Wall clock time and date at job start Mon Mar 30 2020 05:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47546 * 144.10849 * 3 2 1 5 5 C 1.37105 * 119.99588 * 264.09264 * 4 3 2 6 6 H 1.08002 * 119.99387 * 198.06191 * 5 4 3 7 7 C 1.38942 * 120.00094 * 18.05430 * 5 4 3 8 8 N 1.31412 * 120.00339 * 21.02482 * 7 5 4 9 9 Si 1.86798 * 119.99867 * 201.02221 * 7 5 4 10 10 H 1.48493 * 109.47322 * 90.00235 * 9 7 5 11 11 H 1.48505 * 109.47138 * 210.00078 * 9 7 5 12 12 H 1.48506 * 109.47255 * 330.00133 * 9 7 5 13 13 C 1.34772 * 120.00000 * 84.08253 * 4 3 2 14 14 O 1.21283 * 120.00594 * 0.02562 * 13 4 3 15 15 C 1.50703 * 119.99575 * 180.02562 * 13 4 3 16 16 O 1.42905 * 109.46788 * 180.02562 * 15 13 4 17 17 C 1.42906 * 113.99768 * 180.02562 * 16 15 13 18 18 C 1.53125 * 109.51960 * 209.99752 * 17 16 15 19 19 C 1.53037 * 109.27349 * 182.44250 * 18 17 16 20 20 N 1.46842 * 109.52756 * 59.17990 * 19 18 17 21 21 C 1.46852 * 111.19753 * 298.25666 * 20 19 18 22 22 C 1.53033 * 109.52250 * 61.74084 * 21 20 19 23 23 H 4.40641 * 5.51393 * 180.02562 * 4 1 2 24 24 H 1.08998 * 109.47365 * 24.10682 * 3 2 1 25 25 H 1.09004 * 109.47215 * 264.10761 * 3 2 1 26 26 H 0.96996 * 120.00154 * 179.97438 * 8 7 5 27 27 H 1.08995 * 109.47262 * 60.00654 * 15 13 4 28 28 H 1.08997 * 109.47146 * 299.99931 * 15 13 4 29 29 H 1.08993 * 109.57601 * 330.15310 * 17 16 15 30 30 H 1.08992 * 109.50049 * 62.49846 * 18 17 16 31 31 H 1.09002 * 109.49786 * 302.37785 * 18 17 16 32 32 H 1.09005 * 109.46199 * 299.15978 * 19 18 17 33 33 H 1.09003 * 109.46136 * 179.19826 * 19 18 17 34 34 H 1.00902 * 111.00040 * 62.35226 * 20 19 18 35 35 H 1.08998 * 109.46207 * 181.75999 * 21 20 19 36 36 H 1.08997 * 109.45645 * 301.72548 * 21 20 19 37 37 H 1.09002 * 109.49988 * 180.88251 * 22 21 20 38 38 H 1.08996 * 109.50713 * 60.76167 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.1198 -0.8097 5 6 3.4778 0.9180 -2.1215 6 1 4.0984 1.6383 -2.6339 7 6 3.0279 -0.2129 -2.7916 8 7 1.9752 -0.8635 -2.3494 9 14 3.9194 -0.8087 -4.3212 10 1 4.9845 -1.7673 -3.9316 11 1 2.9538 -1.4826 -5.2260 12 1 4.5287 0.3502 -5.0220 13 6 3.2446 2.3476 -0.2652 14 8 2.9407 2.5261 0.8953 15 6 3.7460 3.4989 -1.0984 16 8 3.7740 4.6858 -0.3029 17 6 4.2365 5.8432 -1.0020 18 6 4.9258 6.7934 -0.0188 19 6 5.3647 8.0575 -0.7614 20 7 4.1914 8.7085 -1.3581 21 6 3.5405 7.8325 -2.3407 22 6 3.0472 6.5617 -1.6453 23 1 -1.0501 -0.0001 0.0003 24 1 3.0098 -0.9372 -0.4197 25 1 3.0093 0.1063 1.0223 26 1 1.6610 -1.6528 -2.8174 27 1 3.0820 3.6475 -1.9499 28 1 4.7516 3.2778 -1.4559 29 1 4.9434 5.5442 -1.7759 30 1 5.7987 6.3020 0.4107 31 1 4.2302 7.0615 0.7764 32 1 6.0708 7.7902 -1.5476 33 1 5.8432 8.7424 -0.0612 34 1 3.5390 9.0009 -0.6461 35 1 2.6941 8.3540 -2.7876 36 1 4.2552 7.5664 -3.1194 37 1 2.5780 5.9049 -2.3778 38 1 2.3221 6.8261 -0.8756 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302264425.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:29 Heat of formation + Delta-G solvation = -16.924936 kcal Electronic energy + Delta-G solvation = -20371.260805 eV Core-core repulsion = 17215.708773 eV Total energy + Delta-G solvation = -3155.552032 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.35298 -38.50526 -36.39077 -34.96508 -31.98392 -31.45734 -30.96373 -30.67900 -27.87079 -25.81742 -24.33298 -23.05908 -22.91417 -20.49038 -19.35196 -17.92087 -16.95761 -16.65819 -15.90398 -15.71058 -15.07860 -14.75377 -14.48793 -14.40217 -14.20067 -13.89154 -13.30730 -12.97396 -12.82027 -12.35601 -12.27128 -11.96760 -11.80668 -11.64191 -11.33585 -11.27590 -11.13293 -10.75339 -10.68713 -10.51521 -10.35528 -9.40601 -9.33717 -9.13941 -8.74760 -8.61308 -8.38492 -7.97697 -6.45390 -4.04393 3.03933 3.14600 3.16641 3.52048 3.78441 4.01993 4.10953 4.23990 4.27887 4.74718 4.82563 4.91571 5.02849 5.10643 5.20483 5.25771 5.32429 5.62338 5.66366 5.69983 5.77244 5.82651 5.87247 5.95921 5.99379 6.12857 6.19207 6.25071 6.63490 6.82218 6.85680 7.15934 7.20702 7.26009 7.58820 7.59637 8.23082 8.95162 8.98540 9.36257 9.77998 10.53876 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.021179 B = 0.005029 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.720051 B = 5566.090474 C = 6301.987436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.101 4.101 3 C 0.245 3.755 4 N -0.438 5.438 5 C -0.352 4.352 6 H 0.099 0.901 7 C 0.041 3.959 8 N -0.847 5.847 9 Si 0.919 3.081 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.464 3.536 14 O -0.585 6.585 15 C 0.066 3.934 16 O -0.360 6.360 17 C 0.089 3.911 18 C -0.154 4.154 19 C 0.060 3.940 20 N -0.688 5.688 21 C 0.060 3.940 22 C -0.181 4.181 23 H 0.198 0.802 24 H 0.105 0.895 25 H 0.067 0.933 26 H 0.271 0.729 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.342 0.658 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.534 10.452 -1.492 11.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.102 4.102 3 C 0.122 3.878 4 N -0.159 5.159 5 C -0.479 4.479 6 H 0.117 0.883 7 C -0.167 4.167 8 N -0.483 5.483 9 Si 0.745 3.255 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.252 3.748 14 O -0.469 6.469 15 C -0.014 4.014 16 O -0.278 6.278 17 C 0.030 3.970 18 C -0.193 4.193 19 C -0.070 4.070 20 N -0.317 5.317 21 C -0.070 4.070 22 C -0.221 4.221 23 H 0.215 0.785 24 H 0.123 0.877 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.159 0.841 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.610 10.708 -1.271 11.727 hybrid contribution -0.376 -1.277 -0.792 1.549 sum 4.233 9.431 -2.062 10.541 Atomic orbital electron populations 1.24189 0.95322 1.03409 1.06098 1.23127 0.94348 0.97441 0.95291 1.18037 0.84271 0.91569 0.93903 1.43611 1.56286 1.05165 1.10790 1.19576 1.31556 1.09682 0.87110 0.88335 1.25283 0.94757 0.97484 0.99130 1.70119 1.18842 1.18823 1.40521 0.86065 0.79250 0.79280 0.80884 1.20116 1.20923 1.19462 1.19777 0.83572 0.83405 0.88070 1.90566 1.54830 1.83481 1.18011 1.22101 1.00672 0.84881 0.93717 1.88027 1.86727 1.15803 1.37255 1.22044 0.94408 0.86487 0.94033 1.22350 1.01351 0.96617 0.98969 1.22024 0.93461 0.93385 0.98122 1.60680 1.10794 1.40631 1.19551 1.22004 0.98787 0.91261 0.94974 1.22815 0.99337 0.98731 1.01211 0.78507 0.87705 0.91477 0.91794 0.91204 0.91639 0.92346 0.90713 0.91052 0.90822 0.90272 0.84101 0.90486 0.90857 0.90977 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.31 19.25 29.55 0.57 -5.74 16 2 C -0.10 -2.53 11.52 -37.12 -0.43 -2.96 16 3 C 0.24 6.03 5.06 -6.83 -0.03 5.99 16 4 N -0.44 -11.11 2.60 -117.94 -0.31 -11.41 16 5 C -0.35 -8.67 9.12 -14.93 -0.14 -8.80 16 6 H 0.10 2.26 6.57 -52.49 -0.34 1.91 16 7 C 0.04 0.98 4.87 -17.47 -0.09 0.90 16 8 N -0.85 -21.64 9.47 55.50 0.53 -21.12 16 9 Si 0.92 18.71 29.60 -169.99 -5.03 13.68 16 10 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 11 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 12 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 13 C 0.46 11.68 7.65 -10.99 -0.08 11.59 16 14 O -0.58 -16.42 16.18 -14.36 -0.23 -16.65 16 15 C 0.07 1.36 4.70 36.01 0.17 1.53 16 16 O -0.36 -7.19 9.53 -55.14 -0.53 -7.71 16 17 C 0.09 1.31 2.68 -26.60 -0.07 1.24 16 18 C -0.15 -1.91 5.73 -26.65 -0.15 -2.06 16 19 C 0.06 0.60 6.55 -3.84 -0.03 0.57 16 20 N -0.69 -7.03 6.87 -113.82 -0.78 -7.81 16 21 C 0.06 0.63 6.55 -3.83 -0.03 0.60 16 22 C -0.18 -2.38 5.70 -26.65 -0.15 -2.53 16 23 H 0.20 3.74 7.80 -54.09 -0.42 3.32 16 24 H 0.11 2.56 6.47 -51.93 -0.34 2.23 16 25 H 0.07 1.59 7.61 -51.93 -0.39 1.20 16 26 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 27 H 0.07 1.40 7.92 -51.93 -0.41 0.99 16 28 H 0.07 1.23 7.63 -51.93 -0.40 0.84 16 29 H 0.06 0.81 7.79 -51.93 -0.40 0.40 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.34 3.21 8.86 -39.29 -0.35 2.86 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.99 7.96 -51.93 -0.41 0.58 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 318.85 15.07 4.81 4.81 Total: -1.00 -30.55 318.85 -7.57 -38.12 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -5.56 Total: 7.77 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -0.46 Total: 0.33 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: -0.56 Total: -40.34 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.76 Total: -24.36 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.55 -7.57 -38.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302264425.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.193 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds