Wall clock time and date at job start Mon Mar 30 2020 04:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35764 * 116.99803 * 2 1 4 4 C 1.35948 * 126.19407 * 96.98448 * 3 2 1 5 5 C 1.50692 * 126.08552 * 0.02562 * 4 3 2 6 6 H 1.09001 * 109.89996 * 164.62848 * 5 4 3 7 7 C 1.54382 * 109.83031 * 285.56656 * 5 4 3 8 8 C 1.55568 * 102.27628 * 140.86598 * 7 5 4 9 9 C 1.54938 * 100.82603 * 325.88220 * 8 7 5 10 10 H 1.08998 * 110.31092 * 277.47500 * 9 8 7 11 11 C 1.50701 * 110.31020 * 155.40493 * 9 8 7 12 12 H 1.08001 * 119.99932 * 1.39134 * 11 9 8 13 13 C 1.37875 * 120.00141 * 181.39129 * 11 9 8 14 14 N 1.31514 * 120.00035 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99992 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47382 * 89.99899 * 15 13 11 17 17 H 1.48499 * 109.46903 * 209.99850 * 15 13 11 18 18 H 1.48505 * 109.46956 * 329.99570 * 15 13 11 19 19 O 1.43238 * 109.82933 * 43.69636 * 5 4 3 20 20 C 1.39822 * 107.83073 * 179.75289 * 4 3 2 21 21 C 1.50700 * 125.85993 * 180.19391 * 20 4 3 22 22 N 1.30832 * 108.28579 * 0.22722 * 20 4 3 23 23 N 1.35136 * 126.18880 * 277.12687 * 3 2 1 24 24 C 1.46494 * 126.04062 * 0.05423 * 23 3 2 25 25 H 1.09001 * 109.46738 * 184.91721 * 1 2 3 26 26 H 1.09007 * 109.47636 * 304.91515 * 1 2 3 27 27 H 1.09000 * 109.47637 * 64.91712 * 1 2 3 28 28 H 1.09003 * 110.84979 * 259.05948 * 7 5 4 29 29 H 1.09003 * 110.85048 * 22.47531 * 7 5 4 30 30 H 1.09000 * 111.22450 * 207.98137 * 8 7 5 31 31 H 1.08999 * 111.13092 * 83.74372 * 8 7 5 32 32 H 0.96999 * 119.99993 * 180.02562 * 14 13 11 33 33 H 1.09001 * 109.47246 * 93.66142 * 21 20 4 34 34 H 1.08992 * 109.47359 * 213.66984 * 21 20 4 35 35 H 1.09005 * 109.46743 * 333.66699 * 21 20 4 36 36 H 1.09000 * 109.47255 * 275.69405 * 24 23 3 37 37 H 1.09004 * 109.46785 * 35.69239 * 24 23 3 38 38 H 1.09006 * 109.47258 * 155.68855 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2097 0.0000 4 6 2.5286 1.8644 1.0890 5 6 2.4763 1.3763 2.5137 6 1 3.1635 1.9560 3.1300 7 6 1.0394 1.5122 3.0616 8 6 0.8817 0.2130 3.9025 9 6 1.7240 -0.7807 3.0635 10 1 1.1329 -1.1731 2.2361 11 6 2.2206 -1.9082 3.9315 12 1 1.9518 -1.9436 4.9769 13 6 3.0180 -2.8945 3.3909 14 7 3.3450 -2.8517 2.1178 15 14 3.6329 -4.2924 4.4666 16 1 2.6557 -5.4100 4.4327 17 1 4.9454 -4.7670 3.9591 18 1 3.7868 -3.8115 5.8632 19 8 2.8297 -0.0109 2.5653 20 6 3.0883 3.0686 0.6511 21 6 3.7442 4.1065 1.5248 22 7 2.9443 3.1399 -0.6474 23 7 2.2869 1.9821 -1.0822 24 6 1.9287 1.6628 -2.4663 25 1 -0.3633 -1.0239 0.0881 26 1 -0.3634 0.5882 0.8427 27 1 -0.3634 0.4356 -0.9307 28 1 0.9469 2.3962 3.6926 29 1 0.3150 1.5413 2.2476 30 1 -0.1610 -0.1006 3.9525 31 1 1.3008 0.3378 4.9009 32 1 3.9057 -3.5458 1.7374 33 1 4.8190 3.9276 1.5572 34 1 3.5531 5.0987 1.1163 35 1 3.3349 4.0438 2.5332 36 1 2.7029 1.0340 -2.9062 37 1 0.9769 1.1317 -2.4820 38 1 1.8397 2.5850 -3.0407 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310095738.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:37 Heat of formation + Delta-G solvation = -22.797224 kcal Electronic energy + Delta-G solvation = -21536.124887 eV Core-core repulsion = 18380.318213 eV Total energy + Delta-G solvation = -3155.806674 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.49467 -39.60037 -38.90412 -35.07848 -34.45968 -32.48845 -31.71344 -30.59599 -29.35251 -27.92455 -26.74502 -25.56128 -23.02746 -22.00306 -21.29982 -20.73740 -18.56270 -18.42380 -17.34023 -17.21927 -16.66213 -16.23978 -15.90831 -15.67071 -15.51474 -14.77706 -14.38015 -14.23658 -14.18013 -13.72924 -13.63206 -13.45484 -13.22511 -13.02125 -12.79234 -12.64262 -12.46023 -12.36743 -12.11940 -11.96776 -11.77938 -11.36147 -11.02520 -10.87179 -10.62647 -10.00140 -9.75703 -9.16682 -8.03795 -6.25458 0.64550 1.39139 1.41656 1.43744 1.53899 1.62399 2.45545 2.73769 3.18403 3.49820 3.90867 3.97188 4.04495 4.06069 4.19711 4.29081 4.31534 4.36734 4.44572 4.54722 4.55814 4.63527 4.83310 4.85380 4.88433 5.01470 5.04094 5.06977 5.18974 5.22277 5.35033 5.45953 5.68325 5.76109 5.90538 6.31299 6.60217 6.69290 6.73385 7.23655 7.50887 9.01597 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.022443 B = 0.006702 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.281082 B = 4176.672879 C = 4511.765586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.310 6.310 3 C 0.262 3.738 4 C -0.262 4.262 5 C 0.143 3.857 6 H 0.075 0.925 7 C -0.130 4.130 8 C -0.142 4.142 9 C 0.211 3.789 10 H 0.004 0.996 11 C -0.558 4.558 12 H 0.062 0.938 13 C 0.025 3.975 14 N -0.893 5.893 15 Si 0.954 3.046 16 H -0.270 1.270 17 H -0.288 1.288 18 H -0.265 1.265 19 O -0.382 6.382 20 C 0.083 3.917 21 C -0.069 4.069 22 N -0.305 5.305 23 N -0.392 5.392 24 C 0.095 3.905 25 H 0.103 0.897 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.256 0.744 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.234 11.822 -4.874 14.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.220 6.220 3 C 0.094 3.906 4 C -0.274 4.274 5 C 0.083 3.917 6 H 0.093 0.907 7 C -0.168 4.168 8 C -0.180 4.180 9 C 0.156 3.844 10 H 0.022 0.978 11 C -0.595 4.595 12 H 0.080 0.920 13 C -0.178 4.178 14 N -0.530 5.530 15 Si 0.779 3.221 16 H -0.195 1.195 17 H -0.214 1.214 18 H -0.190 1.190 19 O -0.302 6.302 20 C -0.082 4.082 21 C -0.128 4.128 22 N -0.132 5.132 23 N -0.185 5.185 24 C -0.045 4.045 25 H 0.121 0.879 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.116 0.884 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.754 12.023 -6.248 14.720 hybrid contribution 0.021 -1.536 0.751 1.710 sum -5.734 10.486 -5.497 13.155 Atomic orbital electron populations 1.23280 0.77214 1.04538 1.01502 1.86350 1.21669 1.20928 1.93008 1.19054 0.98846 0.85197 0.87497 1.20462 1.13022 0.97541 0.96423 1.20845 0.95959 0.85657 0.89202 0.90720 1.23147 0.95650 0.98792 0.99192 1.23296 1.00423 0.95091 0.99205 1.20330 0.84483 0.88885 0.90723 0.97822 1.21597 1.33760 1.07669 0.96506 0.92000 1.25906 0.95710 1.00185 0.95965 1.70255 1.35646 1.33688 1.13388 0.85646 0.77606 0.79497 0.79346 1.19513 1.21386 1.18961 1.88794 1.39827 1.15143 1.86448 1.22520 0.97829 0.96100 0.91781 1.20326 1.00101 0.94934 0.97421 1.77202 1.19818 1.03543 1.12593 1.49137 1.46904 1.14564 1.07864 1.22096 1.01946 1.03672 0.76804 0.87908 0.92913 0.91313 0.88426 0.91824 0.90612 0.91590 0.93527 0.89894 0.88999 0.89069 0.90663 0.88670 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 10.63 113.37 1.21 2.11 16 2 O -0.31 -13.08 9.27 -90.30 -0.84 -13.92 16 3 C 0.26 10.55 6.77 83.65 0.57 11.12 16 4 C -0.26 -10.51 4.99 -20.02 -0.10 -10.61 16 5 C 0.14 5.98 3.79 30.31 0.11 6.10 16 6 H 0.08 2.90 7.20 -2.39 -0.02 2.88 16 7 C -0.13 -4.56 6.54 31.95 0.21 -4.35 16 8 C -0.14 -5.79 6.55 32.14 0.21 -5.58 16 9 C 0.21 11.12 3.10 30.51 0.09 11.22 16 10 H 0.00 0.24 6.95 -2.39 -0.02 0.22 16 11 C -0.56 -32.17 8.80 25.60 0.23 -31.94 16 12 H 0.06 3.42 7.76 -2.91 -0.02 3.40 16 13 C 0.02 1.44 5.42 84.65 0.46 1.90 16 14 N -0.89 -55.80 12.99 21.45 0.28 -55.52 16 15 Si 0.95 45.17 29.54 68.60 2.03 47.19 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 O -0.38 -20.94 9.77 -148.37 -1.45 -22.39 16 20 C 0.08 2.85 7.21 43.09 0.31 3.16 16 21 C -0.07 -1.69 10.12 71.24 0.72 -0.97 16 22 N -0.30 -10.69 12.57 -47.42 -0.60 -11.28 16 23 N -0.39 -13.54 4.02 -481.25 -1.93 -15.47 16 24 C 0.09 2.25 11.42 127.77 1.46 3.71 16 25 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 26 H 0.05 1.60 5.99 -2.38 -0.01 1.58 16 27 H 0.07 1.62 7.26 -2.39 -0.02 1.60 16 28 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.06 2.15 5.66 -2.39 -0.01 2.13 16 30 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.07 2.65 8.04 -2.39 -0.02 2.63 16 32 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.09 1.96 7.37 -2.38 -0.02 1.95 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.09 1.90 7.26 -2.38 -0.02 1.88 16 38 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -76.51 313.60 4.02 -72.48 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.06 Total: 13.04 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 5.48 Total: -14.13 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -2.25 Total: -82.28 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -2.29 Total: -36.31 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -76.51 4.02 -72.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310095738.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.688 kcal (2) G-P(sol) polarization free energy of solvation -76.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds