Wall clock time and date at job start Mon Mar 30 2020 04:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 120.00030 * 2 1 4 4 H 1.48507 * 109.47372 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47520 * 299.99984 * 3 2 1 6 6 H 1.48503 * 109.47195 * 60.00154 * 3 2 1 7 7 C 1.38958 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00112 * 179.97438 * 7 2 1 9 9 N 1.37093 * 119.99543 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99857 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00050 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00244 * 180.02562 * 10 9 7 13 13 O 1.42897 * 109.47432 * 180.02562 * 12 10 9 14 14 C 1.42896 * 114.00379 * 179.97438 * 13 12 10 15 15 H 1.08999 * 110.43353 * 332.53574 * 14 13 12 16 16 C 1.55454 * 110.59514 * 95.14159 * 14 13 12 17 17 H 1.09001 * 113.26036 * 348.16685 * 16 14 13 18 18 N 1.48161 * 105.48552 * 223.02619 * 16 14 13 19 19 C 1.47213 * 108.83804 * 263.70454 * 18 16 14 20 20 C 1.54365 * 106.06525 * 12.89469 * 19 18 16 21 21 H 1.09002 * 113.63053 * 203.21921 * 20 19 18 22 22 C 1.54787 * 109.30478 * 75.24790 * 20 19 18 23 23 C 1.55788 * 110.48632 * 210.00283 * 14 13 12 24 24 H 1.09003 * 115.98809 * 45.88603 * 23 14 13 25 25 C 1.56753 * 100.31484 * 279.79761 * 23 14 13 26 26 C 1.56112 * 104.35815 * 111.79270 * 16 14 13 27 27 H 1.08993 * 117.01373 * 203.81484 * 26 16 14 28 28 H 0.96992 * 120.00086 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00443 * 0.02562 * 9 7 2 30 30 H 1.09007 * 109.47343 * 60.00382 * 12 10 9 31 31 H 1.09007 * 109.47458 * 300.00800 * 12 10 9 32 32 H 1.00895 * 111.00302 * 141.25690 * 18 16 14 33 33 H 1.08997 * 110.13987 * 253.74212 * 19 18 16 34 34 H 1.09005 * 110.13571 * 132.03917 * 19 18 16 35 35 H 1.09003 * 110.30388 * 11.03545 * 22 20 19 36 36 H 1.09003 * 110.30424 * 133.19116 * 22 20 19 37 37 H 1.09004 * 111.98590 * 188.87218 * 25 23 14 38 38 H 1.08995 * 112.05118 * 62.47147 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0021 12 6 1.2438 -4.8629 -0.0022 13 8 2.1724 -5.9491 -0.0027 14 6 1.5579 -7.2392 -0.0026 15 1 0.5762 -7.1931 0.4688 16 6 1.4400 -7.7887 -1.4520 17 1 1.6450 -7.0378 -2.2151 18 7 0.0842 -8.3793 -1.5421 19 6 0.1791 -9.8274 -1.2948 20 6 1.5922 -10.0715 -0.7235 21 1 1.9501 -11.0914 -0.8639 22 6 1.6376 -9.5976 0.7494 23 6 2.4647 -8.2750 0.7266 24 1 2.8867 -7.9535 1.6788 25 6 3.4912 -8.6005 -0.4124 26 6 2.4314 -8.9940 -1.4909 27 1 2.8196 -9.2843 -2.4671 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3906 -0.0005 30 1 0.6168 -4.9202 -0.8920 31 1 0.6174 -4.9213 0.8880 32 1 -0.3325 -8.1928 -2.4418 33 1 0.0516 -10.3766 -2.2276 34 1 -0.5762 -10.1349 -0.5715 35 1 0.6310 -9.3844 1.1093 36 1 2.1118 -10.3534 1.3755 37 1 4.1383 -9.4380 -0.1516 38 1 4.0670 -7.7233 -0.7073 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302586445.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:05 Heat of formation + Delta-G solvation = -66.565625 kcal Electronic energy + Delta-G solvation = -20515.818851 eV Core-core repulsion = 17358.114237 eV Total energy + Delta-G solvation = -3157.704614 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.31789 -38.26784 -36.46176 -34.13783 -33.83092 -31.23393 -30.72733 -28.71274 -27.48093 -26.09525 -24.67451 -23.88825 -20.26338 -20.17216 -19.39678 -18.88729 -17.91676 -17.48311 -16.03366 -15.90216 -15.47207 -14.94047 -14.59792 -14.33949 -13.88122 -13.84352 -13.44983 -13.16877 -12.80130 -12.51220 -11.92995 -11.61558 -11.53395 -11.39540 -11.25596 -11.08655 -11.02321 -10.81127 -10.70129 -10.56328 -10.32452 -10.25989 -10.19216 -9.52329 -9.33702 -8.49844 -8.29233 -7.95238 -6.39810 -3.80742 3.18386 3.28638 3.35916 3.64602 3.91990 4.09194 4.21513 4.32175 4.38782 4.54444 4.92352 5.02019 5.09849 5.15768 5.23262 5.26244 5.28454 5.31899 5.40379 5.55855 5.67178 5.70734 5.77035 5.78884 5.90161 5.95035 5.98443 6.08208 6.10411 6.24906 6.28491 6.34099 6.71115 7.23153 7.57582 7.62039 8.08488 8.63818 9.19949 9.54938 10.07058 10.78135 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.044555 B = 0.003838 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.279338 B = 7293.763618 C = 7581.311446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.562 5.562 10 C 0.443 3.557 11 O -0.577 6.577 12 C 0.057 3.943 13 O -0.351 6.351 14 C 0.094 3.906 15 H 0.077 0.923 16 C 0.053 3.947 17 H 0.096 0.904 18 N -0.678 5.678 19 C 0.053 3.947 20 C -0.108 4.108 21 H 0.091 0.909 22 C -0.109 4.109 23 C -0.097 4.097 24 H 0.105 0.895 25 C -0.116 4.116 26 C -0.125 4.125 27 H 0.096 0.904 28 H 0.271 0.729 29 H 0.393 0.607 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.337 0.663 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.631 -19.758 -1.912 19.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.228 3.772 11 O -0.460 6.460 12 C -0.023 4.023 13 O -0.268 6.268 14 C 0.034 3.966 15 H 0.095 0.905 16 C -0.057 4.057 17 H 0.114 0.886 18 N -0.307 5.307 19 C -0.076 4.076 20 C -0.127 4.127 21 H 0.109 0.891 22 C -0.146 4.146 23 C -0.116 4.116 24 H 0.123 0.877 25 C -0.154 4.154 26 C -0.145 4.145 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.226 0.774 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.153 0.847 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.967 -19.392 -1.247 19.456 hybrid contribution -0.279 0.489 -0.952 1.106 sum -1.246 -18.903 -2.199 19.071 Atomic orbital electron populations 1.69620 1.05941 1.28075 1.50681 1.25264 0.95648 0.99696 0.97323 0.85786 0.79731 0.81048 0.77698 1.19181 1.20746 1.20725 1.19762 0.93434 0.82044 1.47520 0.87800 1.41766 1.09220 1.04294 1.64726 1.19622 0.88388 0.84420 0.84739 1.90537 1.13749 1.87032 1.54705 1.22178 0.91907 0.87454 1.00787 1.88013 1.31852 1.12299 1.94599 1.23576 0.96130 0.83159 0.93690 0.90480 1.24014 0.86638 0.96198 0.98813 0.88554 1.61945 1.20563 1.11148 1.37063 1.22673 0.96783 0.88565 0.99612 1.23215 0.94977 0.98697 0.95824 0.89066 1.22602 1.00641 0.96203 0.95171 1.23554 0.95773 0.93706 0.98525 0.87667 1.23314 0.96445 1.01189 0.94453 1.24295 0.96518 0.95137 0.98516 0.88562 0.91904 0.77373 0.91997 0.91972 0.84680 0.93860 0.90607 0.91118 0.91389 0.91399 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.28 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 8 H 0.10 3.11 7.16 -52.49 -0.38 2.74 16 9 N -0.56 -14.74 5.29 -10.96 -0.06 -14.79 16 10 C 0.44 11.16 7.86 -10.99 -0.09 11.08 16 11 O -0.58 -16.87 16.08 -14.36 -0.23 -17.10 16 12 C 0.06 1.11 6.25 36.00 0.23 1.33 16 13 O -0.35 -6.73 9.52 -55.14 -0.53 -7.25 16 14 C 0.09 1.37 2.42 -23.94 -0.06 1.31 16 15 H 0.08 1.13 7.33 -51.93 -0.38 0.75 16 16 C 0.05 0.68 4.47 -64.05 -0.29 0.39 16 17 H 0.10 1.34 8.12 -51.93 -0.42 0.92 16 18 N -0.68 -7.40 6.62 -101.73 -0.67 -8.07 16 19 C 0.05 0.48 6.76 -2.94 -0.02 0.46 16 20 C -0.11 -1.00 4.23 -86.99 -0.37 -1.37 16 21 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 22 C -0.11 -1.08 5.82 -24.18 -0.14 -1.22 16 23 C -0.10 -1.22 4.90 -85.50 -0.42 -1.64 16 24 H 0.11 1.36 8.14 -51.93 -0.42 0.93 16 25 C -0.12 -1.40 6.40 -22.97 -0.15 -1.55 16 26 C -0.13 -1.36 4.96 -85.24 -0.42 -1.79 16 27 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 29 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 1.09 8.11 -51.92 -0.42 0.67 16 32 H 0.34 3.24 8.91 -39.29 -0.35 2.89 16 33 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.67 7.84 -51.93 -0.41 0.27 16 35 H 0.07 0.73 7.28 -51.93 -0.38 0.35 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 1.17 8.08 -51.93 -0.42 0.75 16 LS Contribution 306.73 15.07 4.62 4.62 Total: -1.00 -32.21 306.73 -8.70 -40.91 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -5.57 Total: 10.66 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.96 Total: -1.15 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.01 Total: -46.94 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.76 Total: -24.35 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.21 -8.70 -40.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302586445.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.655 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds