Wall clock time and date at job start Mon Mar 30 2020 05:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46757 * 2 1 4 4 C 1.50701 * 109.47046 * 119.99978 * 2 1 3 5 5 C 1.36203 * 120.04208 * 120.31252 * 4 2 1 6 6 C 1.41020 * 118.59028 * 180.21903 * 5 4 2 7 7 O 1.21983 * 120.71127 * 179.74805 * 6 5 4 8 8 N 1.35027 * 118.58095 * 359.47828 * 6 5 4 9 9 C 1.46507 * 120.03962 * 180.25035 * 8 6 5 10 10 C 1.52993 * 109.46910 * 89.99826 * 9 8 6 11 11 O 1.42910 * 109.47126 * 64.99940 * 10 9 8 12 12 C 1.42894 * 113.99801 * 179.97438 * 11 10 9 13 13 C 1.50709 * 109.46997 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99392 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00279 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99480 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 120.00019 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47330 * 59.99455 * 17 15 13 19 19 H 1.48499 * 109.47288 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47106 * 299.99321 * 17 15 13 21 21 C 1.34743 * 119.91759 * 0.27585 * 8 6 5 22 22 N 1.30639 * 121.49197 * 359.97345 * 21 8 6 23 23 H 1.09004 * 109.46805 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47315 * 299.99657 * 1 2 3 25 25 H 1.08996 * 109.46867 * 60.00231 * 1 2 3 26 26 H 1.08997 * 109.46857 * 240.00068 * 2 1 3 27 27 H 1.08997 * 109.47282 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47469 * 299.99950 * 3 2 1 29 29 H 1.09003 * 109.47134 * 59.99733 * 3 2 1 30 30 H 1.07997 * 120.70569 * 359.97438 * 5 4 2 31 31 H 1.08998 * 109.46682 * 209.99754 * 9 8 6 32 32 H 1.08994 * 109.47095 * 330.00057 * 9 8 6 33 33 H 1.08999 * 109.47095 * 184.99536 * 10 9 8 34 34 H 1.08991 * 109.47763 * 305.00228 * 10 9 8 35 35 H 1.09006 * 109.47718 * 299.99751 * 12 11 10 36 36 H 1.08998 * 109.47632 * 60.00527 * 12 11 10 37 37 H 0.97008 * 119.99360 * 180.02562 * 16 15 13 38 38 H 1.07998 * 119.25311 * 180.02562 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.8207 -1.8142 1.1065 6 6 3.2698 -2.4578 2.2782 7 8 3.9737 -3.4518 2.2122 8 7 2.9084 -1.9470 3.4747 9 6 3.3615 -2.5869 4.7124 10 6 4.6966 -1.9763 5.1429 11 8 4.5054 -0.6000 5.4769 12 6 5.6976 0.0676 5.8951 13 6 5.3808 1.5045 6.2211 14 1 4.3701 1.8711 6.1187 15 6 6.3813 2.3511 6.6490 16 7 7.6121 1.9046 6.7732 17 14 5.9883 4.1318 7.0537 18 1 4.9845 4.1812 8.1470 19 1 7.2273 4.8258 7.4882 20 1 5.4407 4.8042 5.8482 21 6 2.1303 -0.8483 3.5291 22 7 1.7103 -0.2551 2.4436 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9563 0.8900 30 1 3.0929 -2.1908 0.1316 31 1 2.6202 -2.4286 5.4956 32 1 3.4887 -3.6560 4.5431 33 1 5.0773 -2.5117 6.0127 34 1 5.4130 -2.0555 4.3253 35 1 6.0988 -0.4255 6.7806 36 1 6.4351 0.0308 5.0933 37 1 8.3160 2.5002 7.0746 38 1 1.8481 -0.4486 4.4919 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292632109.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:48 Heat of formation + Delta-G solvation = -58.140115 kcal Electronic energy + Delta-G solvation = -20211.943772 eV Core-core repulsion = 17054.604515 eV Total energy + Delta-G solvation = -3157.339257 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.67316 -37.94907 -37.14410 -36.06556 -33.83880 -32.73232 -30.69886 -29.66809 -27.19575 -27.07964 -24.73533 -24.31596 -22.54144 -22.14896 -20.57339 -18.08904 -17.33815 -16.61123 -16.52743 -15.80892 -15.65069 -14.90792 -14.77021 -14.45677 -14.21638 -13.89765 -13.70837 -13.40799 -13.28714 -12.61947 -12.50515 -12.28295 -12.05730 -11.66916 -11.51660 -11.34188 -11.04652 -10.99485 -10.92746 -10.84523 -10.25824 -9.99598 -9.89884 -9.77476 -9.23998 -8.98614 -8.33601 -8.30992 -6.18340 -4.21413 0.78651 2.01793 2.61833 3.27456 3.30890 3.33880 3.72472 4.07075 4.24566 4.44095 4.60542 4.77848 4.86276 5.01051 5.07165 5.18366 5.20685 5.25040 5.43668 5.56403 5.59311 5.70751 5.76611 5.80752 5.83645 5.88713 5.98593 6.05024 6.16769 6.27353 6.53379 6.75478 6.96259 7.30343 7.68168 7.94439 7.99289 8.02842 8.37980 8.89034 9.43732 10.92962 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.017157 B = 0.005263 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.575455 B = 5318.962340 C = 6456.381360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.047 4.047 3 C -0.142 4.142 4 C 0.191 3.809 5 C -0.305 4.305 6 C 0.519 3.481 7 O -0.549 6.549 8 N -0.512 5.512 9 C 0.094 3.906 10 C 0.045 3.955 11 O -0.399 6.399 12 C 0.199 3.801 13 C -0.518 4.518 14 H 0.066 0.934 15 C 0.058 3.942 16 N -0.897 5.897 17 Si 0.909 3.091 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.405 3.595 22 N -0.544 5.544 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.148 0.852 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.008 0.992 36 H 0.004 0.996 37 H 0.266 0.734 38 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.447 -5.460 -9.383 17.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.066 4.066 3 C -0.200 4.200 4 C 0.071 3.929 5 C -0.329 4.329 6 C 0.320 3.680 7 O -0.429 6.429 8 N -0.228 5.228 9 C -0.028 4.028 10 C -0.033 4.033 11 O -0.320 6.320 12 C 0.125 3.875 13 C -0.556 4.556 14 H 0.085 0.915 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.736 3.264 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.200 1.200 21 C 0.121 3.879 22 N -0.267 5.267 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.166 0.834 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.025 0.975 36 H 0.022 0.978 37 H 0.075 0.925 38 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -13.431 -5.304 -9.478 17.273 hybrid contribution 0.945 0.120 0.255 0.986 sum -12.486 -5.185 -9.223 16.366 Atomic orbital electron populations 1.21759 0.93385 1.01863 1.02681 1.20173 0.96813 0.96728 0.92907 1.21776 1.01286 0.94227 1.02681 1.21142 0.88687 0.90028 0.93089 1.22631 1.09022 1.02025 0.99267 1.17270 0.81960 0.85498 0.83276 1.90912 1.39165 1.26606 1.86221 1.46784 1.40887 1.24994 1.10141 1.22199 0.97965 0.98700 0.83927 1.22580 0.94898 0.86468 0.99385 1.87768 1.37261 1.19642 1.87294 1.20216 0.81632 0.92053 0.93610 1.20958 0.95826 0.93585 1.45248 0.91533 1.24950 0.94677 0.99429 0.95329 1.69956 1.00607 1.36392 1.46604 0.86382 0.77670 0.83403 0.78966 1.19920 1.21116 1.19954 1.25100 0.82463 0.80730 0.99596 1.68188 1.29461 1.31725 0.97277 0.92946 0.91253 0.92165 0.89684 0.92567 0.92181 0.91117 0.83409 0.87857 0.87308 0.92097 0.93523 0.97453 0.97772 0.92482 0.77658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.10 37.16 0.34 -0.93 16 2 C -0.05 -0.50 3.17 -91.77 -0.29 -0.79 16 3 C -0.14 -1.53 9.10 37.15 0.34 -1.19 16 4 C 0.19 2.60 5.43 -82.59 -0.45 2.15 16 5 C -0.30 -4.52 9.68 -39.26 -0.38 -4.90 16 6 C 0.52 8.83 7.45 -15.09 -0.11 8.72 16 7 O -0.55 -10.86 16.78 4.93 0.08 -10.77 16 8 N -0.51 -7.67 2.55 -121.11 -0.31 -7.98 16 9 C 0.09 1.27 5.81 -4.04 -0.02 1.24 16 10 C 0.05 0.78 6.28 37.15 0.23 1.02 16 11 O -0.40 -8.71 9.79 -35.23 -0.34 -9.06 16 12 C 0.20 5.25 5.69 36.01 0.20 5.45 16 13 C -0.52 -14.66 9.43 -34.44 -0.32 -14.99 16 14 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 17 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 C 0.40 5.59 10.96 -90.53 -0.99 4.60 16 22 N -0.54 -7.73 9.93 -10.70 -0.11 -7.83 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.84 8.05 -51.93 -0.42 0.43 16 30 H 0.15 1.96 7.95 -52.49 -0.42 1.54 16 31 H 0.10 1.07 8.02 -51.93 -0.42 0.66 16 32 H 0.11 1.37 7.46 -51.93 -0.39 0.98 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.00 0.13 8.14 -51.93 -0.42 -0.30 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.21 2.35 8.03 -52.49 -0.42 1.92 16 LS Contribution 327.45 15.07 4.93 4.93 Total: -1.00 -33.24 327.45 -7.40 -40.64 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -5.81 Total: -2.46 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -1.56 Total: 1.91 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.32 Total: -41.52 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.26 Total: -19.83 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.24 -7.40 -40.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292632109.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.499 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds