Wall clock time and date at job start Mon Mar 30 2020 04:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00355 * 2 1 4 4 H 1.48497 * 109.47357 * 180.27806 * 3 2 1 5 5 H 1.48500 * 109.47047 * 300.27503 * 3 2 1 6 6 H 1.48496 * 109.47077 * 60.27200 * 3 2 1 7 7 C 1.37884 * 119.99541 * 180.27395 * 2 1 3 8 8 H 1.07997 * 119.99606 * 179.72357 * 7 2 1 9 9 C 1.50701 * 120.00419 * 359.72511 * 7 2 1 10 10 H 1.09007 * 109.46712 * 300.00251 * 9 7 2 11 11 N 1.46894 * 109.47063 * 179.97438 * 9 7 2 12 12 C 1.46846 * 111.00431 * 311.06715 * 11 9 7 13 13 C 1.53030 * 109.52634 * 185.84081 * 12 11 9 14 14 C 1.53120 * 109.28076 * 300.82319 * 13 12 11 15 15 C 1.53117 * 109.15981 * 57.65024 * 14 13 12 16 16 H 1.09005 * 109.50370 * 62.29181 * 15 14 13 17 17 C 1.53004 * 109.50330 * 182.36801 * 15 14 13 18 18 N 1.46902 * 109.47185 * 295.00251 * 17 15 14 19 19 C 1.46847 * 111.00187 * 75.28110 * 11 9 7 20 20 C 1.53000 * 109.46951 * 59.99461 * 9 7 2 21 21 F 1.39908 * 109.46779 * 53.15523 * 20 9 7 22 22 F 1.39894 * 109.47009 * 173.14771 * 20 9 7 23 23 F 1.39894 * 109.47703 * 293.15186 * 20 9 7 24 24 H 0.96998 * 120.00181 * 359.72349 * 1 2 3 25 25 H 1.08997 * 109.46199 * 305.86062 * 12 11 9 26 26 H 1.08998 * 109.45636 * 65.83274 * 12 11 9 27 27 H 1.09003 * 109.50457 * 60.76039 * 13 12 11 28 28 H 1.08999 * 109.50581 * 180.88270 * 13 12 11 29 29 H 1.09000 * 109.52574 * 177.55945 * 14 13 12 30 30 H 1.09002 * 109.52114 * 297.68833 * 14 13 12 31 31 H 1.09001 * 109.46947 * 55.00253 * 17 15 14 32 32 H 1.09005 * 109.47085 * 175.00445 * 17 15 14 33 33 H 1.00900 * 111.00028 * 56.04673 * 18 17 15 34 34 H 1.00893 * 111.00064 * 179.97438 * 18 17 15 35 35 H 1.09001 * 109.46074 * 294.17369 * 19 11 9 36 36 H 1.09003 * 109.46466 * 54.14047 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8955 2.3935 1.2158 7 6 2.0044 -1.1942 -0.0057 8 1 3.0844 -1.1941 -0.0102 9 6 1.2509 -2.4993 -0.0057 10 1 0.6279 -2.5590 0.8868 11 7 2.2055 -3.6158 -0.0129 12 6 3.2273 -3.4279 -1.0507 13 6 4.1141 -4.6727 -1.1266 14 6 4.7779 -4.9044 0.2336 15 6 3.6928 -5.0487 1.3043 16 1 3.0767 -5.9202 1.0829 17 6 4.3484 -5.2216 2.6759 18 7 5.0943 -6.4868 2.7061 19 6 2.8182 -3.7929 1.3098 20 6 0.3660 -2.5772 -1.2514 21 9 1.1436 -2.3445 -2.3910 22 9 -0.2127 -3.8482 -1.3334 23 9 -0.6417 -1.6104 -1.1690 24 1 -0.4850 0.8400 0.0041 25 1 2.7421 -3.2683 -2.0135 26 1 3.8396 -2.5604 -0.8044 27 1 3.5047 -5.5384 -1.3862 28 1 4.8821 -4.5267 -1.8861 29 1 5.3764 -5.8146 0.1966 30 1 5.4188 -4.0565 0.4753 31 1 5.0317 -4.3924 2.8591 32 1 3.5785 -5.2352 3.4474 33 1 5.7712 -6.5254 1.9589 34 1 5.5372 -6.6241 3.6022 35 1 3.4324 -2.9236 1.5448 36 1 2.0358 -3.8985 2.0613 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261167940.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:36 Heat of formation + Delta-G solvation = -161.031278 kcal Electronic energy + Delta-G solvation = -22328.972866 eV Core-core repulsion = 18625.315173 eV Total energy + Delta-G solvation = -3703.657693 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.38684 -48.01028 -47.68665 -40.17643 -36.80930 -34.92280 -33.38879 -31.46769 -29.58710 -26.76995 -25.89846 -24.44828 -23.14501 -21.84417 -20.58464 -19.22257 -18.78684 -18.53199 -17.38533 -16.82919 -16.61109 -16.14310 -15.97457 -15.29261 -15.17534 -14.88599 -14.77057 -14.47465 -14.39910 -14.36053 -14.13792 -14.04871 -13.84382 -13.49640 -13.07839 -12.91847 -12.68703 -12.45364 -12.24805 -12.15695 -11.91725 -11.70123 -11.47657 -11.05156 -10.94667 -10.66657 -9.54553 -9.10082 -8.15150 -6.46998 1.36473 1.39805 1.49892 2.32717 2.51497 2.96369 3.03520 3.76910 3.84027 3.90083 3.92977 4.00355 4.12461 4.28767 4.43289 4.57246 4.59214 4.69919 4.76954 4.83634 4.90070 4.97058 5.08476 5.15105 5.23356 5.33045 5.41499 5.54971 5.63113 5.79637 6.09181 6.28769 6.40653 6.63720 6.68401 7.25099 8.73295 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.020370 B = 0.007795 C = 0.006626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.222055 B = 3591.207921 C = 4224.587862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.022 3.978 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.565 4.565 8 H 0.072 0.928 9 C 0.184 3.816 10 H 0.050 0.950 11 N -0.533 5.533 12 C 0.043 3.957 13 C -0.109 4.109 14 C -0.107 4.107 15 C -0.074 4.074 16 H 0.073 0.927 17 C 0.075 3.925 18 N -0.853 5.853 19 C 0.075 3.925 20 C 0.440 3.560 21 F -0.202 7.202 22 F -0.213 7.213 23 F -0.159 7.159 24 H 0.266 0.734 25 H 0.067 0.933 26 H 0.028 0.972 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.029 0.971 32 H 0.069 0.931 33 H 0.346 0.654 34 H 0.350 0.650 35 H 0.026 0.974 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.208 -7.691 2.356 12.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.183 4.183 3 Si 0.786 3.214 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.603 4.603 8 H 0.090 0.910 9 C 0.074 3.926 10 H 0.068 0.932 11 N -0.257 5.257 12 C -0.085 4.085 13 C -0.147 4.147 14 C -0.145 4.145 15 C -0.093 4.093 16 H 0.091 0.909 17 C -0.057 4.057 18 N -0.385 5.385 19 C -0.054 4.054 20 C 0.385 3.615 21 F -0.183 7.183 22 F -0.195 7.195 23 F -0.140 7.140 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.044 0.956 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.044 -8.350 2.106 11.784 hybrid contribution 0.879 2.511 -0.010 2.661 sum 8.922 -5.839 2.096 10.867 Atomic orbital electron populations 1.70459 1.06931 1.27663 1.46020 1.25854 0.95760 1.02955 0.93758 0.85456 0.79024 0.79193 0.77760 1.19048 1.20790 1.20059 1.21554 0.93885 0.90379 1.54443 0.90961 1.20086 0.91690 0.90743 0.90098 0.93207 1.62107 1.17036 1.40471 1.06056 1.22345 0.93359 0.97194 0.95596 1.21571 0.98123 0.97028 0.97979 1.21582 0.97072 1.01782 0.94027 1.21111 0.96234 0.96857 0.95142 0.90896 1.21630 0.97201 0.90445 0.96413 1.58690 1.34608 1.35560 1.09594 1.21893 0.96832 0.96856 0.89787 1.22282 0.80574 0.71769 0.86907 1.92891 1.75176 1.94469 1.55793 1.93022 1.86340 1.43161 1.96976 1.93310 1.62544 1.62158 1.96031 0.92415 0.91449 0.95383 0.91836 0.90267 0.89736 0.92692 0.95300 0.91290 0.84035 0.83652 0.95573 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.58 9.60 21.45 0.21 -48.37 16 2 C 0.02 1.14 5.28 84.66 0.45 1.59 16 3 Si 0.96 41.96 29.54 68.60 2.03 43.98 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.56 -29.18 6.92 25.60 0.18 -29.00 16 8 H 0.07 3.70 5.84 -2.91 -0.02 3.68 16 9 C 0.18 9.08 1.98 44.17 0.09 9.17 16 10 H 0.05 2.67 7.89 -2.38 -0.02 2.65 16 11 N -0.53 -22.27 4.37 -875.54 -3.83 -26.09 16 12 C 0.04 1.66 4.61 86.32 0.40 2.06 16 13 C -0.11 -3.20 6.09 30.64 0.19 -3.01 16 14 C -0.11 -2.69 5.00 30.67 0.15 -2.54 16 15 C -0.07 -2.08 2.56 -10.74 -0.03 -2.11 16 16 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 17 C 0.07 1.71 6.25 86.30 0.54 2.25 16 18 N -0.85 -16.02 9.62 -186.70 -1.80 -17.82 16 19 C 0.07 2.69 4.52 86.32 0.39 3.08 16 20 C 0.44 22.41 2.72 71.98 0.20 22.61 16 21 F -0.20 -10.11 13.94 44.97 0.63 -9.49 16 22 F -0.21 -10.30 17.11 44.97 0.77 -9.53 16 23 F -0.16 -8.82 13.27 44.97 0.60 -8.22 16 24 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 25 H 0.07 2.86 5.22 -2.39 -0.01 2.85 16 26 H 0.03 1.16 6.15 -2.39 -0.01 1.15 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.08 1.69 6.80 -2.39 -0.02 1.68 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 31 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 1.62 8.14 -2.38 -0.02 1.61 16 33 H 0.35 5.66 7.30 -89.69 -0.66 5.01 16 34 H 0.35 5.13 9.08 -89.70 -0.81 4.32 16 35 H 0.03 1.00 7.68 -2.39 -0.02 0.98 16 36 H 0.06 2.22 7.96 -2.39 -0.02 2.20 16 Total: -1.00 -57.93 285.78 0.80 -57.13 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -0.35 Total: 14.31 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 2.55 Total: 4.10 kcal Atomic # 7 Polarization: -86.86 SS G_CDS: -5.42 Total: -92.28 kcal Atomic # 9 Polarization: -29.23 SS G_CDS: 1.99 Total: -27.24 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Total: -57.93 0.80 -57.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261167940.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.899 kcal (2) G-P(sol) polarization free energy of solvation -57.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds