Wall clock time and date at job start Mon Mar 30 2020 04:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99650 * 2 1 4 4 H 1.48503 * 109.47372 * 270.00301 * 3 2 1 5 5 H 1.48502 * 109.47298 * 30.00014 * 3 2 1 6 6 H 1.48494 * 109.47159 * 150.00089 * 3 2 1 7 7 C 1.37877 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99801 * 0.02562 * 7 2 1 9 9 C 1.50693 * 119.99717 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47240 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47769 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00347 * 179.97438 * 11 10 9 13 13 H 1.08998 * 110.35288 * 32.86255 * 12 11 10 14 14 C 1.54593 * 110.31124 * 270.71771 * 12 11 10 15 15 C 1.54933 * 102.92591 * 219.12802 * 14 12 11 16 16 N 1.48538 * 103.22579 * 37.41127 * 15 14 12 17 17 C 1.46897 * 111.00123 * 200.28130 * 16 15 14 18 18 C 1.53003 * 109.47395 * 307.40108 * 17 16 15 19 19 F 1.39902 * 109.47108 * 59.99628 * 18 17 16 20 20 F 1.39898 * 109.47180 * 180.02562 * 18 17 16 21 21 F 1.39906 * 109.46488 * 300.00139 * 18 17 16 22 22 C 1.47899 * 105.82096 * 320.79703 * 16 15 14 23 23 H 0.97004 * 120.00583 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47543 * 60.00104 * 9 7 2 25 25 H 1.09005 * 109.47254 * 299.99807 * 9 7 2 26 26 H 1.09003 * 109.47068 * 59.99505 * 10 9 7 27 27 H 1.09005 * 109.46860 * 300.00073 * 10 9 7 28 28 H 1.00907 * 110.99583 * 56.04728 * 11 10 9 29 29 H 1.09007 * 110.72450 * 337.48792 * 14 12 11 30 30 H 1.09004 * 110.72461 * 100.76716 * 14 12 11 31 31 H 1.09007 * 110.66620 * 278.98326 * 15 14 12 32 32 H 1.08993 * 110.81619 * 155.91514 * 15 14 12 33 33 H 1.09002 * 109.46809 * 67.39630 * 17 16 15 34 34 H 1.09000 * 109.47376 * 187.39850 * 17 16 15 35 35 H 1.09004 * 109.91646 * 265.97786 * 22 16 15 36 36 H 1.09001 * 110.08341 * 144.77463 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 6 4.0217 -2.6363 -0.0010 11 7 5.4906 -2.6364 -0.0022 12 6 6.0171 -4.0077 -0.0015 13 1 5.3512 -4.6698 -0.5549 14 6 6.1937 -4.5140 1.4485 15 6 7.5210 -5.3101 1.3784 16 7 8.3511 -4.5053 0.4459 17 6 9.4389 -5.3132 -0.1215 18 6 10.2219 -5.9814 1.0105 19 9 9.3645 -6.8054 1.7474 20 9 11.2583 -6.7502 0.4702 21 9 10.7591 -4.9987 1.8491 22 6 7.4302 -4.0380 -0.6129 23 1 -0.4851 0.8400 0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.8745 -0.6798 -0.8912 26 1 3.6580 -3.1504 -0.8907 27 1 3.6587 -3.1500 0.8893 28 1 5.8528 -2.1099 0.7788 29 1 6.2820 -3.6770 2.1413 30 1 5.3675 -5.1658 1.7328 31 1 7.3498 -6.3089 0.9767 32 1 7.9908 -5.3670 2.3602 33 1 9.0203 -6.0787 -0.7748 34 1 10.1070 -4.6711 -0.6956 35 1 7.4548 -4.7271 -1.4571 36 1 7.7141 -3.0383 -0.9415 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309583852.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:22 Heat of formation + Delta-G solvation = -147.036674 kcal Electronic energy + Delta-G solvation = -20439.162748 eV Core-core repulsion = 16736.111907 eV Total energy + Delta-G solvation = -3703.050841 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.40933 -47.98049 -47.79774 -39.40399 -35.81422 -33.21236 -31.85582 -29.75425 -28.83821 -26.87461 -23.78922 -23.42976 -21.60216 -20.77324 -20.24302 -18.87862 -18.72557 -17.63530 -16.82877 -16.05358 -15.80180 -14.98854 -14.80525 -14.60324 -14.47828 -14.30945 -14.25261 -14.03069 -13.97965 -13.70745 -13.44804 -12.79705 -12.59156 -12.26863 -12.10901 -12.04336 -11.65558 -11.37324 -11.33021 -11.01273 -10.80742 -10.20706 -9.80670 -9.73994 -9.24202 -8.89169 -8.54623 -7.98464 -6.05400 -4.04045 2.39782 3.26030 3.32728 3.39730 3.44483 3.47044 3.72875 4.10286 4.43139 4.45647 4.47700 4.64259 4.75730 4.94032 5.05578 5.19123 5.29326 5.39445 5.47515 5.70267 5.76665 5.88917 6.00345 6.14850 6.26654 6.43125 6.45506 6.74523 7.11282 7.36890 7.56665 7.72120 7.87602 8.51602 8.98377 9.56953 11.07893 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.050605 B = 0.003238 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.174900 B = 8645.847818 C = 8824.392227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.070 0.930 9 C -0.010 4.010 10 C 0.073 3.927 11 N -0.684 5.684 12 C 0.079 3.921 13 H 0.084 0.916 14 C -0.153 4.153 15 C 0.024 3.976 16 N -0.511 5.511 17 C 0.001 3.999 18 C 0.455 3.545 19 F -0.183 7.183 20 F -0.185 7.185 21 F -0.173 7.173 22 C 0.046 3.954 23 H 0.263 0.737 24 H 0.014 0.986 25 H 0.021 0.979 26 H 0.063 0.937 27 H 0.023 0.977 28 H 0.341 0.659 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.050 0.950 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.188 -13.107 0.857 24.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.711 3.289 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.088 0.912 9 C -0.048 4.048 10 C -0.055 4.055 11 N -0.315 5.315 12 C -0.033 4.033 13 H 0.102 0.898 14 C -0.193 4.193 15 C -0.104 4.104 16 N -0.236 5.236 17 C -0.129 4.129 18 C 0.400 3.600 19 F -0.164 7.164 20 F -0.166 7.166 21 F -0.154 7.154 22 C -0.082 4.082 23 H 0.073 0.927 24 H 0.032 0.968 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.041 0.959 28 H 0.160 0.840 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.140 0.860 35 H 0.068 0.932 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 21.330 -12.482 0.448 24.718 hybrid contribution -0.063 -0.253 0.659 0.709 sum 21.267 -12.735 1.107 24.813 Atomic orbital electron populations 1.69916 1.06347 1.26958 1.51088 1.25015 0.94735 0.99261 0.94446 0.86724 0.80286 0.83363 0.78571 1.20243 1.21509 1.18944 1.21063 0.89395 0.94496 1.51100 0.91157 1.19544 0.96661 0.91825 0.96759 1.21986 0.83904 1.00127 0.99446 1.60661 1.09951 1.10888 1.49985 1.22379 0.94836 0.91742 0.94296 0.89780 1.23305 0.96549 1.00784 0.98631 1.23635 0.93786 0.95315 0.97662 1.64952 1.09772 1.33252 1.15643 1.23490 0.96918 0.98980 0.93500 1.20490 0.78354 0.76980 0.84130 1.93185 1.69687 1.74139 1.79416 1.93189 1.60737 1.76865 1.85845 1.93220 1.86815 1.61774 1.73624 1.23039 0.91188 1.02089 0.91837 0.92710 0.96820 0.96092 0.91822 0.95863 0.84049 0.90263 0.90640 0.92781 0.89327 0.90122 0.86041 0.93165 0.88143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.83 9.66 -34.44 -0.33 -15.16 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.24 4.30 -27.89 -0.12 -0.36 16 10 C 0.07 1.42 5.47 -3.83 -0.02 1.40 16 11 N -0.68 -10.77 6.20 -105.29 -0.65 -11.43 16 12 C 0.08 1.00 3.31 -66.36 -0.22 0.78 16 13 H 0.08 1.07 7.82 -51.93 -0.41 0.66 16 14 C -0.15 -1.75 6.72 -24.87 -0.17 -1.92 16 15 C 0.02 0.24 4.70 -1.90 -0.01 0.23 16 16 N -0.51 -5.19 5.32 -230.45 -1.23 -6.41 16 17 C 0.00 0.01 5.15 -3.82 -0.02 -0.01 16 18 C 0.45 4.11 3.07 37.16 0.11 4.23 16 19 F -0.18 -1.78 13.56 2.25 0.03 -1.75 16 20 F -0.18 -1.67 17.32 2.25 0.04 -1.63 16 21 F -0.17 -1.85 17.24 2.25 0.04 -1.81 16 22 C 0.05 0.49 6.50 -2.75 -0.02 0.47 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 25 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 26 H 0.06 1.25 8.07 -51.93 -0.42 0.83 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.34 5.27 8.10 -39.29 -0.32 4.95 16 29 H 0.08 0.97 7.56 -51.92 -0.39 0.58 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.51 7.36 -51.93 -0.38 0.13 16 32 H 0.09 0.93 6.96 -51.93 -0.36 0.57 16 33 H 0.08 0.52 7.81 -51.93 -0.41 0.11 16 34 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.46 7.57 -51.93 -0.39 0.07 16 36 H 0.10 1.16 7.93 -51.93 -0.41 0.75 16 LS Contribution 300.84 15.07 4.53 4.53 Total: -1.00 -30.29 300.84 -7.13 -37.42 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -5.11 Total: -0.45 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -0.89 Total: -8.50 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: -1.11 Total: -44.97 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.11 Total: -5.19 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.29 -7.13 -37.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309583852.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.612 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds