Wall clock time and date at job start Mon Mar 30 2020 05:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46757 * 2 1 4 4 C 1.50701 * 109.47046 * 119.99978 * 2 1 3 5 5 C 1.36203 * 120.04208 * 120.31252 * 4 2 1 6 6 C 1.41020 * 118.59028 * 180.21903 * 5 4 2 7 7 O 1.21983 * 120.71127 * 179.74805 * 6 5 4 8 8 N 1.35027 * 118.58095 * 359.47828 * 6 5 4 9 9 C 1.46507 * 120.03962 * 180.25035 * 8 6 5 10 10 C 1.52993 * 109.46910 * 89.99826 * 9 8 6 11 11 O 1.42910 * 109.47126 * 64.99940 * 10 9 8 12 12 C 1.42894 * 113.99801 * 179.97438 * 11 10 9 13 13 C 1.50709 * 109.46997 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99392 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00279 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99480 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 120.00019 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47330 * 59.99455 * 17 15 13 19 19 H 1.48499 * 109.47288 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47106 * 299.99321 * 17 15 13 21 21 C 1.34743 * 119.91759 * 0.27585 * 8 6 5 22 22 N 1.30639 * 121.49197 * 359.97345 * 21 8 6 23 23 H 1.09004 * 109.46805 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47315 * 299.99657 * 1 2 3 25 25 H 1.08996 * 109.46867 * 60.00231 * 1 2 3 26 26 H 1.08997 * 109.46857 * 240.00068 * 2 1 3 27 27 H 1.08997 * 109.47282 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47469 * 299.99950 * 3 2 1 29 29 H 1.09003 * 109.47134 * 59.99733 * 3 2 1 30 30 H 1.07997 * 120.70569 * 359.97438 * 5 4 2 31 31 H 1.08998 * 109.46682 * 209.99754 * 9 8 6 32 32 H 1.08994 * 109.47095 * 330.00057 * 9 8 6 33 33 H 1.08999 * 109.47095 * 184.99536 * 10 9 8 34 34 H 1.08991 * 109.47763 * 305.00228 * 10 9 8 35 35 H 1.09006 * 109.47718 * 299.99751 * 12 11 10 36 36 H 1.08998 * 109.47632 * 60.00527 * 12 11 10 37 37 H 0.97008 * 119.99360 * 180.02562 * 16 15 13 38 38 H 1.07998 * 119.25311 * 180.02562 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.8207 -1.8142 1.1065 6 6 3.2698 -2.4578 2.2782 7 8 3.9737 -3.4518 2.2122 8 7 2.9084 -1.9470 3.4747 9 6 3.3615 -2.5869 4.7124 10 6 4.6966 -1.9763 5.1429 11 8 4.5054 -0.6000 5.4769 12 6 5.6976 0.0676 5.8951 13 6 5.3808 1.5045 6.2211 14 1 4.3701 1.8711 6.1187 15 6 6.3813 2.3511 6.6490 16 7 7.6121 1.9046 6.7732 17 14 5.9883 4.1318 7.0537 18 1 4.9845 4.1812 8.1470 19 1 7.2273 4.8258 7.4882 20 1 5.4407 4.8042 5.8482 21 6 2.1303 -0.8483 3.5291 22 7 1.7103 -0.2551 2.4436 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9563 0.8900 30 1 3.0929 -2.1908 0.1316 31 1 2.6202 -2.4286 5.4956 32 1 3.4887 -3.6560 4.5431 33 1 5.0773 -2.5117 6.0127 34 1 5.4130 -2.0555 4.3253 35 1 6.0988 -0.4255 6.7806 36 1 6.4351 0.0308 5.0933 37 1 8.3160 2.5002 7.0746 38 1 1.8481 -0.4486 4.4919 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292632109.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:48 Heat of formation + Delta-G solvation = -78.526433 kcal Electronic energy + Delta-G solvation = -20212.827789 eV Core-core repulsion = 17054.604515 eV Total energy + Delta-G solvation = -3158.223274 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.85969 -39.17540 -38.74361 -37.31240 -35.15748 -34.61121 -31.87343 -31.08917 -29.04911 -27.97759 -25.94068 -25.48274 -24.55920 -23.46994 -21.57539 -19.26352 -18.77694 -18.46912 -17.61830 -17.41880 -17.17294 -16.44398 -16.26256 -15.92712 -15.42897 -15.18630 -14.84987 -14.51091 -14.44186 -14.11752 -13.89848 -13.58507 -13.27512 -12.98482 -12.82863 -12.74353 -12.59194 -12.56588 -12.18483 -12.03748 -11.83939 -11.34624 -11.26983 -11.11365 -10.97751 -10.85665 -10.34396 -9.54976 -8.33306 -6.46086 -0.33990 0.79690 1.41203 1.45375 1.45887 1.53619 2.32560 2.54481 3.00215 3.01676 3.06898 3.42189 3.66734 3.83690 4.00146 4.05592 4.11644 4.25348 4.41832 4.44045 4.49321 4.60533 4.62137 4.80098 4.82452 4.87331 4.98311 5.02063 5.10881 5.14566 5.33947 5.39952 5.50230 5.52598 5.59266 5.91018 6.41403 6.70911 6.74462 6.82915 7.25650 8.78823 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.017157 B = 0.005263 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.575455 B = 5318.962340 C = 6456.381360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.048 4.048 3 C -0.139 4.139 4 C 0.198 3.802 5 C -0.324 4.324 6 C 0.505 3.495 7 O -0.589 6.589 8 N -0.514 5.514 9 C 0.101 3.899 10 C 0.041 3.959 11 O -0.397 6.397 12 C 0.213 3.787 13 C -0.543 4.543 14 H 0.071 0.929 15 C 0.005 3.995 16 N -0.933 5.933 17 Si 0.982 3.018 18 H -0.260 1.260 19 H -0.280 1.280 20 H -0.267 1.267 21 C 0.400 3.600 22 N -0.551 5.551 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.158 0.842 31 H 0.144 0.856 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.019 0.981 35 H -0.008 1.008 36 H -0.028 1.028 37 H 0.270 0.730 38 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.436 -4.226 -9.454 18.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.067 4.067 3 C -0.197 4.197 4 C 0.076 3.924 5 C -0.348 4.348 6 C 0.308 3.692 7 O -0.473 6.473 8 N -0.229 5.229 9 C -0.020 4.020 10 C -0.037 4.037 11 O -0.317 6.317 12 C 0.138 3.862 13 C -0.581 4.581 14 H 0.089 0.911 15 C -0.193 4.193 16 N -0.573 5.573 17 Si 0.805 3.195 18 H -0.184 1.184 19 H -0.205 1.205 20 H -0.192 1.192 21 C 0.118 3.882 22 N -0.273 5.273 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.100 0.900 26 H 0.121 0.879 27 H 0.059 0.941 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.176 0.824 31 H 0.162 0.838 32 H 0.138 0.862 33 H 0.096 0.904 34 H 0.037 0.963 35 H 0.010 0.990 36 H -0.010 1.010 37 H 0.079 0.921 38 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -15.453 -4.073 -9.542 18.612 hybrid contribution 1.548 -0.301 0.249 1.597 sum -13.905 -4.374 -9.293 17.287 Atomic orbital electron populations 1.21723 0.91878 1.02192 1.03295 1.20343 0.97972 0.96383 0.92052 1.21759 1.00263 0.94392 1.03272 1.21619 0.87409 0.89374 0.93980 1.22747 1.10060 1.02865 0.99142 1.17656 0.81781 0.85339 0.84421 1.90877 1.41170 1.28370 1.86869 1.46836 1.40714 1.25249 1.10067 1.22299 0.96674 0.98687 0.84371 1.22808 0.97148 0.84562 0.99204 1.87720 1.34939 1.21917 1.87098 1.19803 0.82391 0.92239 0.91794 1.21334 0.96281 0.94629 1.45849 0.91099 1.25972 0.94288 1.04383 0.94664 1.70082 1.01737 1.38295 1.47139 0.85244 0.77899 0.77176 0.79208 1.18411 1.20511 1.19164 1.25690 0.81812 0.80118 1.00615 1.68259 1.29554 1.31763 0.97694 0.92763 0.92237 0.89952 0.87933 0.94113 0.89612 0.92509 0.82412 0.83802 0.86154 0.90359 0.96259 0.98981 1.00986 0.92143 0.75191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 9.10 71.98 0.66 -1.45 16 2 C -0.05 -0.94 3.17 -11.54 -0.04 -0.98 16 3 C -0.14 -2.77 9.10 71.98 0.66 -2.12 16 4 C 0.20 5.17 5.43 41.83 0.23 5.40 16 5 C -0.32 -9.55 9.68 22.48 0.22 -9.33 16 6 C 0.51 17.31 7.45 84.88 0.63 17.94 16 7 O -0.59 -23.87 16.78 -5.26 -0.09 -23.96 16 8 N -0.51 -15.01 2.55 -655.04 -1.67 -16.68 16 9 C 0.10 2.58 5.81 86.38 0.50 3.08 16 10 C 0.04 1.41 6.28 71.98 0.45 1.86 16 11 O -0.40 -17.29 9.79 -148.98 -1.46 -18.75 16 12 C 0.21 11.49 5.69 71.24 0.41 11.89 16 13 C -0.54 -30.82 9.43 25.60 0.24 -30.58 16 14 H 0.07 3.86 7.81 -2.91 -0.02 3.84 16 15 C 0.01 0.30 5.46 84.65 0.46 0.77 16 16 N -0.93 -55.57 13.29 21.45 0.28 -55.28 16 17 Si 0.98 43.08 29.54 68.60 2.03 45.11 16 18 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 19 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 21 C 0.40 10.50 10.96 180.32 1.98 12.48 16 22 N -0.55 -14.98 9.93 -187.76 -1.86 -16.84 16 23 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.06 1.07 8.05 -2.39 -0.02 1.05 16 25 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.10 1.65 7.87 -2.39 -0.02 1.63 16 27 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 1.28 8.05 -2.39 -0.02 1.26 16 30 H 0.16 4.17 7.95 -2.91 -0.02 4.14 16 31 H 0.14 2.53 8.02 -2.39 -0.02 2.51 16 32 H 0.12 2.88 7.46 -2.39 -0.02 2.87 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 35 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 36 H -0.03 -1.64 8.14 -2.39 -0.02 -1.66 16 37 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 38 H 0.23 4.71 8.03 -2.91 -0.02 4.68 16 Total: -1.00 -72.76 327.45 4.65 -68.11 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.03 Total: 9.31 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 6.39 Total: 8.98 kcal Atomic # 7 Polarization: -85.55 SS G_CDS: -3.25 Total: -88.80 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -1.55 Total: -42.70 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -72.76 4.65 -68.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292632109.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.420 kcal (2) G-P(sol) polarization free energy of solvation -72.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds