Wall clock time and date at job start Mon Mar 30 2020 04:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35761 * 117.00387 * 2 1 4 4 C 1.35945 * 126.19262 * 94.64512 * 3 2 1 5 5 C 1.50696 * 126.08325 * 0.02562 * 4 3 2 6 6 H 1.09005 * 110.41839 * 345.85140 * 5 4 3 7 7 C 1.54468 * 110.37472 * 108.16383 * 5 4 3 8 8 C 1.54513 * 104.06681 * 142.80872 * 7 5 4 9 9 C 1.54477 * 104.05968 * 0.02562 * 8 7 5 10 10 H 1.09005 * 110.37123 * 94.85372 * 9 8 7 11 11 C 1.50703 * 110.37222 * 217.18725 * 9 8 7 12 12 H 1.08001 * 119.99503 * 356.83466 * 11 9 8 13 13 C 1.37877 * 119.99990 * 176.83668 * 11 9 8 14 14 N 1.31515 * 119.99974 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 120.00114 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.46840 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47278 * 119.99602 * 15 13 11 18 18 H 1.48496 * 109.47240 * 239.99858 * 15 13 11 19 19 O 1.44421 * 104.80487 * 336.01946 * 9 8 7 20 20 C 1.39821 * 107.83554 * 180.26960 * 4 3 2 21 21 C 1.50702 * 125.86168 * 179.76436 * 20 4 3 22 22 N 1.30839 * 108.28238 * 359.58864 * 20 4 3 23 23 N 1.35136 * 126.19268 * 274.67931 * 3 2 1 24 24 C 1.46496 * 126.03494 * 359.94906 * 23 3 2 25 25 H 1.09000 * 109.46863 * 304.66615 * 1 2 3 26 26 H 1.09006 * 109.47194 * 64.65667 * 1 2 3 27 27 H 1.08994 * 109.47162 * 184.65761 * 1 2 3 28 28 H 1.09004 * 110.51144 * 24.16491 * 7 5 4 29 29 H 1.09004 * 110.63059 * 261.51138 * 7 5 4 30 30 H 1.08997 * 110.51231 * 241.35220 * 8 7 5 31 31 H 1.08999 * 110.62672 * 118.70184 * 8 7 5 32 32 H 0.96998 * 120.00033 * 179.97438 * 14 13 11 33 33 H 1.08998 * 109.46960 * 89.99128 * 21 20 4 34 34 H 1.08995 * 109.47229 * 209.99694 * 21 20 4 35 35 H 1.09005 * 109.46680 * 329.99502 * 21 20 4 36 36 H 1.09004 * 109.47336 * 94.17937 * 24 23 3 37 37 H 1.09007 * 109.46992 * 214.17309 * 24 23 3 38 38 H 1.08996 * 109.47622 * 334.17420 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 2.4891 1.8845 1.0935 5 6 2.3848 1.4227 2.5242 6 1 1.6868 0.5894 2.6049 7 6 3.7747 1.0138 3.0600 8 6 3.7657 1.4903 4.5298 9 6 2.3711 2.1301 4.7083 10 1 1.6714 1.4051 5.1241 11 6 2.4606 3.3438 5.5971 12 1 3.4044 3.6156 6.0464 13 6 1.3377 4.1072 5.8367 14 7 0.1886 3.7764 5.2892 15 14 1.4488 5.6120 6.9378 16 1 2.8429 5.7665 7.4257 17 1 1.0569 6.8193 6.1672 18 1 0.5349 5.4461 8.0965 19 8 1.9668 2.5118 3.3754 20 6 3.0543 3.0859 0.6551 21 6 3.6666 4.1460 1.5340 22 7 2.9638 3.1301 -0.6494 23 7 2.3285 1.9610 -1.0870 24 6 2.0250 1.6138 -2.4774 25 1 -0.3633 0.5845 0.8452 26 1 -0.3634 0.4399 -0.9288 27 1 -0.3633 -1.0242 0.0834 28 1 4.5631 1.5171 2.5002 29 1 3.9028 -0.0675 3.0098 30 1 4.5495 2.2290 4.6966 31 1 3.8877 0.6457 5.2079 32 1 -0.6015 4.3132 5.4581 33 1 4.7292 3.9410 1.6639 34 1 3.5393 5.1228 1.0674 35 1 3.1740 4.1408 2.5064 36 1 1.0699 2.0552 -2.7621 37 1 2.8109 1.9980 -3.1277 38 1 1.9684 0.5299 -2.5773 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310095740.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:45 Heat of formation + Delta-G solvation = -24.152699 kcal Electronic energy + Delta-G solvation = -21185.168100 eV Core-core repulsion = 18029.302648 eV Total energy + Delta-G solvation = -3155.865452 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.56231 -39.67458 -39.07957 -35.08749 -34.43805 -32.51743 -31.86231 -30.51302 -29.40628 -28.02082 -26.80371 -25.49862 -23.11558 -21.98392 -21.51277 -20.68246 -18.84880 -18.33516 -17.39549 -17.06841 -16.64147 -16.42275 -16.01797 -15.65405 -15.44336 -15.00280 -14.45177 -14.25996 -14.08444 -14.05878 -13.62181 -13.41486 -13.23220 -12.94577 -12.82500 -12.67598 -12.44771 -12.37520 -12.15314 -11.92619 -11.75151 -11.35798 -11.09836 -10.96774 -10.66213 -10.08485 -9.93440 -9.31906 -8.09492 -6.28240 0.48677 1.31815 1.44168 1.46023 1.56260 1.57979 2.45605 2.59925 3.12370 3.39649 3.90691 4.06355 4.10803 4.15115 4.24005 4.30621 4.32663 4.35818 4.37789 4.48527 4.58476 4.64949 4.74198 4.82795 4.84995 4.99901 5.04426 5.12862 5.17053 5.20932 5.31625 5.39135 5.59873 5.74957 5.80875 6.24168 6.42070 6.58565 6.65700 7.00544 7.46453 8.99059 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.024440 B = 0.005892 C = 0.005724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.370707 B = 4751.273000 C = 4890.252602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.253 3.747 4 C -0.240 4.240 5 C 0.143 3.857 6 H 0.042 0.958 7 C -0.128 4.128 8 C -0.136 4.136 9 C 0.198 3.802 10 H -0.011 1.011 11 C -0.541 4.541 12 H 0.069 0.931 13 C 0.024 3.976 14 N -0.903 5.903 15 Si 0.958 3.042 16 H -0.259 1.259 17 H -0.283 1.283 18 H -0.279 1.279 19 O -0.364 6.364 20 C 0.099 3.901 21 C -0.075 4.075 22 N -0.304 5.304 23 N -0.382 5.382 24 C 0.092 3.908 25 H 0.035 0.965 26 H 0.065 0.935 27 H 0.134 0.866 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.259 0.741 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.987 -6.742 -13.144 15.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.084 3.916 4 C -0.252 4.252 5 C 0.084 3.916 6 H 0.060 0.940 7 C -0.166 4.166 8 C -0.174 4.174 9 C 0.142 3.858 10 H 0.007 0.993 11 C -0.579 4.579 12 H 0.087 0.913 13 C -0.178 4.178 14 N -0.541 5.541 15 Si 0.783 3.217 16 H -0.183 1.183 17 H -0.209 1.209 18 H -0.205 1.205 19 O -0.284 6.284 20 C -0.065 4.065 21 C -0.134 4.134 22 N -0.131 5.131 23 N -0.174 5.174 24 C -0.048 4.048 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.152 0.848 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.952 -6.149 -14.405 15.939 hybrid contribution -0.747 0.147 1.254 1.467 sum 2.205 -6.002 -13.151 14.623 Atomic orbital electron populations 1.23383 0.76164 1.05748 1.01452 1.86062 1.22414 1.20631 1.93317 1.18624 0.99193 0.86669 0.87126 1.19680 1.13301 0.97804 0.94439 1.20811 0.94711 0.89799 0.86310 0.93965 1.22820 0.96828 1.01219 0.95734 1.22914 0.98832 0.99959 0.95687 1.20405 0.89730 0.94070 0.81613 0.99314 1.21451 0.95659 1.12509 1.28244 0.91322 1.25909 0.94970 1.00457 0.96441 1.70194 1.00320 1.39796 1.43747 0.85523 0.78734 0.79086 0.78380 1.18317 1.20914 1.20466 1.89436 1.80889 1.39493 1.18573 1.22185 0.97358 0.95709 0.91279 1.20312 1.00648 0.94364 0.98042 1.77304 1.20953 1.02631 1.12183 1.49100 1.46730 1.13920 1.07621 1.22201 1.03520 1.03241 0.75810 0.94595 0.91589 0.84789 0.91164 0.90122 0.91520 0.91126 0.93186 0.89437 0.90727 0.90165 0.89476 0.87932 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.13 113.37 1.26 1.88 16 2 O -0.31 -9.34 10.29 -90.88 -0.94 -10.27 16 3 C 0.25 8.75 6.93 83.65 0.58 9.33 16 4 C -0.24 -9.65 5.05 -20.02 -0.10 -9.75 16 5 C 0.14 6.21 3.58 30.35 0.11 6.32 16 6 H 0.04 1.86 8.03 -2.38 -0.02 1.84 16 7 C -0.13 -4.80 6.62 31.61 0.21 -4.59 16 8 C -0.14 -5.65 6.61 31.61 0.21 -5.44 16 9 C 0.20 10.39 3.11 30.35 0.09 10.48 16 10 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 11 C -0.54 -30.32 8.78 25.60 0.22 -30.10 16 12 H 0.07 3.68 7.59 -2.91 -0.02 3.66 16 13 C 0.02 1.36 5.42 84.65 0.46 1.82 16 14 N -0.90 -54.81 12.94 21.45 0.28 -54.53 16 15 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 16 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 O -0.36 -19.30 8.45 -148.98 -1.26 -20.56 16 20 C 0.10 3.90 7.11 43.09 0.31 4.21 16 21 C -0.08 -2.81 10.24 71.24 0.73 -2.08 16 22 N -0.30 -11.09 12.57 -47.41 -0.60 -11.69 16 23 N -0.38 -11.91 4.02 -481.26 -1.93 -13.84 16 24 C 0.09 1.72 11.44 127.77 1.46 3.18 16 25 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.07 2.51 7.82 -2.38 -0.02 2.49 16 29 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 30 H 0.07 2.72 7.73 -2.39 -0.02 2.70 16 31 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 33 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.08 3.61 6.09 -2.38 -0.01 3.60 16 36 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.11 1.55 8.05 -2.39 -0.02 1.53 16 Total: -1.00 -71.28 320.19 4.17 -67.11 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 1.04 Total: 12.49 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 5.54 Total: -14.76 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -2.25 Total: -80.06 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -2.19 Total: -30.84 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -71.28 4.17 -67.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310095740.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.956 kcal (2) G-P(sol) polarization free energy of solvation -71.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds