Wall clock time and date at job start Mon Mar 30 2020 05:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47546 * 144.10849 * 3 2 1 5 5 C 1.37105 * 119.99588 * 264.09264 * 4 3 2 6 6 H 1.08002 * 119.99387 * 198.06191 * 5 4 3 7 7 C 1.38942 * 120.00094 * 18.05430 * 5 4 3 8 8 N 1.31412 * 120.00339 * 21.02482 * 7 5 4 9 9 Si 1.86798 * 119.99867 * 201.02221 * 7 5 4 10 10 H 1.48493 * 109.47322 * 90.00235 * 9 7 5 11 11 H 1.48505 * 109.47138 * 210.00078 * 9 7 5 12 12 H 1.48506 * 109.47255 * 330.00133 * 9 7 5 13 13 C 1.34772 * 120.00000 * 84.08253 * 4 3 2 14 14 O 1.21283 * 120.00594 * 0.02562 * 13 4 3 15 15 C 1.50703 * 119.99575 * 180.02562 * 13 4 3 16 16 O 1.42905 * 109.46788 * 180.02562 * 15 13 4 17 17 C 1.42906 * 113.99768 * 180.02562 * 16 15 13 18 18 C 1.53125 * 109.51960 * 209.99752 * 17 16 15 19 19 C 1.53037 * 109.27349 * 182.44250 * 18 17 16 20 20 N 1.46842 * 109.52756 * 59.17990 * 19 18 17 21 21 C 1.46852 * 111.19753 * 298.25666 * 20 19 18 22 22 C 1.53033 * 109.52250 * 61.74084 * 21 20 19 23 23 H 4.40641 * 5.51393 * 180.02562 * 4 1 2 24 24 H 1.08998 * 109.47365 * 24.10682 * 3 2 1 25 25 H 1.09004 * 109.47215 * 264.10761 * 3 2 1 26 26 H 0.96996 * 120.00154 * 179.97438 * 8 7 5 27 27 H 1.08995 * 109.47262 * 60.00654 * 15 13 4 28 28 H 1.08997 * 109.47146 * 299.99931 * 15 13 4 29 29 H 1.08993 * 109.57601 * 330.15310 * 17 16 15 30 30 H 1.08992 * 109.50049 * 62.49846 * 18 17 16 31 31 H 1.09002 * 109.49786 * 302.37785 * 18 17 16 32 32 H 1.09005 * 109.46199 * 299.15978 * 19 18 17 33 33 H 1.09003 * 109.46136 * 179.19826 * 19 18 17 34 34 H 1.00902 * 111.00040 * 62.35226 * 20 19 18 35 35 H 1.08998 * 109.46207 * 181.75999 * 21 20 19 36 36 H 1.08997 * 109.45645 * 301.72548 * 21 20 19 37 37 H 1.09002 * 109.49988 * 180.88251 * 22 21 20 38 38 H 1.08996 * 109.50713 * 60.76167 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.1198 -0.8097 5 6 3.4778 0.9180 -2.1215 6 1 4.0984 1.6383 -2.6339 7 6 3.0279 -0.2129 -2.7916 8 7 1.9752 -0.8635 -2.3494 9 14 3.9194 -0.8087 -4.3212 10 1 4.9845 -1.7673 -3.9316 11 1 2.9538 -1.4826 -5.2260 12 1 4.5287 0.3502 -5.0220 13 6 3.2446 2.3476 -0.2652 14 8 2.9407 2.5261 0.8953 15 6 3.7460 3.4989 -1.0984 16 8 3.7740 4.6858 -0.3029 17 6 4.2365 5.8432 -1.0020 18 6 4.9258 6.7934 -0.0188 19 6 5.3647 8.0575 -0.7614 20 7 4.1914 8.7085 -1.3581 21 6 3.5405 7.8325 -2.3407 22 6 3.0472 6.5617 -1.6453 23 1 -1.0501 -0.0001 0.0003 24 1 3.0098 -0.9372 -0.4197 25 1 3.0093 0.1063 1.0223 26 1 1.6610 -1.6528 -2.8174 27 1 3.0820 3.6475 -1.9499 28 1 4.7516 3.2778 -1.4559 29 1 4.9434 5.5442 -1.7759 30 1 5.7987 6.3020 0.4107 31 1 4.2302 7.0615 0.7764 32 1 6.0708 7.7902 -1.5476 33 1 5.8432 8.7424 -0.0612 34 1 3.5390 9.0009 -0.6461 35 1 2.6941 8.3540 -2.7876 36 1 4.2552 7.5664 -3.1194 37 1 2.5780 5.9049 -2.3778 38 1 2.3221 6.8261 -0.8756 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302264425.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:28 Heat of formation + Delta-G solvation = -36.667562 kcal Electronic energy + Delta-G solvation = -20372.116910 eV Core-core repulsion = 17215.708773 eV Total energy + Delta-G solvation = -3156.408137 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.82718 -40.01162 -37.74407 -36.86541 -33.86512 -33.36166 -31.93639 -31.76320 -29.59167 -27.63420 -26.15009 -24.06193 -23.86735 -21.56571 -21.17923 -19.74591 -18.58153 -18.32843 -17.35769 -17.10450 -16.68832 -16.17378 -16.05609 -15.66163 -15.50186 -15.32478 -14.86407 -14.42096 -14.02563 -13.84237 -13.78607 -13.51893 -13.26057 -13.15240 -12.81030 -12.60092 -12.43135 -12.21976 -12.09461 -11.86955 -11.47732 -11.27010 -11.25879 -10.66362 -10.48899 -10.36283 -9.91682 -9.44664 -8.31415 -5.97913 1.40185 1.49724 1.59851 1.76142 1.98929 2.30677 2.36998 2.50831 3.05271 3.31473 3.41502 3.78152 3.85483 3.88535 4.08102 4.10300 4.16820 4.28805 4.39384 4.40477 4.42446 4.64296 4.71934 4.75700 4.86783 4.91594 4.97968 4.99636 5.16788 5.21525 5.34630 5.38889 5.69182 6.02594 6.17090 6.36172 6.44278 7.05044 7.09331 7.44926 7.86538 8.67984 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.021179 B = 0.005029 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.720051 B = 5566.090474 C = 6301.987436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.149 4.149 3 C 0.244 3.756 4 N -0.443 5.443 5 C -0.372 4.372 6 H 0.115 0.885 7 C 0.002 3.998 8 N -0.874 5.874 9 Si 0.991 3.009 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.257 1.257 13 C 0.444 3.556 14 O -0.626 6.626 15 C 0.080 3.920 16 O -0.389 6.389 17 C 0.078 3.922 18 C -0.149 4.149 19 C 0.067 3.933 20 N -0.687 5.687 21 C 0.067 3.933 22 C -0.177 4.177 23 H 0.236 0.764 24 H 0.100 0.900 25 H 0.064 0.936 26 H 0.272 0.728 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.346 0.654 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.243 11.502 -3.261 13.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.150 4.150 3 C 0.122 3.878 4 N -0.162 5.162 5 C -0.499 4.499 6 H 0.132 0.868 7 C -0.203 4.203 8 N -0.510 5.510 9 Si 0.814 3.186 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.180 1.180 13 C 0.234 3.766 14 O -0.513 6.513 15 C 0.001 3.999 16 O -0.308 6.308 17 C 0.020 3.980 18 C -0.188 4.188 19 C -0.062 4.062 20 N -0.316 5.316 21 C -0.063 4.063 22 C -0.216 4.216 23 H 0.253 0.747 24 H 0.118 0.882 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.164 0.836 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.328 11.773 -3.050 13.278 hybrid contribution -0.667 -1.616 -0.203 1.760 sum 4.661 10.157 -3.253 11.639 Atomic orbital electron populations 1.25140 0.96382 1.01533 1.04225 1.23513 0.95201 0.99251 0.97083 1.17978 0.84680 0.91440 0.93719 1.43866 1.55642 1.05422 1.11268 1.20026 1.32194 1.10649 0.86998 0.86789 1.26170 0.94978 0.97072 1.02078 1.70240 1.19916 1.18972 1.41846 0.84962 0.77749 0.78877 0.76971 1.19791 1.21329 1.18043 1.20591 0.83477 0.84352 0.88155 1.90517 1.56796 1.84207 1.19825 1.21880 1.01405 0.83957 0.92642 1.87999 1.87395 1.16781 1.38670 1.22425 0.95421 0.85274 0.94865 1.22373 1.00709 0.97252 0.98485 1.22049 0.93455 0.92304 0.98435 1.60713 1.10996 1.40118 1.19740 1.21994 0.99445 0.89962 0.94875 1.22789 0.98424 0.99750 1.00673 0.74749 0.88197 0.91806 0.91798 0.90761 0.89693 0.91152 0.90921 0.92180 0.90069 0.88406 0.83563 0.89137 0.90151 0.91881 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -11.67 19.25 74.32 1.43 -10.24 16 2 C -0.15 -7.62 11.52 31.12 0.36 -7.26 16 3 C 0.24 12.41 5.06 84.57 0.43 12.83 16 4 N -0.44 -22.80 2.60 -645.43 -1.68 -24.48 16 5 C -0.37 -18.17 9.12 84.04 0.77 -17.41 16 6 H 0.11 5.07 6.57 -2.91 -0.02 5.05 16 7 C 0.00 0.08 4.87 84.92 0.41 0.49 16 8 N -0.87 -44.54 9.47 21.66 0.21 -44.33 16 9 Si 0.99 37.40 29.60 68.60 2.03 39.43 16 10 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 11 H -0.29 -10.97 7.11 99.48 0.71 -10.27 16 12 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 13 C 0.44 22.85 7.65 87.66 0.67 23.52 16 14 O -0.63 -36.33 16.18 16.00 0.26 -36.07 16 15 C 0.08 3.32 4.70 71.24 0.33 3.65 16 16 O -0.39 -15.64 9.53 -129.94 -1.24 -16.88 16 17 C 0.08 2.22 2.68 30.68 0.08 2.30 16 18 C -0.15 -3.53 5.73 30.65 0.18 -3.35 16 19 C 0.07 1.18 6.55 86.33 0.57 1.74 16 20 N -0.69 -12.37 6.87 -514.01 -3.53 -15.90 16 21 C 0.07 1.27 6.55 86.32 0.57 1.83 16 22 C -0.18 -4.48 5.70 30.65 0.17 -4.30 16 23 H 0.24 8.40 7.80 -4.41 -0.03 8.37 16 24 H 0.10 5.05 6.47 -2.39 -0.02 5.03 16 25 H 0.06 3.18 7.61 -2.38 -0.02 3.16 16 26 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 27 H 0.07 2.96 7.92 -2.39 -0.02 2.94 16 28 H 0.09 3.12 7.63 -2.39 -0.02 3.10 16 29 H 0.07 1.83 7.79 -2.39 -0.02 1.81 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.35 5.80 8.86 -89.69 -0.79 5.01 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 1.69 7.96 -2.39 -0.02 1.67 16 38 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -65.79 318.85 2.27 -63.51 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.26 Total: 30.92 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 5.97 Total: 3.80 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -5.00 Total: -84.71 kcal Atomic # 8 Polarization: -51.97 SS G_CDS: -0.98 Total: -52.95 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.43 kcal Total: -65.79 2.27 -63.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302264425.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.846 kcal (2) G-P(sol) polarization free energy of solvation -65.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds