Wall clock time and date at job start Mon Mar 30 2020 04:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35764 * 116.99803 * 2 1 4 4 C 1.35948 * 126.19407 * 96.98448 * 3 2 1 5 5 C 1.50692 * 126.08552 * 0.02562 * 4 3 2 6 6 H 1.09001 * 109.89996 * 164.62848 * 5 4 3 7 7 C 1.54382 * 109.83031 * 285.56656 * 5 4 3 8 8 C 1.55568 * 102.27628 * 140.86598 * 7 5 4 9 9 C 1.54938 * 100.82603 * 325.88220 * 8 7 5 10 10 H 1.08998 * 110.31092 * 277.47500 * 9 8 7 11 11 C 1.50701 * 110.31020 * 155.40493 * 9 8 7 12 12 H 1.08001 * 119.99932 * 1.39134 * 11 9 8 13 13 C 1.37875 * 120.00141 * 181.39129 * 11 9 8 14 14 N 1.31514 * 120.00035 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99992 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47382 * 89.99899 * 15 13 11 17 17 H 1.48499 * 109.46903 * 209.99850 * 15 13 11 18 18 H 1.48505 * 109.46956 * 329.99570 * 15 13 11 19 19 O 1.43238 * 109.82933 * 43.69636 * 5 4 3 20 20 C 1.39822 * 107.83073 * 179.75289 * 4 3 2 21 21 C 1.50700 * 125.85993 * 180.19391 * 20 4 3 22 22 N 1.30832 * 108.28579 * 0.22722 * 20 4 3 23 23 N 1.35136 * 126.18880 * 277.12687 * 3 2 1 24 24 C 1.46494 * 126.04062 * 0.05423 * 23 3 2 25 25 H 1.09001 * 109.46738 * 184.91721 * 1 2 3 26 26 H 1.09007 * 109.47636 * 304.91515 * 1 2 3 27 27 H 1.09000 * 109.47637 * 64.91712 * 1 2 3 28 28 H 1.09003 * 110.84979 * 259.05948 * 7 5 4 29 29 H 1.09003 * 110.85048 * 22.47531 * 7 5 4 30 30 H 1.09000 * 111.22450 * 207.98137 * 8 7 5 31 31 H 1.08999 * 111.13092 * 83.74372 * 8 7 5 32 32 H 0.96999 * 119.99993 * 180.02562 * 14 13 11 33 33 H 1.09001 * 109.47246 * 93.66142 * 21 20 4 34 34 H 1.08992 * 109.47359 * 213.66984 * 21 20 4 35 35 H 1.09005 * 109.46743 * 333.66699 * 21 20 4 36 36 H 1.09000 * 109.47255 * 275.69405 * 24 23 3 37 37 H 1.09004 * 109.46785 * 35.69239 * 24 23 3 38 38 H 1.09006 * 109.47258 * 155.68855 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2097 0.0000 4 6 2.5286 1.8644 1.0890 5 6 2.4763 1.3763 2.5137 6 1 3.1635 1.9560 3.1300 7 6 1.0394 1.5122 3.0616 8 6 0.8817 0.2130 3.9025 9 6 1.7240 -0.7807 3.0635 10 1 1.1329 -1.1731 2.2361 11 6 2.2206 -1.9082 3.9315 12 1 1.9518 -1.9436 4.9769 13 6 3.0180 -2.8945 3.3909 14 7 3.3450 -2.8517 2.1178 15 14 3.6329 -4.2924 4.4666 16 1 2.6557 -5.4100 4.4327 17 1 4.9454 -4.7670 3.9591 18 1 3.7868 -3.8115 5.8632 19 8 2.8297 -0.0109 2.5653 20 6 3.0883 3.0686 0.6511 21 6 3.7442 4.1065 1.5248 22 7 2.9443 3.1399 -0.6474 23 7 2.2869 1.9821 -1.0822 24 6 1.9287 1.6628 -2.4663 25 1 -0.3633 -1.0239 0.0881 26 1 -0.3634 0.5882 0.8427 27 1 -0.3634 0.4356 -0.9307 28 1 0.9469 2.3962 3.6926 29 1 0.3150 1.5413 2.2476 30 1 -0.1610 -0.1006 3.9525 31 1 1.3008 0.3378 4.9009 32 1 3.9057 -3.5458 1.7374 33 1 4.8190 3.9276 1.5572 34 1 3.5531 5.0987 1.1163 35 1 3.3349 4.0438 2.5332 36 1 2.7029 1.0340 -2.9062 37 1 0.9769 1.1317 -2.4820 38 1 1.8397 2.5850 -3.0407 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310095738.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:38 Heat of formation + Delta-G solvation = 1.826001 kcal Electronic energy + Delta-G solvation = -21535.057144 eV Core-core repulsion = 18380.318213 eV Total energy + Delta-G solvation = -3154.738931 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.11775 -37.89464 -37.43601 -33.68992 -32.47086 -30.75227 -30.16477 -29.42808 -27.79176 -26.46126 -25.32541 -23.91418 -21.44702 -20.21510 -19.89825 -19.28729 -17.12453 -16.47626 -15.91509 -15.72772 -14.82488 -14.56859 -14.40961 -14.26839 -13.97090 -13.39495 -13.10383 -13.04122 -12.53078 -12.42719 -12.21012 -11.90511 -11.85405 -11.62157 -11.37436 -11.04484 -10.86351 -10.51800 -10.33836 -10.24429 -10.12632 -9.64526 -9.62180 -8.98376 -8.69558 -8.47319 -7.96474 -7.57749 -5.86963 -4.01318 2.02369 2.64635 3.00209 3.36236 3.43396 3.46424 4.06193 4.50937 4.68510 5.15649 5.24318 5.27567 5.34103 5.39655 5.42215 5.52014 5.58412 5.63966 5.67848 5.82754 5.84632 5.97307 6.00948 6.06240 6.25588 6.38041 6.52686 6.60710 6.68005 6.79147 6.85691 6.95489 7.07795 7.74389 7.97787 8.00938 8.05013 8.40344 8.79417 9.18963 9.68949 11.18588 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.022443 B = 0.006702 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.281082 B = 4176.672879 C = 4511.765586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.276 6.276 3 C 0.276 3.724 4 C -0.232 4.232 5 C 0.151 3.849 6 H 0.066 0.934 7 C -0.146 4.146 8 C -0.150 4.150 9 C 0.215 3.785 10 H 0.032 0.968 11 C -0.538 4.538 12 H 0.060 0.940 13 C 0.079 3.921 14 N -0.853 5.853 15 Si 0.886 3.114 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 O -0.342 6.342 20 C 0.084 3.916 21 C -0.070 4.070 22 N -0.295 5.295 23 N -0.392 5.392 24 C 0.105 3.895 25 H 0.102 0.898 26 H 0.052 0.948 27 H 0.035 0.965 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.258 0.742 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.612 10.574 -5.312 13.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.184 6.184 3 C 0.108 3.892 4 C -0.244 4.244 5 C 0.091 3.909 6 H 0.084 0.916 7 C -0.184 4.184 8 C -0.188 4.188 9 C 0.160 3.840 10 H 0.049 0.951 11 C -0.575 4.575 12 H 0.078 0.922 13 C -0.127 4.127 14 N -0.489 5.489 15 Si 0.713 3.287 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 O -0.261 6.261 20 C -0.081 4.081 21 C -0.129 4.129 22 N -0.121 5.121 23 N -0.184 5.184 24 C -0.037 4.037 25 H 0.121 0.879 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.111 10.760 -6.681 13.658 hybrid contribution -0.147 -1.173 0.953 1.518 sum -5.258 9.586 -5.729 12.343 Atomic orbital electron populations 1.23117 0.79358 1.04096 0.99761 1.86428 1.19283 1.20029 1.92679 1.18858 0.98586 0.85297 0.86411 1.20370 1.11269 0.96083 0.96717 1.20629 0.94139 0.88252 0.87890 0.91650 1.23227 0.97273 0.98790 0.99123 1.23424 1.00453 0.95136 0.99788 1.20486 0.84226 0.88087 0.91219 0.95086 1.21113 1.33969 1.06379 0.96053 0.92204 1.25062 0.95415 0.97461 0.94746 1.70088 1.34594 1.32695 1.11497 0.86725 0.78296 0.82601 0.81056 1.20718 1.21226 1.19841 1.88901 1.39000 1.12144 1.86068 1.21949 0.98512 0.96044 0.91603 1.20161 1.00137 0.95124 0.97448 1.77241 1.19471 1.03087 1.12333 1.48824 1.47561 1.15208 1.06818 1.21734 1.01062 1.02069 0.78803 0.87942 0.92928 0.94602 0.91953 0.92394 0.92317 0.91619 0.93201 0.90485 0.91194 0.90339 0.90874 0.90381 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.63 101.05 1.07 1.58 16 2 O -0.28 -5.72 9.27 -19.64 -0.18 -5.91 16 3 C 0.28 5.56 6.77 -16.92 -0.11 5.44 16 4 C -0.23 -4.71 4.99 -104.86 -0.52 -5.23 16 5 C 0.15 3.21 3.79 -27.16 -0.10 3.10 16 6 H 0.07 1.30 7.20 -51.93 -0.37 0.92 16 7 C -0.15 -2.69 6.54 -24.64 -0.16 -2.85 16 8 C -0.15 -3.13 6.55 -24.34 -0.16 -3.29 16 9 C 0.22 5.57 3.10 -26.86 -0.08 5.49 16 10 H 0.03 0.86 6.95 -51.93 -0.36 0.50 16 11 C -0.54 -15.30 8.80 -34.44 -0.30 -15.60 16 12 H 0.06 1.65 7.76 -52.49 -0.41 1.24 16 13 C 0.08 2.29 5.42 -17.82 -0.10 2.20 16 14 N -0.85 -25.91 12.99 55.43 0.72 -25.19 16 15 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 O -0.34 -9.19 9.77 -35.87 -0.35 -9.54 16 20 C 0.08 1.50 7.21 -82.43 -0.59 0.91 16 21 C -0.07 -0.93 10.12 36.01 0.36 -0.57 16 22 N -0.29 -5.36 12.57 33.66 0.42 -4.94 16 23 N -0.39 -6.94 4.02 -68.28 -0.27 -7.21 16 24 C 0.11 1.33 11.42 59.84 0.68 2.01 16 25 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 26 H 0.05 0.81 5.99 -51.92 -0.31 0.50 16 27 H 0.04 0.45 7.26 -51.93 -0.38 0.07 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.02 5.66 -51.93 -0.29 0.73 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.36 8.04 -51.93 -0.42 0.94 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.95 7.37 -51.93 -0.38 0.56 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.85 7.26 -51.93 -0.38 0.47 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 313.60 15.07 4.73 4.73 Total: -1.00 -34.71 313.60 -5.37 -40.08 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -5.39 Total: -1.91 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -0.02 Total: -6.81 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.87 Total: -37.34 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.53 Total: -15.45 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.71 -5.37 -40.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310095738.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.906 kcal (2) G-P(sol) polarization free energy of solvation -34.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds