wall clock time and date at job start Mon Mar 30 2020 04:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00253 * 2 1 4 4 H 1.48499 * 109.47082 * 270.00121 * 3 2 1 5 5 H 1.48497 * 109.46699 * 30.00013 * 3 2 1 6 6 H 1.48497 * 109.47192 * 149.99814 * 3 2 1 7 7 C 1.37880 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00114 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99972 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.46784 * 59.99901 * 9 7 2 11 11 N 1.46896 * 109.46809 * 180.02562 * 9 7 2 12 12 C 1.46846 * 111.00413 * 70.02917 * 11 9 7 13 13 C 1.53037 * 109.52319 * 185.83635 * 12 11 9 14 14 C 1.53120 * 109.27967 * 300.81778 * 13 12 11 15 15 C 1.53120 * 109.15763 * 57.66023 * 14 13 12 16 16 H 1.09004 * 109.50653 * 62.28238 * 15 14 13 17 17 C 1.52995 * 109.53570 * 182.38275 * 15 14 13 18 18 N 1.46904 * 109.47207 * 294.82080 * 17 15 14 19 19 C 1.46854 * 110.99730 * 194.23941 * 11 9 7 20 20 C 1.53002 * 109.47027 * 299.99987 * 9 7 2 21 21 F 1.39895 * 109.47246 * 306.70571 * 20 9 7 22 22 F 1.39907 * 109.46667 * 186.70889 * 20 9 7 23 23 F 1.39895 * 109.46967 * 66.71287 * 20 9 7 24 24 H 0.96997 * 119.99711 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46191 * 305.85657 * 12 11 9 26 26 H 1.09000 * 109.46008 * 65.82320 * 12 11 9 27 27 H 1.09001 * 109.50109 * 180.87983 * 13 12 11 28 28 H 1.08996 * 109.53285 * 60.78464 * 13 12 11 29 29 H 1.08993 * 109.52830 * 297.75124 * 14 13 12 30 30 H 1.08999 * 109.57213 * 177.59170 * 14 13 12 31 31 H 1.09003 * 109.47015 * 54.82022 * 17 15 14 32 32 H 1.09006 * 109.47400 * 174.81898 * 17 15 14 33 33 H 1.00904 * 110.99888 * 56.04312 * 18 17 15 34 34 H 1.00892 * 110.99914 * 179.97438 * 18 17 15 35 35 H 1.08994 * 109.46057 * 294.17858 * 19 11 9 36 36 H 1.09002 * 109.46263 * 54.15720 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 2.2055 -3.6157 -0.0005 12 6 2.9035 -3.7115 1.2879 13 6 3.9883 -4.7876 1.2032 14 6 3.3421 -6.1303 0.8505 15 6 2.5816 -5.9902 -0.4710 16 1 3.2808 -5.7387 -1.2685 17 6 1.8831 -7.3106 -0.8018 18 7 2.8917 -8.3501 -1.0473 19 6 1.5374 -4.8793 -0.3378 20 6 0.3718 -2.5805 1.2491 21 9 1.1551 -2.3540 2.3858 22 9 -0.2092 -3.8507 1.3286 23 9 -0.6343 -1.6113 1.1752 24 1 -0.4849 0.8400 0.0004 25 1 3.3619 -2.7514 1.5249 26 1 2.1901 -3.9757 2.0686 27 1 4.4957 -4.8693 2.1644 28 1 4.7101 -4.5175 0.4325 29 1 2.6494 -6.4199 1.6406 30 1 4.1153 -6.8916 0.7469 31 1 1.2518 -7.6075 0.0358 32 1 1.2683 -7.1832 -1.6928 33 1 3.5153 -8.4421 -0.2593 34 1 2.4552 -9.2326 -1.2676 35 1 0.8305 -5.1379 0.4505 36 1 1.0040 -4.7674 -1.2817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261167937.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:33 Heat of formation + Delta-G solvation = -155.308056 kcal Electronic energy + Delta-G solvation = -22534.202735 eV Core-core repulsion = 18830.793220 eV Total energy + Delta-G solvation = -3703.409515 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.62960 -48.20961 -47.80041 -40.11055 -36.78399 -34.97751 -33.44502 -31.51705 -29.66890 -26.64333 -25.88136 -24.56409 -23.25519 -21.91775 -20.73148 -19.30694 -18.87931 -18.54633 -17.45324 -16.96882 -16.61343 -16.23822 -16.02471 -15.46043 -15.08175 -14.94492 -14.77837 -14.72089 -14.58718 -14.29266 -14.15495 -13.96743 -13.75081 -13.55025 -13.10491 -12.88920 -12.69163 -12.49470 -12.44922 -12.07260 -11.81657 -11.65094 -11.50382 -11.08556 -11.05305 -10.62138 -9.56126 -9.10011 -8.16491 -6.39631 1.44312 1.45034 1.56120 2.37300 2.41539 2.95779 3.01876 3.71199 3.72624 3.79333 3.85181 3.95710 4.08822 4.10880 4.35383 4.52489 4.55086 4.60287 4.72961 4.78084 4.82583 4.90447 5.04761 5.12731 5.19292 5.27741 5.38395 5.53621 5.64466 5.81310 6.16936 6.26990 6.44728 6.67111 6.69262 7.29643 8.77712 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.027843 B = 0.006996 C = 0.006482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.380627 B = 4001.539768 C = 4318.671142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.013 3.987 3 Si 0.970 3.030 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.074 0.926 9 C 0.193 3.807 10 H 0.052 0.948 11 N -0.520 5.520 12 C 0.050 3.950 13 C -0.109 4.109 14 C -0.108 4.108 15 C -0.073 4.073 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.852 5.852 19 C 0.036 3.964 20 C 0.401 3.599 21 F -0.202 7.202 22 F -0.218 7.218 23 F -0.160 7.160 24 H 0.265 0.735 25 H 0.064 0.936 26 H 0.023 0.977 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.029 0.971 32 H 0.069 0.931 33 H 0.346 0.654 34 H 0.350 0.650 35 H 0.043 0.957 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.429 -11.940 1.539 12.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.190 4.190 3 Si 0.795 3.205 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.092 0.908 9 C 0.082 3.918 10 H 0.069 0.931 11 N -0.242 5.242 12 C -0.078 4.078 13 C -0.147 4.147 14 C -0.146 4.146 15 C -0.092 4.092 16 H 0.092 0.908 17 C -0.057 4.057 18 N -0.384 5.384 19 C -0.092 4.092 20 C 0.344 3.656 21 F -0.183 7.183 22 F -0.200 7.200 23 F -0.142 7.142 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.160 0.840 34 H 0.164 0.836 35 H 0.061 0.939 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.829 -11.282 0.589 12.286 hybrid contribution -1.379 0.537 1.704 2.257 sum 3.450 -10.745 2.292 11.516 Atomic orbital electron populations 1.70455 1.07001 1.27699 1.46769 1.25919 0.95890 1.03178 0.94048 0.85356 0.78510 0.78125 0.78544 1.19487 1.20999 1.19087 1.20988 0.93888 0.88619 1.53047 0.90832 1.20424 0.89798 0.92826 0.88764 0.93070 1.62069 1.27670 1.03010 1.31465 1.22358 0.96462 1.00016 0.88968 1.21580 0.97011 0.93907 1.02226 1.21601 0.99573 0.97317 0.96107 1.21081 0.96660 0.92967 0.98495 0.90849 1.21634 0.93326 0.91093 0.99677 1.58684 1.22299 1.10858 1.46572 1.22532 0.96390 0.89699 1.00557 1.24009 0.81147 0.71672 0.88769 1.92971 1.74994 1.94466 1.55898 1.92941 1.86727 1.43242 1.97055 1.93314 1.62827 1.61899 1.96112 0.92523 0.91738 0.95874 0.90086 0.91449 0.92783 0.89484 0.95318 0.91296 0.83996 0.83621 0.93862 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.64 9.61 21.45 0.21 -49.43 16 2 C 0.01 0.71 5.27 84.66 0.45 1.15 16 3 Si 0.97 42.68 29.54 68.60 2.03 44.71 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.53 -28.16 7.51 25.60 0.19 -27.97 16 8 H 0.07 3.91 7.41 -2.91 -0.02 3.88 16 9 C 0.19 9.60 2.13 44.17 0.09 9.70 16 10 H 0.05 2.77 7.90 -2.39 -0.02 2.75 16 11 N -0.52 -21.88 4.56 -875.49 -3.99 -25.87 16 12 C 0.05 1.92 3.90 86.33 0.34 2.26 16 13 C -0.11 -3.19 6.09 30.65 0.19 -3.00 16 14 C -0.11 -2.71 5.00 30.67 0.15 -2.56 16 15 C -0.07 -2.04 2.56 -10.74 -0.03 -2.07 16 16 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 17 C 0.07 1.70 6.25 86.30 0.54 2.24 16 18 N -0.85 -15.92 9.62 -186.71 -1.80 -17.72 16 19 C 0.04 1.31 4.27 86.33 0.37 1.68 16 20 C 0.40 20.10 2.32 71.98 0.17 20.27 16 21 F -0.20 -10.03 13.56 44.97 0.61 -9.42 16 22 F -0.22 -9.93 13.81 44.97 0.62 -9.31 16 23 F -0.16 -8.89 13.28 44.97 0.60 -8.29 16 24 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 25 H 0.06 2.77 6.81 -2.39 -0.02 2.75 16 26 H 0.02 0.95 5.76 -2.39 -0.01 0.93 16 27 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.09 1.72 6.80 -2.39 -0.02 1.70 16 31 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.35 5.60 7.31 -89.69 -0.66 4.94 16 34 H 0.35 5.09 9.08 -89.70 -0.81 4.27 16 35 H 0.04 1.62 5.42 -2.39 -0.01 1.61 16 36 H 0.06 2.30 7.97 -2.39 -0.02 2.28 16 Total: -1.00 -58.82 282.23 0.37 -58.45 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -0.36 Total: 15.20 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 2.46 Total: 1.69 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -5.58 Total: -93.02 kcal Atomic # 9 Polarization: -28.85 SS G_CDS: 1.83 Total: -27.02 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -58.82 0.37 -58.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261167937.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.859 kcal (2) G-P(sol) polarization free energy of solvation -58.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds