Wall clock time and date at job start Mon Mar 30 2020 04:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99650 * 2 1 4 4 H 1.48503 * 109.47372 * 270.00301 * 3 2 1 5 5 H 1.48502 * 109.47298 * 30.00014 * 3 2 1 6 6 H 1.48494 * 109.47159 * 150.00089 * 3 2 1 7 7 C 1.37877 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99801 * 0.02562 * 7 2 1 9 9 C 1.50693 * 119.99717 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47240 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47769 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00347 * 179.97438 * 11 10 9 13 13 H 1.08998 * 110.35288 * 32.86255 * 12 11 10 14 14 C 1.54593 * 110.31124 * 270.71771 * 12 11 10 15 15 C 1.54933 * 102.92591 * 219.12802 * 14 12 11 16 16 N 1.48538 * 103.22579 * 37.41127 * 15 14 12 17 17 C 1.46897 * 111.00123 * 200.28130 * 16 15 14 18 18 C 1.53003 * 109.47395 * 307.40108 * 17 16 15 19 19 F 1.39902 * 109.47108 * 59.99628 * 18 17 16 20 20 F 1.39898 * 109.47180 * 180.02562 * 18 17 16 21 21 F 1.39906 * 109.46488 * 300.00139 * 18 17 16 22 22 C 1.47899 * 105.82096 * 320.79703 * 16 15 14 23 23 H 0.97004 * 120.00583 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47543 * 60.00104 * 9 7 2 25 25 H 1.09005 * 109.47254 * 299.99807 * 9 7 2 26 26 H 1.09003 * 109.47068 * 59.99505 * 10 9 7 27 27 H 1.09005 * 109.46860 * 300.00073 * 10 9 7 28 28 H 1.00907 * 110.99583 * 56.04728 * 11 10 9 29 29 H 1.09007 * 110.72450 * 337.48792 * 14 12 11 30 30 H 1.09004 * 110.72461 * 100.76716 * 14 12 11 31 31 H 1.09007 * 110.66620 * 278.98326 * 15 14 12 32 32 H 1.08993 * 110.81619 * 155.91514 * 15 14 12 33 33 H 1.09002 * 109.46809 * 67.39630 * 17 16 15 34 34 H 1.09000 * 109.47376 * 187.39850 * 17 16 15 35 35 H 1.09004 * 109.91646 * 265.97786 * 22 16 15 36 36 H 1.09001 * 110.08341 * 144.77463 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 6 4.0217 -2.6363 -0.0010 11 7 5.4906 -2.6364 -0.0022 12 6 6.0171 -4.0077 -0.0015 13 1 5.3512 -4.6698 -0.5549 14 6 6.1937 -4.5140 1.4485 15 6 7.5210 -5.3101 1.3784 16 7 8.3511 -4.5053 0.4459 17 6 9.4389 -5.3132 -0.1215 18 6 10.2219 -5.9814 1.0105 19 9 9.3645 -6.8054 1.7474 20 9 11.2583 -6.7502 0.4702 21 9 10.7591 -4.9987 1.8491 22 6 7.4302 -4.0380 -0.6129 23 1 -0.4851 0.8400 0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.8745 -0.6798 -0.8912 26 1 3.6580 -3.1504 -0.8907 27 1 3.6587 -3.1500 0.8893 28 1 5.8528 -2.1099 0.7788 29 1 6.2820 -3.6770 2.1413 30 1 5.3675 -5.1658 1.7328 31 1 7.3498 -6.3089 0.9767 32 1 7.9908 -5.3670 2.3602 33 1 9.0203 -6.0787 -0.7748 34 1 10.1070 -4.6711 -0.6956 35 1 7.4548 -4.7271 -1.4571 36 1 7.7141 -3.0383 -0.9415 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309583852.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:22 Heat of formation + Delta-G solvation = -168.995888 kcal Electronic energy + Delta-G solvation = -20440.114971 eV Core-core repulsion = 16736.111907 eV Total energy + Delta-G solvation = -3704.003064 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.12582 -48.68857 -48.54355 -40.29163 -37.10858 -35.03573 -33.25131 -31.19565 -29.72207 -28.04139 -25.48890 -24.18159 -22.41135 -22.33221 -21.46659 -19.59699 -19.44307 -18.96887 -18.36768 -17.00380 -16.70817 -16.28758 -16.10810 -15.56951 -15.48569 -15.26485 -15.02188 -15.00520 -14.89465 -14.74032 -14.65315 -14.51471 -13.66151 -13.50367 -13.22678 -13.03603 -12.95982 -12.74997 -12.50359 -12.25179 -11.96534 -11.75006 -11.70746 -11.47137 -11.39798 -10.76202 -9.62650 -9.27035 -8.29260 -6.33795 1.39059 1.40032 1.52776 1.72110 2.37760 2.53385 2.80137 3.06669 3.06749 3.27976 3.38229 3.64230 3.76357 4.11687 4.21641 4.28246 4.33520 4.43803 4.55113 4.56109 4.65426 4.81356 4.89979 4.96657 5.01873 5.13416 5.33638 5.50797 5.61146 5.65743 5.71891 6.19125 6.26814 6.53321 6.75348 7.31388 8.87405 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.050605 B = 0.003238 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.174900 B = 8645.847818 C = 8824.392227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.246 1.246 7 C -0.533 4.533 8 H 0.032 0.968 9 C -0.005 4.005 10 C 0.089 3.911 11 N -0.682 5.682 12 C 0.075 3.925 13 H 0.083 0.917 14 C -0.151 4.151 15 C 0.030 3.970 16 N -0.523 5.523 17 C 0.003 3.997 18 C 0.455 3.545 19 F -0.188 7.188 20 F -0.185 7.185 21 F -0.185 7.185 22 C 0.055 3.945 23 H 0.267 0.733 24 H 0.018 0.982 25 H 0.022 0.978 26 H 0.057 0.943 27 H 0.017 0.983 28 H 0.344 0.656 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.139 0.861 35 H 0.070 0.930 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.457 -12.966 0.421 26.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.170 1.170 7 C -0.572 4.572 8 H 0.050 0.950 9 C -0.043 4.043 10 C -0.040 4.040 11 N -0.313 5.313 12 C -0.036 4.036 13 H 0.101 0.899 14 C -0.191 4.191 15 C -0.097 4.097 16 N -0.248 5.248 17 C -0.126 4.126 18 C 0.400 3.600 19 F -0.170 7.170 20 F -0.166 7.166 21 F -0.166 7.166 22 C -0.073 4.073 23 H 0.075 0.925 24 H 0.036 0.964 25 H 0.040 0.960 26 H 0.075 0.925 27 H 0.035 0.965 28 H 0.163 0.837 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.157 0.843 35 H 0.089 0.911 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 23.628 -12.367 0.013 26.669 hybrid contribution -0.788 -0.405 0.806 1.198 sum 22.840 -12.773 0.818 26.181 Atomic orbital electron populations 1.70068 1.08339 1.28223 1.52638 1.26016 0.95614 1.03614 0.94025 0.85588 0.79395 0.78010 0.79185 1.19231 1.21107 1.16990 1.21428 0.92059 0.93160 1.50549 0.94980 1.19440 0.93415 0.94687 0.96757 1.21627 0.86354 0.97173 0.98885 1.60586 1.07317 1.13137 1.50238 1.22475 0.96000 0.89820 0.95272 0.89862 1.23239 0.97530 1.00682 0.97621 1.23564 0.92863 0.95518 0.97773 1.64897 1.10046 1.34135 1.15744 1.23594 0.96321 0.99614 0.93087 1.20683 0.78349 0.76749 0.84178 1.93175 1.69806 1.74310 1.79679 1.93190 1.60801 1.76858 1.85758 1.93198 1.87042 1.62261 1.74139 1.22895 0.89666 1.02396 0.92316 0.92465 0.96354 0.95951 0.92492 0.96485 0.83734 0.91180 0.90620 0.91759 0.89673 0.88044 0.84324 0.91132 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 2 C 0.00 0.24 5.47 84.65 0.46 0.70 16 3 Si 0.95 44.55 27.47 68.60 1.88 46.44 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.25 -10.68 6.54 99.48 0.65 -10.02 16 7 C -0.53 -30.82 9.66 25.60 0.25 -30.57 16 8 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 9 C -0.01 -0.24 4.30 29.85 0.13 -0.11 16 10 C 0.09 3.38 5.47 86.30 0.47 3.85 16 11 N -0.68 -20.42 6.20 -487.04 -3.02 -23.44 16 12 C 0.08 1.76 3.31 45.79 0.15 1.91 16 13 H 0.08 1.97 7.82 -2.39 -0.02 1.95 16 14 C -0.15 -3.25 6.72 31.80 0.21 -3.03 16 15 C 0.03 0.56 4.70 86.65 0.41 0.96 16 16 N -0.52 -9.26 5.32 -883.00 -4.70 -13.95 16 17 C 0.00 0.04 5.15 86.30 0.44 0.49 16 18 C 0.45 7.25 3.07 71.98 0.22 7.47 16 19 F -0.19 -3.31 13.56 44.97 0.61 -2.70 16 20 F -0.18 -2.95 17.32 44.97 0.78 -2.17 16 21 F -0.18 -3.66 17.24 44.97 0.78 -2.89 16 22 C 0.05 1.01 6.50 86.45 0.56 1.58 16 23 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 24 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 25 H 0.02 1.03 7.57 -2.38 -0.02 1.01 16 26 H 0.06 2.23 8.07 -2.39 -0.02 2.22 16 27 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.34 10.04 8.10 -89.69 -0.73 9.32 16 29 H 0.07 1.64 7.56 -2.38 -0.02 1.62 16 30 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.06 1.05 7.36 -2.38 -0.02 1.03 16 32 H 0.08 1.64 6.96 -2.39 -0.02 1.62 16 33 H 0.10 0.91 7.81 -2.39 -0.02 0.89 16 34 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 1.04 7.57 -2.39 -0.02 1.02 16 36 H 0.09 1.92 7.93 -2.39 -0.02 1.90 16 Total: -1.00 -65.29 300.84 0.24 -65.05 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.31 Total: 10.11 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: 3.31 Total: -16.76 kcal Atomic # 7 Polarization: -89.65 SS G_CDS: -7.42 Total: -97.07 kcal Atomic # 9 Polarization: -9.93 SS G_CDS: 2.16 Total: -7.76 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.44 kcal Total: -65.29 0.24 -65.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309583852.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.947 kcal (2) G-P(sol) polarization free energy of solvation -65.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds