Wall clock time and date at job start Mon Mar 30 2020 04:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35761 * 117.00387 * 2 1 4 4 C 1.35945 * 126.19262 * 94.64512 * 3 2 1 5 5 C 1.50696 * 126.08325 * 0.02562 * 4 3 2 6 6 H 1.09005 * 110.41839 * 345.85140 * 5 4 3 7 7 C 1.54468 * 110.37472 * 108.16383 * 5 4 3 8 8 C 1.54513 * 104.06681 * 142.80872 * 7 5 4 9 9 C 1.54477 * 104.05968 * 0.02562 * 8 7 5 10 10 H 1.09005 * 110.37123 * 94.85372 * 9 8 7 11 11 C 1.50703 * 110.37222 * 217.18725 * 9 8 7 12 12 H 1.08001 * 119.99503 * 356.83466 * 11 9 8 13 13 C 1.37877 * 119.99990 * 176.83668 * 11 9 8 14 14 N 1.31515 * 119.99974 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 120.00114 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.46840 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47278 * 119.99602 * 15 13 11 18 18 H 1.48496 * 109.47240 * 239.99858 * 15 13 11 19 19 O 1.44421 * 104.80487 * 336.01946 * 9 8 7 20 20 C 1.39821 * 107.83554 * 180.26960 * 4 3 2 21 21 C 1.50702 * 125.86168 * 179.76436 * 20 4 3 22 22 N 1.30839 * 108.28238 * 359.58864 * 20 4 3 23 23 N 1.35136 * 126.19268 * 274.67931 * 3 2 1 24 24 C 1.46496 * 126.03494 * 359.94906 * 23 3 2 25 25 H 1.09000 * 109.46863 * 304.66615 * 1 2 3 26 26 H 1.09006 * 109.47194 * 64.65667 * 1 2 3 27 27 H 1.08994 * 109.47162 * 184.65761 * 1 2 3 28 28 H 1.09004 * 110.51144 * 24.16491 * 7 5 4 29 29 H 1.09004 * 110.63059 * 261.51138 * 7 5 4 30 30 H 1.08997 * 110.51231 * 241.35220 * 8 7 5 31 31 H 1.08999 * 110.62672 * 118.70184 * 8 7 5 32 32 H 0.96998 * 120.00033 * 179.97438 * 14 13 11 33 33 H 1.08998 * 109.46960 * 89.99128 * 21 20 4 34 34 H 1.08995 * 109.47229 * 209.99694 * 21 20 4 35 35 H 1.09005 * 109.46680 * 329.99502 * 21 20 4 36 36 H 1.09004 * 109.47336 * 94.17937 * 24 23 3 37 37 H 1.09007 * 109.46992 * 214.17309 * 24 23 3 38 38 H 1.08996 * 109.47622 * 334.17420 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 2.4891 1.8845 1.0935 5 6 2.3848 1.4227 2.5242 6 1 1.6868 0.5894 2.6049 7 6 3.7747 1.0138 3.0600 8 6 3.7657 1.4903 4.5298 9 6 2.3711 2.1301 4.7083 10 1 1.6714 1.4051 5.1241 11 6 2.4606 3.3438 5.5971 12 1 3.4044 3.6156 6.0464 13 6 1.3377 4.1072 5.8367 14 7 0.1886 3.7764 5.2892 15 14 1.4488 5.6120 6.9378 16 1 2.8429 5.7665 7.4257 17 1 1.0569 6.8193 6.1672 18 1 0.5349 5.4461 8.0965 19 8 1.9668 2.5118 3.3754 20 6 3.0543 3.0859 0.6551 21 6 3.6666 4.1460 1.5340 22 7 2.9638 3.1301 -0.6494 23 7 2.3285 1.9610 -1.0870 24 6 2.0250 1.6138 -2.4774 25 1 -0.3633 0.5845 0.8452 26 1 -0.3634 0.4399 -0.9288 27 1 -0.3633 -1.0242 0.0834 28 1 4.5631 1.5171 2.5002 29 1 3.9028 -0.0675 3.0098 30 1 4.5495 2.2290 4.6966 31 1 3.8877 0.6457 5.2079 32 1 -0.6015 4.3132 5.4581 33 1 4.7292 3.9410 1.6639 34 1 3.5393 5.1228 1.0674 35 1 3.1740 4.1408 2.5064 36 1 1.0699 2.0552 -2.7621 37 1 2.8109 1.9980 -3.1277 38 1 1.9684 0.5299 -2.5773 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310095740.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:45 Heat of formation + Delta-G solvation = -2.255906 kcal Electronic energy + Delta-G solvation = -21184.218584 eV Core-core repulsion = 18029.302648 eV Total energy + Delta-G solvation = -3154.915936 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.19410 -37.96690 -37.77924 -33.65148 -32.51298 -30.78295 -30.29721 -29.18587 -27.88846 -26.68652 -25.37617 -23.85313 -21.43430 -20.52421 -19.86577 -19.21590 -17.31988 -16.55653 -16.15339 -15.69688 -14.88223 -14.80478 -14.51428 -14.34096 -13.74517 -13.48208 -13.16448 -13.00719 -12.59246 -12.48125 -12.09834 -12.02912 -11.62845 -11.55250 -11.47681 -11.03460 -10.90669 -10.61856 -10.43482 -10.24918 -9.93800 -9.92104 -9.48894 -9.06460 -8.73312 -8.56576 -8.04889 -7.85219 -5.97877 -4.09828 1.81878 2.56075 3.01132 3.32586 3.40841 3.44123 3.80663 4.45187 4.60399 5.11354 5.14053 5.15828 5.30826 5.33013 5.37411 5.54403 5.58455 5.64045 5.76731 5.79785 5.94381 5.99263 6.26128 6.33986 6.40973 6.48959 6.52566 6.67996 6.75591 6.77451 6.91941 6.97594 7.24631 7.56943 7.68258 7.92448 8.02567 8.28322 8.59735 9.02379 9.60385 11.09764 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.024440 B = 0.005892 C = 0.005724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.370707 B = 4751.273000 C = 4890.252602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.309 6.309 3 C 0.242 3.758 4 C -0.203 4.203 5 C 0.144 3.856 6 H 0.052 0.948 7 C -0.141 4.141 8 C -0.146 4.146 9 C 0.205 3.795 10 H 0.023 0.977 11 C -0.527 4.527 12 H 0.065 0.935 13 C 0.077 3.923 14 N -0.862 5.862 15 Si 0.889 3.111 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.284 1.284 19 O -0.338 6.338 20 C 0.116 3.884 21 C -0.083 4.083 22 N -0.293 5.293 23 N -0.391 5.391 24 C 0.105 3.895 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.259 0.741 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.115 0.885 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.246 -6.266 -11.771 13.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.219 6.219 3 C 0.075 3.925 4 C -0.215 4.215 5 C 0.084 3.916 6 H 0.070 0.930 7 C -0.179 4.179 8 C -0.184 4.184 9 C 0.149 3.851 10 H 0.041 0.959 11 C -0.564 4.564 12 H 0.083 0.917 13 C -0.128 4.128 14 N -0.499 5.499 15 Si 0.716 3.284 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.210 1.210 19 O -0.257 6.257 20 C -0.049 4.049 21 C -0.142 4.142 22 N -0.119 5.119 23 N -0.183 5.183 24 C -0.037 4.037 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.118 0.882 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.134 0.866 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.198 -5.667 -13.014 14.364 hybrid contribution -0.439 0.115 0.961 1.063 sum 1.760 -5.551 -12.053 13.386 Atomic orbital electron populations 1.23143 0.78195 1.03758 1.01413 1.86077 1.20688 1.21867 1.93310 1.18644 1.00169 0.86534 0.87135 1.19704 1.10697 0.96474 0.94583 1.20765 0.93950 0.91162 0.85697 0.92977 1.22898 0.97922 0.99771 0.97306 1.23048 1.01800 0.99619 0.93942 1.20510 0.87956 0.95108 0.81479 0.95902 1.21066 0.95496 1.11962 1.27886 0.91704 1.25070 0.95369 0.97403 0.94997 1.70052 0.99576 1.38336 1.41909 0.86600 0.78225 0.83160 0.80366 1.19580 1.20879 1.21037 1.89497 1.80160 1.37777 1.18311 1.22093 0.96631 0.95505 0.90704 1.20453 1.00039 0.93742 0.99918 1.77379 1.20303 1.01432 1.12773 1.48711 1.48391 1.15131 1.06026 1.21716 1.01983 1.01436 0.78579 0.91993 0.93817 0.88177 0.91965 0.92474 0.91699 0.92880 0.93088 0.91241 0.91815 0.86617 0.91356 0.89562 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.13 101.05 1.12 1.50 16 2 O -0.31 -4.88 10.29 -18.99 -0.20 -5.08 16 3 C 0.24 4.33 6.93 -16.92 -0.12 4.22 16 4 C -0.20 -4.07 5.05 -104.85 -0.53 -4.60 16 5 C 0.14 3.07 3.58 -27.11 -0.10 2.98 16 6 H 0.05 1.11 8.03 -51.93 -0.42 0.70 16 7 C -0.14 -2.69 6.62 -25.17 -0.17 -2.86 16 8 C -0.15 -3.05 6.61 -25.16 -0.17 -3.21 16 9 C 0.20 5.22 3.11 -27.11 -0.08 5.13 16 10 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 11 C -0.53 -14.44 8.78 -34.44 -0.30 -14.74 16 12 H 0.06 1.73 7.59 -52.49 -0.40 1.33 16 13 C 0.08 2.16 5.42 -17.82 -0.10 2.06 16 14 N -0.86 -25.33 12.94 55.43 0.72 -24.61 16 15 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 O -0.34 -8.63 8.45 -35.23 -0.30 -8.93 16 20 C 0.12 2.29 7.11 -82.42 -0.59 1.71 16 21 C -0.08 -1.54 10.24 36.01 0.37 -1.17 16 22 N -0.29 -5.51 12.57 33.66 0.42 -5.09 16 23 N -0.39 -6.48 4.02 -68.28 -0.27 -6.75 16 24 C 0.10 1.15 11.44 59.84 0.68 1.83 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 1.15 7.82 -51.93 -0.41 0.74 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.34 7.73 -51.93 -0.40 0.94 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.12 2.52 6.09 -51.93 -0.32 2.20 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.83 8.14 -51.92 -0.42 0.40 16 38 H 0.08 0.78 8.05 -51.93 -0.42 0.36 16 LS Contribution 320.19 15.07 4.83 4.83 Total: -1.00 -32.19 320.19 -5.51 -37.70 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.72 Total: -1.00 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 0.03 Total: -7.17 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.87 Total: -36.46 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.49 Total: -14.00 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.19 -5.51 -37.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310095740.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.441 kcal (2) G-P(sol) polarization free energy of solvation -32.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds