Wall clock time and date at job start Mon Mar 30 2020 04:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31006 * 1 3 3 Si 1.86802 * 120.00178 * 2 1 4 4 H 1.48497 * 109.47461 * 240.00046 * 3 2 1 5 5 H 1.48501 * 109.47163 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47178 * 119.99781 * 3 2 1 7 7 C 1.39592 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99632 * 179.97438 * 7 2 1 9 9 N 1.36114 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00032 * 180.02562 * 9 7 2 11 11 O 1.21494 * 119.99861 * 0.02562 * 10 9 7 12 12 C 1.48829 * 119.99717 * 179.97438 * 10 9 7 13 13 O 1.21442 * 120.00458 * 0.02562 * 12 10 9 14 14 N 1.34780 * 119.99717 * 179.97438 * 12 10 9 15 15 C 1.47741 * 125.94286 * 0.02835 * 14 12 10 16 16 C 1.55439 * 106.78830 * 181.01297 * 15 14 12 17 17 H 1.09010 * 113.07027 * 213.64764 * 16 15 14 18 18 C 1.52993 * 106.45966 * 90.00488 * 16 15 14 19 19 C 1.52600 * 111.00808 * 197.01612 * 18 16 15 20 20 C 1.53310 * 108.45120 * 62.30639 * 19 18 16 21 21 C 1.52820 * 108.15930 * 296.15148 * 20 19 18 22 22 C 1.50851 * 111.67014 * 59.12768 * 21 20 19 23 23 H 1.08997 * 109.34774 * 185.14526 * 22 21 20 24 24 C 1.47938 * 125.74596 * 180.02562 * 14 12 10 25 25 H 0.96999 * 120.00507 * 0.02562 * 1 2 3 26 26 H 0.97004 * 120.00052 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.97832 * 61.67815 * 15 14 12 28 28 H 1.09001 * 110.02985 * 300.36617 * 15 14 12 29 29 H 1.08997 * 109.16787 * 317.41539 * 18 16 15 30 30 H 1.09001 * 109.16471 * 76.67240 * 18 16 15 31 31 H 1.09000 * 109.63507 * 181.99420 * 19 18 16 32 32 H 1.08997 * 109.63973 * 302.60867 * 19 18 16 33 33 H 1.08995 * 109.72544 * 55.82140 * 20 19 18 34 34 H 1.09003 * 109.72278 * 176.44831 * 20 19 18 35 35 H 1.08996 * 109.04486 * 298.56207 * 21 20 19 36 36 H 1.09000 * 109.03675 * 179.68315 * 21 20 19 37 37 H 1.09002 * 110.57204 * 85.91316 * 24 14 12 38 38 H 1.09003 * 110.56891 * 323.19066 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 3.0979 1.6964 -1.2125 5 1 1.2792 2.7465 0.0006 6 1 3.0978 1.6964 1.2125 7 6 2.0080 -1.2089 -0.0005 8 1 3.0880 -1.2089 -0.0010 9 7 1.3274 -2.3877 -0.0016 10 6 2.0013 -3.5549 -0.0016 11 8 3.2163 -3.5549 -0.0002 12 6 1.2571 -4.8438 -0.0022 13 8 0.0427 -4.8438 -0.0031 14 7 1.9310 -6.0110 -0.0027 15 6 3.4005 -6.1640 -0.0022 16 6 3.6930 -7.6904 -0.0294 17 1 4.5921 -7.9629 0.5234 18 6 3.7780 -8.0892 -1.5040 19 6 3.6439 -9.6001 -1.6707 20 6 2.2612 -10.0236 -1.1617 21 6 2.1914 -9.7216 0.3347 22 6 2.4124 -8.2565 0.6182 23 1 2.4461 -8.0983 1.6961 24 6 1.3233 -7.3598 -0.0038 25 1 -0.4851 0.8400 -0.0004 26 1 0.3574 -2.3877 -0.0016 27 1 3.8208 -5.7198 0.9001 28 1 3.8258 -5.6871 -0.8852 29 1 2.9774 -7.5957 -2.0549 30 1 4.7392 -7.7693 -1.9064 31 1 3.7428 -9.8626 -2.7239 32 1 4.4177 -10.1028 -1.0905 33 1 1.4882 -9.4625 -1.6867 34 1 2.1186 -11.0912 -1.3291 35 1 2.9554 -10.3028 0.8509 36 1 1.2105 -10.0124 0.7108 37 1 1.1001 -7.6785 -1.0220 38 1 0.4208 -7.3737 0.6073 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310510298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:38 Heat of formation + Delta-G solvation = -83.503398 kcal Electronic energy + Delta-G solvation = -20659.313732 eV Core-core repulsion = 17500.874641 eV Total energy + Delta-G solvation = -3158.439091 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.48188 -38.77131 -36.97690 -35.13540 -34.05113 -31.71711 -31.42846 -30.55013 -27.35379 -25.95592 -24.65793 -22.51275 -21.92996 -21.28845 -18.87191 -18.73239 -18.09473 -16.60094 -16.06021 -15.95147 -15.03244 -14.82376 -14.37105 -14.15774 -14.02577 -13.79131 -13.35831 -13.17260 -13.00326 -12.42818 -12.37920 -11.96074 -11.75483 -11.66124 -11.57169 -11.27417 -11.16342 -11.11886 -10.56650 -10.44535 -10.40372 -10.28571 -10.07843 -9.96966 -9.68189 -8.27348 -8.17320 -8.15476 -6.64477 -3.96953 2.48605 3.14883 3.18273 3.18444 3.30551 4.05859 4.28949 4.36882 4.51519 4.60519 4.85299 5.03475 5.09865 5.12787 5.20286 5.25333 5.36936 5.41713 5.46905 5.58270 5.73346 5.79568 5.88302 5.92533 6.00235 6.03905 6.06927 6.17047 6.22011 6.25136 6.35964 6.44112 6.67702 7.32918 7.75697 7.86844 8.32146 8.61849 8.98393 9.34802 9.87842 10.50565 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.044327 B = 0.004226 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.524492 B = 6624.741762 C = 6982.208090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.031 3.969 3 Si 0.939 3.061 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.112 0.888 9 N -0.501 5.501 10 C 0.398 3.602 11 O -0.591 6.591 12 C 0.527 3.473 13 O -0.549 6.549 14 N -0.604 5.604 15 C 0.122 3.878 16 C -0.099 4.099 17 H 0.094 0.906 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.123 4.123 21 C -0.104 4.104 22 C -0.097 4.097 23 H 0.079 0.921 24 C 0.111 3.889 25 H 0.281 0.719 26 H 0.404 0.596 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.127 -16.920 -0.873 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.437 4.437 8 H 0.129 0.871 9 N -0.135 5.135 10 C 0.183 3.817 11 O -0.479 6.479 12 C 0.314 3.686 13 O -0.426 6.426 14 N -0.340 5.340 15 C -0.001 4.001 16 C -0.118 4.118 17 H 0.113 0.887 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.160 4.160 21 C -0.142 4.142 22 C -0.117 4.117 23 H 0.097 0.903 24 C -0.011 4.011 25 H 0.091 0.909 26 H 0.240 0.760 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.047 -16.654 -0.874 17.423 hybrid contribution -0.241 0.839 0.021 0.873 sum 4.805 -15.815 -0.853 16.550 Atomic orbital electron populations 1.69474 1.06515 1.29402 1.45456 1.25573 0.95611 1.00414 0.95972 0.85785 0.78864 0.79395 0.79471 1.19405 1.20611 1.19410 1.19814 0.93897 0.81874 1.48077 0.87067 1.41539 1.10444 1.04133 1.57431 1.18873 0.87836 0.84080 0.90955 1.90560 1.12796 1.86406 1.58178 1.20493 0.87019 0.84725 0.76382 1.90689 1.13944 1.87481 1.50494 1.48393 1.07869 1.04605 1.73087 1.22449 0.79972 0.94012 1.03673 1.22421 0.97899 0.94954 0.96481 0.88738 1.21588 1.02348 0.95762 0.95661 1.21520 0.97168 0.96177 1.00671 1.21625 0.97719 1.00694 0.95987 1.20897 1.01946 0.94720 0.96624 1.21612 0.95060 0.94528 1.00458 0.90272 1.22235 0.96525 0.81547 1.00840 0.90904 0.76050 0.90823 0.90289 0.91633 0.91734 0.92131 0.91949 0.91629 0.91996 0.91647 0.91839 0.91402 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.62 13.03 55.53 0.72 -22.90 16 2 C 0.03 0.82 5.51 -17.40 -0.10 0.72 16 3 Si 0.94 20.25 29.56 -169.99 -5.02 15.23 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.31 -8.52 9.67 -15.15 -0.15 -8.67 16 8 H 0.11 3.14 7.15 -52.49 -0.38 2.76 16 9 N -0.50 -13.68 5.25 -11.59 -0.06 -13.74 16 10 C 0.40 10.27 7.79 -11.87 -0.09 10.18 16 11 O -0.59 -15.76 13.72 5.37 0.07 -15.69 16 12 C 0.53 12.12 7.90 -11.87 -0.09 12.02 16 13 O -0.55 -13.56 16.74 5.42 0.09 -13.47 16 14 N -0.60 -11.17 3.35 -170.01 -0.57 -11.74 16 15 C 0.12 1.96 4.79 -2.07 -0.01 1.95 16 16 C -0.10 -1.14 3.64 -88.67 -0.32 -1.46 16 17 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 18 C -0.12 -1.24 4.60 -26.94 -0.12 -1.36 16 19 C -0.12 -1.02 5.93 -26.78 -0.16 -1.18 16 20 C -0.12 -1.05 5.77 -26.66 -0.15 -1.20 16 21 C -0.10 -0.91 5.38 -27.90 -0.15 -1.06 16 22 C -0.10 -1.10 2.92 -90.42 -0.26 -1.36 16 23 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 24 C 0.11 1.61 5.79 -2.64 -0.02 1.60 16 25 H 0.28 7.07 8.30 -40.82 -0.34 6.73 16 26 H 0.40 11.17 7.35 -40.82 -0.30 10.87 16 27 H 0.07 1.28 7.72 -51.93 -0.40 0.88 16 28 H 0.08 1.39 7.23 -51.93 -0.38 1.01 16 29 H 0.06 0.82 6.92 -51.93 -0.36 0.46 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.62 6.69 -51.93 -0.35 0.27 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.94 5.78 -51.93 -0.30 0.64 16 38 H 0.07 1.13 8.05 -51.93 -0.42 0.72 16 LS Contribution 303.00 15.07 4.57 4.57 Total: -1.00 -30.53 303.00 -7.22 -37.76 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -5.39 Total: 9.80 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: -1.63 Total: 10.19 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.09 Total: -48.37 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: 0.16 Total: -29.16 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.53 -7.22 -37.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310510298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.748 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds