Wall clock time and date at job start Mon Mar 30 2020 04:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00355 * 2 1 4 4 H 1.48497 * 109.47357 * 180.27806 * 3 2 1 5 5 H 1.48500 * 109.47047 * 300.27503 * 3 2 1 6 6 H 1.48496 * 109.47077 * 60.27200 * 3 2 1 7 7 C 1.37884 * 119.99541 * 180.27395 * 2 1 3 8 8 H 1.07997 * 119.99606 * 179.72357 * 7 2 1 9 9 C 1.50701 * 120.00419 * 359.72511 * 7 2 1 10 10 H 1.09007 * 109.46712 * 300.00251 * 9 7 2 11 11 N 1.46894 * 109.47063 * 179.97438 * 9 7 2 12 12 C 1.46846 * 111.00431 * 311.06715 * 11 9 7 13 13 C 1.53030 * 109.52634 * 185.84081 * 12 11 9 14 14 C 1.53120 * 109.28076 * 300.82319 * 13 12 11 15 15 C 1.53117 * 109.15981 * 57.65024 * 14 13 12 16 16 H 1.09005 * 109.50370 * 62.29181 * 15 14 13 17 17 C 1.53004 * 109.50330 * 182.36801 * 15 14 13 18 18 N 1.46902 * 109.47185 * 295.00251 * 17 15 14 19 19 C 1.46847 * 111.00187 * 75.28110 * 11 9 7 20 20 C 1.53000 * 109.46951 * 59.99461 * 9 7 2 21 21 F 1.39908 * 109.46779 * 53.15523 * 20 9 7 22 22 F 1.39894 * 109.47009 * 173.14771 * 20 9 7 23 23 F 1.39894 * 109.47703 * 293.15186 * 20 9 7 24 24 H 0.96998 * 120.00181 * 359.72349 * 1 2 3 25 25 H 1.08997 * 109.46199 * 305.86062 * 12 11 9 26 26 H 1.08998 * 109.45636 * 65.83274 * 12 11 9 27 27 H 1.09003 * 109.50457 * 60.76039 * 13 12 11 28 28 H 1.08999 * 109.50581 * 180.88270 * 13 12 11 29 29 H 1.09000 * 109.52574 * 177.55945 * 14 13 12 30 30 H 1.09002 * 109.52114 * 297.68833 * 14 13 12 31 31 H 1.09001 * 109.46947 * 55.00253 * 17 15 14 32 32 H 1.09005 * 109.47085 * 175.00445 * 17 15 14 33 33 H 1.00900 * 111.00028 * 56.04673 * 18 17 15 34 34 H 1.00893 * 111.00064 * 179.97438 * 18 17 15 35 35 H 1.09001 * 109.46074 * 294.17369 * 19 11 9 36 36 H 1.09003 * 109.46466 * 54.14047 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8955 2.3935 1.2158 7 6 2.0044 -1.1942 -0.0057 8 1 3.0844 -1.1941 -0.0102 9 6 1.2509 -2.4993 -0.0057 10 1 0.6279 -2.5590 0.8868 11 7 2.2055 -3.6158 -0.0129 12 6 3.2273 -3.4279 -1.0507 13 6 4.1141 -4.6727 -1.1266 14 6 4.7779 -4.9044 0.2336 15 6 3.6928 -5.0487 1.3043 16 1 3.0767 -5.9202 1.0829 17 6 4.3484 -5.2216 2.6759 18 7 5.0943 -6.4868 2.7061 19 6 2.8182 -3.7929 1.3098 20 6 0.3660 -2.5772 -1.2514 21 9 1.1436 -2.3445 -2.3910 22 9 -0.2127 -3.8482 -1.3334 23 9 -0.6417 -1.6104 -1.1690 24 1 -0.4850 0.8400 0.0041 25 1 2.7421 -3.2683 -2.0135 26 1 3.8396 -2.5604 -0.8044 27 1 3.5047 -5.5384 -1.3862 28 1 4.8821 -4.5267 -1.8861 29 1 5.3764 -5.8146 0.1966 30 1 5.4188 -4.0565 0.4753 31 1 5.0317 -4.3924 2.8591 32 1 3.5785 -5.2352 3.4474 33 1 5.7712 -6.5254 1.9589 34 1 5.5372 -6.6241 3.6022 35 1 3.4324 -2.9236 1.5448 36 1 2.0358 -3.8985 2.0613 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261167940.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:36 Heat of formation + Delta-G solvation = -142.488772 kcal Electronic energy + Delta-G solvation = -22328.168803 eV Core-core repulsion = 18625.315173 eV Total energy + Delta-G solvation = -3702.853629 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.35543 -46.00026 -45.60626 -38.73660 -35.42332 -33.30016 -31.79736 -30.18300 -27.83093 -24.88364 -24.55090 -22.90348 -21.61602 -20.23295 -19.20051 -17.25651 -16.80288 -16.55922 -15.98480 -15.25592 -14.91586 -14.82356 -14.45832 -13.83421 -13.58621 -13.31453 -12.99995 -12.96371 -12.69001 -12.40499 -12.30488 -12.15044 -12.08067 -11.90222 -11.55684 -11.15899 -11.05889 -10.88619 -10.64938 -10.45342 -10.34604 -10.03625 -9.84319 -9.73566 -9.38825 -8.67508 -8.65093 -7.36646 -6.16026 -4.40834 3.17163 3.26072 3.28726 4.23130 4.37178 4.63255 4.86531 4.99181 5.07306 5.21082 5.32350 5.62329 5.69984 5.82980 5.90996 5.92535 5.96946 6.06734 6.10997 6.25996 6.28529 6.36999 6.41197 6.58425 6.71107 6.78499 6.87293 7.04014 7.15283 7.41472 7.64248 7.68836 7.89887 8.03180 8.63166 9.28373 10.73865 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.020370 B = 0.007795 C = 0.006626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.222055 B = 3591.207921 C = 4224.587862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.068 3.932 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.561 4.561 8 H 0.074 0.926 9 C 0.180 3.820 10 H 0.073 0.927 11 N -0.531 5.531 12 C 0.042 3.958 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.084 4.084 16 H 0.083 0.917 17 C 0.067 3.933 18 N -0.851 5.851 19 C 0.074 3.926 20 C 0.442 3.558 21 F -0.202 7.202 22 F -0.219 7.219 23 F -0.145 7.145 24 H 0.265 0.735 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.024 0.976 32 H 0.071 0.929 33 H 0.338 0.662 34 H 0.336 0.664 35 H 0.038 0.962 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.245 -6.983 2.036 10.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.599 4.599 8 H 0.092 0.908 9 C 0.071 3.929 10 H 0.090 0.910 11 N -0.254 5.254 12 C -0.086 4.086 13 C -0.153 4.153 14 C -0.151 4.151 15 C -0.103 4.103 16 H 0.101 0.899 17 C -0.064 4.064 18 N -0.381 5.381 19 C -0.054 4.054 20 C 0.387 3.613 21 F -0.184 7.184 22 F -0.201 7.201 23 F -0.126 7.126 24 H 0.076 0.924 25 H 0.105 0.895 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.056 0.944 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.059 -7.621 1.775 9.897 hybrid contribution 1.513 2.345 0.101 2.792 sum 7.572 -5.276 1.876 9.418 Atomic orbital electron populations 1.70348 1.05697 1.26981 1.45060 1.25115 0.95024 0.99877 0.94006 0.86390 0.80022 0.82985 0.77837 1.19669 1.20628 1.20715 1.21389 0.93905 0.89696 1.54915 0.90814 1.20282 0.91330 0.89717 0.91561 0.90978 1.62068 1.16629 1.42364 1.04347 1.22358 0.93618 0.95512 0.97123 1.21603 0.98299 0.99394 0.96053 1.21604 0.97402 1.00303 0.95745 1.21219 0.96504 0.99450 0.93107 0.89883 1.21801 0.97060 0.89370 0.98199 1.58758 1.34107 1.36862 1.08334 1.21820 0.96753 0.95495 0.91376 1.22180 0.80720 0.71881 0.86510 1.92890 1.75241 1.94435 1.55827 1.93023 1.86397 1.43660 1.96971 1.93341 1.61897 1.61472 1.95933 0.92404 0.89458 0.93872 0.91725 0.92465 0.92648 0.92862 0.95733 0.91022 0.84877 0.85226 0.94368 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.18 9.60 55.43 0.53 -22.65 16 2 C 0.07 1.78 5.28 -17.82 -0.09 1.68 16 3 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.56 -14.37 6.92 -34.44 -0.24 -14.61 16 8 H 0.07 1.88 5.84 -52.49 -0.31 1.58 16 9 C 0.18 4.37 1.98 -68.87 -0.14 4.24 16 10 H 0.07 1.86 7.89 -51.92 -0.41 1.45 16 11 N -0.53 -11.06 4.37 -228.09 -1.00 -12.06 16 12 C 0.04 0.82 4.61 -3.84 -0.02 0.80 16 13 C -0.12 -1.82 6.09 -26.65 -0.16 -1.98 16 14 C -0.11 -1.58 5.00 -26.61 -0.13 -1.71 16 15 C -0.08 -1.25 2.56 -90.54 -0.23 -1.48 16 16 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 17 C 0.07 0.84 6.25 -3.82 -0.02 0.82 16 18 N -0.85 -9.30 9.62 -10.36 -0.10 -9.40 16 19 C 0.07 1.35 4.52 -3.84 -0.02 1.33 16 20 C 0.44 11.10 2.72 37.16 0.10 11.20 16 21 F -0.20 -5.02 13.94 2.25 0.03 -4.99 16 22 F -0.22 -5.24 17.11 2.25 0.04 -5.20 16 23 F -0.15 -3.94 13.27 2.25 0.03 -3.91 16 24 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.09 1.86 5.22 -51.93 -0.27 1.59 16 26 H 0.04 0.90 6.15 -51.93 -0.32 0.58 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.67 6.80 -51.93 -0.35 0.32 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.34 3.39 7.30 -39.29 -0.29 3.10 16 34 H 0.34 2.98 9.08 -39.30 -0.36 2.63 16 35 H 0.04 0.74 7.68 -51.93 -0.40 0.34 16 36 H 0.07 1.21 7.96 -51.93 -0.41 0.80 16 LS Contribution 285.78 15.07 4.31 4.31 Total: -1.00 -27.31 285.78 -6.92 -34.23 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -4.79 Total: 3.91 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -0.95 Total: 0.28 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: -0.56 Total: -44.10 kcal Atomic # 9 Polarization: -14.21 SS G_CDS: 0.10 Total: -14.11 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.31 -6.92 -34.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261167940.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.257 kcal (2) G-P(sol) polarization free energy of solvation -27.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds