Wall clock time and date at job start Mon Mar 30 2020 04:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31006 * 1 3 3 Si 1.86802 * 120.00178 * 2 1 4 4 H 1.48497 * 109.47461 * 240.00046 * 3 2 1 5 5 H 1.48501 * 109.47163 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47178 * 119.99781 * 3 2 1 7 7 C 1.39592 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99632 * 179.97438 * 7 2 1 9 9 N 1.36114 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00032 * 180.02562 * 9 7 2 11 11 O 1.21494 * 119.99861 * 0.02562 * 10 9 7 12 12 C 1.48829 * 119.99717 * 179.97438 * 10 9 7 13 13 O 1.21442 * 120.00458 * 0.02562 * 12 10 9 14 14 N 1.34780 * 119.99717 * 179.97438 * 12 10 9 15 15 C 1.47741 * 125.94286 * 0.02835 * 14 12 10 16 16 C 1.55439 * 106.78830 * 181.01297 * 15 14 12 17 17 H 1.09010 * 113.07027 * 213.64764 * 16 15 14 18 18 C 1.52993 * 106.45966 * 90.00488 * 16 15 14 19 19 C 1.52600 * 111.00808 * 197.01612 * 18 16 15 20 20 C 1.53310 * 108.45120 * 62.30639 * 19 18 16 21 21 C 1.52820 * 108.15930 * 296.15148 * 20 19 18 22 22 C 1.50851 * 111.67014 * 59.12768 * 21 20 19 23 23 H 1.08997 * 109.34774 * 185.14526 * 22 21 20 24 24 C 1.47938 * 125.74596 * 180.02562 * 14 12 10 25 25 H 0.96999 * 120.00507 * 0.02562 * 1 2 3 26 26 H 0.97004 * 120.00052 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.97832 * 61.67815 * 15 14 12 28 28 H 1.09001 * 110.02985 * 300.36617 * 15 14 12 29 29 H 1.08997 * 109.16787 * 317.41539 * 18 16 15 30 30 H 1.09001 * 109.16471 * 76.67240 * 18 16 15 31 31 H 1.09000 * 109.63507 * 181.99420 * 19 18 16 32 32 H 1.08997 * 109.63973 * 302.60867 * 19 18 16 33 33 H 1.08995 * 109.72544 * 55.82140 * 20 19 18 34 34 H 1.09003 * 109.72278 * 176.44831 * 20 19 18 35 35 H 1.08996 * 109.04486 * 298.56207 * 21 20 19 36 36 H 1.09000 * 109.03675 * 179.68315 * 21 20 19 37 37 H 1.09002 * 110.57204 * 85.91316 * 24 14 12 38 38 H 1.09003 * 110.56891 * 323.19066 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 3.0979 1.6964 -1.2125 5 1 1.2792 2.7465 0.0006 6 1 3.0978 1.6964 1.2125 7 6 2.0080 -1.2089 -0.0005 8 1 3.0880 -1.2089 -0.0010 9 7 1.3274 -2.3877 -0.0016 10 6 2.0013 -3.5549 -0.0016 11 8 3.2163 -3.5549 -0.0002 12 6 1.2571 -4.8438 -0.0022 13 8 0.0427 -4.8438 -0.0031 14 7 1.9310 -6.0110 -0.0027 15 6 3.4005 -6.1640 -0.0022 16 6 3.6930 -7.6904 -0.0294 17 1 4.5921 -7.9629 0.5234 18 6 3.7780 -8.0892 -1.5040 19 6 3.6439 -9.6001 -1.6707 20 6 2.2612 -10.0236 -1.1617 21 6 2.1914 -9.7216 0.3347 22 6 2.4124 -8.2565 0.6182 23 1 2.4461 -8.0983 1.6961 24 6 1.3233 -7.3598 -0.0038 25 1 -0.4851 0.8400 -0.0004 26 1 0.3574 -2.3877 -0.0016 27 1 3.8208 -5.7198 0.9001 28 1 3.8258 -5.6871 -0.8852 29 1 2.9774 -7.5957 -2.0549 30 1 4.7392 -7.7693 -1.9064 31 1 3.7428 -9.8626 -2.7239 32 1 4.4177 -10.1028 -1.0905 33 1 1.4882 -9.4625 -1.6867 34 1 2.1186 -11.0912 -1.3291 35 1 2.9554 -10.3028 0.8509 36 1 1.2105 -10.0124 0.7108 37 1 1.1001 -7.6785 -1.0220 38 1 0.4208 -7.3737 0.6073 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310510298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:37 Heat of formation + Delta-G solvation = -103.930896 kcal Electronic energy + Delta-G solvation = -20660.199535 eV Core-core repulsion = 17500.874641 eV Total energy + Delta-G solvation = -3159.324894 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.84024 -40.40879 -38.88388 -36.63811 -35.84162 -33.49042 -32.62075 -31.75821 -28.60555 -27.78047 -26.15129 -23.81540 -23.03017 -22.41399 -20.77550 -20.06042 -19.68182 -18.21361 -17.81784 -17.31735 -16.82458 -16.43060 -15.84424 -15.39760 -15.16227 -15.12546 -14.82747 -14.61971 -14.20754 -13.96835 -13.76776 -13.67764 -12.97487 -12.94754 -12.67974 -12.60389 -12.52568 -12.21354 -12.15664 -12.11604 -11.96805 -11.66163 -11.30733 -10.94515 -10.81440 -10.29403 -10.15939 -9.76497 -8.66767 -6.11928 0.56624 1.38899 1.47799 1.51688 1.67289 2.26190 2.33414 3.02817 3.13386 3.44761 3.55003 3.73151 3.96820 4.12483 4.16740 4.29002 4.40685 4.41970 4.55433 4.57510 4.65674 4.75352 4.81738 4.91044 5.07710 5.13504 5.19706 5.22920 5.24081 5.29526 5.36189 5.42686 5.49869 5.62186 5.67113 6.15624 6.30566 6.71630 6.94125 7.25975 7.78092 8.49204 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.044327 B = 0.004226 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.524492 B = 6624.741762 C = 6982.208090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.005 4.005 3 Si 1.012 2.988 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.346 4.346 8 H 0.100 0.900 9 N -0.513 5.513 10 C 0.392 3.608 11 O -0.605 6.605 12 C 0.524 3.476 13 O -0.574 6.574 14 N -0.595 5.595 15 C 0.115 3.885 16 C -0.082 4.082 17 H 0.123 0.877 18 C -0.116 4.116 19 C -0.112 4.112 20 C -0.124 4.124 21 C -0.099 4.099 22 C -0.086 4.086 23 H 0.081 0.919 24 C 0.103 3.897 25 H 0.289 0.711 26 H 0.399 0.601 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.264 -18.610 -0.707 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.209 4.209 3 Si 0.832 3.168 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.475 4.475 8 H 0.117 0.883 9 N -0.147 5.147 10 C 0.177 3.823 11 O -0.494 6.494 12 C 0.310 3.690 13 O -0.454 6.454 14 N -0.329 5.329 15 C -0.007 4.007 16 C -0.101 4.101 17 H 0.141 0.859 18 C -0.153 4.153 19 C -0.149 4.149 20 C -0.161 4.161 21 C -0.137 4.137 22 C -0.105 4.105 23 H 0.100 0.900 24 C -0.018 4.018 25 H 0.099 0.901 26 H 0.233 0.767 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.202 -18.396 -0.710 19.426 hybrid contribution -0.582 1.278 -0.047 1.405 sum 5.620 -17.118 -0.757 18.033 Atomic orbital electron populations 1.69549 1.07912 1.30888 1.45215 1.26568 0.96500 1.03513 0.94344 0.84734 0.77726 0.74656 0.79671 1.18800 1.19066 1.18785 1.19949 0.93678 0.82979 1.50908 0.88254 1.41643 1.10132 1.04744 1.58195 1.19468 0.87963 0.84973 0.89893 1.90527 1.13433 1.87013 1.58425 1.19958 0.86624 0.85165 0.77288 1.90663 1.14558 1.87894 1.52288 1.48502 1.09259 1.04854 1.70249 1.22618 0.78262 0.97828 1.02039 1.22443 0.99172 0.90701 0.97739 0.85930 1.21573 1.01717 0.97563 0.94492 1.21498 0.97777 0.94105 1.01563 1.21649 0.97183 1.01722 0.95550 1.20902 1.03231 0.92444 0.97114 1.21625 0.93005 0.95670 1.00189 0.90020 1.22584 0.97567 0.79829 1.01806 0.90089 0.76669 0.92287 0.92126 0.94017 0.91318 0.91448 0.90222 0.93014 0.90050 0.89430 0.91063 0.90480 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.37 13.03 21.77 0.28 -49.09 16 2 C -0.01 -0.28 5.51 85.14 0.47 0.19 16 3 Si 1.01 41.37 29.56 68.60 2.03 43.40 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.35 -19.89 9.67 84.36 0.82 -19.07 16 8 H 0.10 5.82 7.15 -2.91 -0.02 5.80 16 9 N -0.51 -29.29 5.25 -308.88 -1.62 -30.91 16 10 C 0.39 21.13 7.79 87.08 0.68 21.80 16 11 O -0.60 -33.53 13.72 -3.70 -0.05 -33.58 16 12 C 0.52 25.01 7.90 87.08 0.69 25.69 16 13 O -0.57 -29.38 16.74 -3.53 -0.06 -29.44 16 14 N -0.60 -22.40 3.35 -810.11 -2.72 -25.12 16 15 C 0.11 3.73 4.79 86.98 0.42 4.14 16 16 C -0.08 -1.72 3.64 -9.53 -0.03 -1.75 16 17 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16 18 C -0.12 -2.25 4.60 30.46 0.14 -2.11 16 19 C -0.11 -1.55 5.93 30.57 0.18 -1.37 16 20 C -0.12 -1.69 5.77 30.64 0.18 -1.51 16 21 C -0.10 -1.37 5.38 29.84 0.16 -1.21 16 22 C -0.09 -1.73 2.92 -10.66 -0.03 -1.76 16 23 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 24 C 0.10 2.93 5.79 86.50 0.50 3.44 16 25 H 0.29 14.54 8.30 -92.71 -0.77 13.77 16 26 H 0.40 23.15 7.35 -92.71 -0.68 22.47 16 27 H 0.06 2.09 7.72 -2.39 -0.02 2.07 16 28 H 0.06 2.19 7.23 -2.39 -0.02 2.18 16 29 H 0.04 1.01 6.92 -2.39 -0.02 0.99 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 0.86 6.69 -2.39 -0.02 0.84 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 2.09 5.78 -2.39 -0.01 2.08 16 38 H 0.07 2.07 8.05 -2.39 -0.02 2.05 16 Total: -1.00 -68.24 303.00 2.42 -65.82 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: 0.39 Total: 32.43 kcal Atomic # 6 Polarization: 22.33 SS G_CDS: 4.16 Total: 26.49 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -4.05 Total: -105.11 kcal Atomic # 8 Polarization: -62.91 SS G_CDS: -0.11 Total: -63.02 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -68.24 2.42 -65.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310510298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.110 kcal (2) G-P(sol) polarization free energy of solvation -68.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds