Wall clock time and date at job start Mon Mar 30 2020 04:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 120.00030 * 2 1 4 4 H 1.48507 * 109.47372 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47520 * 299.99984 * 3 2 1 6 6 H 1.48503 * 109.47195 * 60.00154 * 3 2 1 7 7 C 1.38958 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00112 * 179.97438 * 7 2 1 9 9 N 1.37093 * 119.99543 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99857 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00050 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00244 * 180.02562 * 10 9 7 13 13 O 1.42897 * 109.47432 * 180.02562 * 12 10 9 14 14 C 1.42896 * 114.00379 * 179.97438 * 13 12 10 15 15 H 1.08999 * 110.43353 * 332.53574 * 14 13 12 16 16 C 1.55454 * 110.59514 * 95.14159 * 14 13 12 17 17 H 1.09001 * 113.26036 * 348.16685 * 16 14 13 18 18 N 1.48161 * 105.48552 * 223.02619 * 16 14 13 19 19 C 1.47213 * 108.83804 * 263.70454 * 18 16 14 20 20 C 1.54365 * 106.06525 * 12.89469 * 19 18 16 21 21 H 1.09002 * 113.63053 * 203.21921 * 20 19 18 22 22 C 1.54787 * 109.30478 * 75.24790 * 20 19 18 23 23 C 1.55788 * 110.48632 * 210.00283 * 14 13 12 24 24 H 1.09003 * 115.98809 * 45.88603 * 23 14 13 25 25 C 1.56753 * 100.31484 * 279.79761 * 23 14 13 26 26 C 1.56112 * 104.35815 * 111.79270 * 16 14 13 27 27 H 1.08993 * 117.01373 * 203.81484 * 26 16 14 28 28 H 0.96992 * 120.00086 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00443 * 0.02562 * 9 7 2 30 30 H 1.09007 * 109.47343 * 60.00382 * 12 10 9 31 31 H 1.09007 * 109.47458 * 300.00800 * 12 10 9 32 32 H 1.00895 * 111.00302 * 141.25690 * 18 16 14 33 33 H 1.08997 * 110.13987 * 253.74212 * 19 18 16 34 34 H 1.09005 * 110.13571 * 132.03917 * 19 18 16 35 35 H 1.09003 * 110.30388 * 11.03545 * 22 20 19 36 36 H 1.09003 * 110.30424 * 133.19116 * 22 20 19 37 37 H 1.09004 * 111.98590 * 188.87218 * 25 23 14 38 38 H 1.08995 * 112.05118 * 62.47147 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0021 12 6 1.2438 -4.8629 -0.0022 13 8 2.1724 -5.9491 -0.0027 14 6 1.5579 -7.2392 -0.0026 15 1 0.5762 -7.1931 0.4688 16 6 1.4400 -7.7887 -1.4520 17 1 1.6450 -7.0378 -2.2151 18 7 0.0842 -8.3793 -1.5421 19 6 0.1791 -9.8274 -1.2948 20 6 1.5922 -10.0715 -0.7235 21 1 1.9501 -11.0914 -0.8639 22 6 1.6376 -9.5976 0.7494 23 6 2.4647 -8.2750 0.7266 24 1 2.8867 -7.9535 1.6788 25 6 3.4912 -8.6005 -0.4124 26 6 2.4314 -8.9940 -1.4909 27 1 2.8196 -9.2843 -2.4671 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3906 -0.0005 30 1 0.6168 -4.9202 -0.8920 31 1 0.6174 -4.9213 0.8880 32 1 -0.3325 -8.1928 -2.4418 33 1 0.0516 -10.3766 -2.2276 34 1 -0.5762 -10.1349 -0.5715 35 1 0.6310 -9.3844 1.1093 36 1 2.1118 -10.3534 1.3755 37 1 4.1383 -9.4380 -0.1516 38 1 4.0670 -7.7233 -0.7073 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302586445.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:05 Heat of formation + Delta-G solvation = -89.700993 kcal Electronic energy + Delta-G solvation = -20516.822076 eV Core-core repulsion = 17358.114237 eV Total energy + Delta-G solvation = -3158.707839 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.24226 -40.20432 -37.95869 -35.98532 -34.99635 -33.35387 -31.66621 -29.78880 -29.01040 -27.05861 -26.41513 -25.07080 -21.42727 -21.14734 -21.05665 -20.02364 -19.81272 -18.50430 -17.67544 -17.25875 -16.81637 -16.52558 -16.25279 -15.69580 -15.53823 -14.79724 -14.69782 -14.44383 -14.26884 -13.74646 -13.55371 -13.17134 -12.98737 -12.70872 -12.45211 -12.40453 -12.19745 -12.12089 -12.04532 -11.63064 -11.59125 -11.56753 -11.46603 -11.24915 -10.61626 -10.37085 -10.07463 -9.37439 -8.50382 -6.00384 1.35462 1.41468 1.56189 1.94973 2.18448 2.47347 3.13887 3.15503 3.37080 3.44817 3.59909 3.67141 4.04418 4.13707 4.19964 4.23477 4.32663 4.34116 4.37143 4.40056 4.43123 4.57002 4.69606 4.79324 4.88199 4.96547 5.04930 5.11243 5.16260 5.18160 5.31551 5.37933 5.46927 5.83754 5.92700 6.30061 6.47042 6.56910 7.07343 7.46970 8.02785 8.67314 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.044555 B = 0.003838 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.279338 B = 7293.763618 C = 7581.311446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 0.997 3.003 4 H -0.274 1.274 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.338 4.338 8 H 0.079 0.921 9 N -0.565 5.565 10 C 0.435 3.565 11 O -0.625 6.625 12 C 0.073 3.927 13 O -0.380 6.380 14 C 0.086 3.914 15 H 0.076 0.924 16 C 0.052 3.948 17 H 0.077 0.923 18 N -0.685 5.685 19 C 0.052 3.948 20 C -0.098 4.098 21 H 0.117 0.883 22 C -0.101 4.101 23 C -0.105 4.105 24 H 0.095 0.905 25 C -0.117 4.117 26 C -0.121 4.121 27 H 0.109 0.891 28 H 0.280 0.720 29 H 0.399 0.601 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.345 0.655 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 -21.172 -2.113 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.210 4.210 3 Si 0.820 3.180 4 H -0.199 1.199 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.468 4.468 8 H 0.097 0.903 9 N -0.203 5.203 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.007 4.007 13 O -0.299 6.299 14 C 0.027 3.973 15 H 0.094 0.906 16 C -0.059 4.059 17 H 0.095 0.905 18 N -0.315 5.315 19 C -0.077 4.077 20 C -0.117 4.117 21 H 0.135 0.865 22 C -0.138 4.138 23 C -0.124 4.124 24 H 0.113 0.887 25 C -0.155 4.155 26 C -0.141 4.141 27 H 0.127 0.873 28 H 0.090 0.910 29 H 0.233 0.767 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.161 0.839 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.035 -20.826 -1.453 20.975 hybrid contribution 0.010 0.918 -0.880 1.272 sum -2.025 -19.908 -2.333 20.146 Atomic orbital electron populations 1.69673 1.06868 1.29514 1.49731 1.26087 0.96593 1.02438 0.95843 0.84827 0.77950 0.76727 0.78540 1.19863 1.19303 1.19294 1.19726 0.92761 0.83791 1.50480 0.90346 1.41804 1.09406 1.04345 1.64704 1.20619 0.88161 0.85984 0.82974 1.90494 1.16092 1.87996 1.56632 1.21958 0.91118 0.84860 1.02774 1.87984 1.33023 1.13868 1.94987 1.23911 0.96312 0.81489 0.95553 0.90559 1.23865 0.88492 0.96684 0.96819 0.90487 1.61889 1.19289 1.12552 1.37727 1.22758 0.96823 0.87394 1.00695 1.23260 0.94584 0.99257 0.94603 0.86492 1.22581 1.00029 0.94880 0.96316 1.23632 0.96176 0.94561 0.98036 0.88682 1.23290 0.96706 1.00579 0.94901 1.24317 0.95700 0.95044 0.98990 0.87312 0.91045 0.76697 0.89859 0.89702 0.83861 0.92075 0.89972 0.91337 0.89389 0.89327 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.95 13.05 21.67 0.28 -49.66 16 2 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 3 Si 1.00 43.41 29.55 68.60 2.03 45.44 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.34 -19.86 9.68 84.04 0.81 -19.05 16 8 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 9 N -0.56 -30.41 5.29 -306.98 -1.62 -32.03 16 10 C 0.44 22.67 7.86 87.66 0.69 23.36 16 11 O -0.63 -38.32 16.08 15.97 0.26 -38.06 16 12 C 0.07 2.86 6.25 71.23 0.45 3.30 16 13 O -0.38 -15.00 9.52 -129.94 -1.24 -16.24 16 14 C 0.09 2.49 2.42 32.40 0.08 2.57 16 15 H 0.08 2.19 7.33 -2.39 -0.02 2.17 16 16 C 0.05 1.28 4.47 46.60 0.21 1.49 16 17 H 0.08 2.18 8.12 -2.39 -0.02 2.17 16 18 N -0.68 -13.66 6.62 -475.77 -3.15 -16.82 16 19 C 0.05 0.78 6.76 86.71 0.59 1.36 16 20 C -0.10 -1.49 4.23 -8.44 -0.04 -1.53 16 21 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 22 C -0.10 -1.75 5.82 32.25 0.19 -1.56 16 23 C -0.11 -2.59 4.90 -7.48 -0.04 -2.63 16 24 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 25 C -0.12 -2.75 6.40 33.03 0.21 -2.54 16 26 C -0.12 -2.42 4.96 -7.31 -0.04 -2.46 16 27 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 29 H 0.40 20.10 7.90 -92.71 -0.73 19.37 16 30 H 0.08 2.90 8.14 -2.38 -0.02 2.88 16 31 H 0.09 2.93 8.11 -2.38 -0.02 2.91 16 32 H 0.34 6.01 8.91 -89.70 -0.80 5.21 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 1.17 7.84 -2.38 -0.02 1.16 16 35 H 0.07 1.24 7.28 -2.39 -0.02 1.23 16 36 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 1.68 8.14 -2.38 -0.02 1.67 16 38 H 0.05 1.44 8.08 -2.39 -0.02 1.42 16 Total: -1.00 -71.02 306.73 -0.32 -71.33 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.45 Total: 33.76 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 3.58 Total: 2.28 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -4.49 Total: -98.51 kcal Atomic # 8 Polarization: -53.32 SS G_CDS: -0.98 Total: -54.30 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -71.02 -0.32 -71.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302586445.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.367 kcal (2) G-P(sol) polarization free energy of solvation -71.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds