Wall clock time and date at job start Mon Mar 30 2020 04:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 110.01927 * 2 1 4 4 N 1.29942 * 126.28412 * 238.58122 * 3 2 1 5 5 O 1.21298 * 110.24923 * 179.72128 * 4 3 2 6 6 C 1.33638 * 109.81308 * 0.47159 * 5 4 3 7 7 C 1.50694 * 126.55373 * 179.79651 * 6 5 4 8 8 C 1.53004 * 109.47412 * 269.68797 * 7 6 5 9 9 H 1.08998 * 109.47285 * 305.00031 * 8 7 6 10 10 O 1.42896 * 109.46914 * 65.00139 * 8 7 6 11 11 C 1.50700 * 109.47208 * 184.99886 * 8 7 6 12 12 H 1.08002 * 119.99770 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00083 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00147 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 120.00278 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47228 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.46793 * 300.00001 * 15 13 11 18 18 H 1.48500 * 109.47000 * 60.00094 * 15 13 11 19 19 N 1.31125 * 106.89620 * 359.53684 * 6 5 4 20 20 C 1.54276 * 110.06922 * 121.41413 * 2 1 3 21 21 C 1.54888 * 104.19457 * 95.69620 * 20 2 1 22 22 C 1.54884 * 102.74780 * 37.94137 * 21 20 2 23 23 C 1.53872 * 110.03386 * 238.60008 * 2 1 3 24 24 H 1.09005 * 109.46679 * 60.70174 * 1 2 3 25 25 H 1.09002 * 109.47378 * 180.70392 * 1 2 3 26 26 H 1.09009 * 109.47276 * 300.70920 * 1 2 3 27 27 H 1.09004 * 109.47461 * 149.68636 * 7 6 5 28 28 H 1.09005 * 109.47220 * 29.69074 * 7 6 5 29 29 H 0.96699 * 114.00348 * 60.00046 * 10 8 7 30 30 H 0.97005 * 119.99661 * 359.97438 * 14 13 11 31 31 H 1.08995 * 110.48339 * 214.37516 * 20 2 1 32 32 H 1.08999 * 110.48730 * 337.01494 * 20 2 1 33 33 H 1.08999 * 110.75485 * 279.62686 * 21 20 2 34 34 H 1.09001 * 110.75376 * 156.25827 * 21 20 2 35 35 H 1.09000 * 110.48947 * 203.37752 * 22 21 20 36 36 H 1.08998 * 110.48854 * 80.74012 * 22 21 20 37 37 H 1.09002 * 110.03361 * 359.96054 * 23 2 1 38 38 H 1.09009 * 110.02652 * 121.38260 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0459 1.4160 0.0000 4 7 2.8222 1.9516 -0.8939 5 8 3.0527 3.1083 -0.6108 6 6 2.4347 3.4273 0.5303 7 6 2.4694 4.7632 1.2267 8 6 3.6377 4.7935 2.2142 9 1 3.5573 3.9487 2.8983 10 8 4.8704 4.7094 1.4962 11 6 3.5998 6.0800 2.9980 12 1 2.8200 6.8035 2.8109 13 6 4.5604 6.3335 3.9540 14 7 5.5102 5.4527 4.1814 15 14 4.5130 7.9279 4.9261 16 1 5.6470 7.9573 5.8843 17 1 4.6215 9.0791 3.9944 18 1 3.2323 8.0144 5.6728 19 7 1.7878 2.3573 0.9253 20 6 2.0594 -0.7553 1.2367 21 6 2.3297 -2.1897 0.7187 22 6 2.8884 -1.9397 -0.7041 23 6 2.0571 -0.7532 -1.2339 24 1 -0.3633 0.5029 -0.8963 25 1 -0.3634 -1.0276 0.0126 26 1 -0.3634 0.5248 0.8836 27 1 1.5343 4.9165 1.7655 28 1 2.5971 5.5547 0.4883 29 1 5.0094 5.4308 0.8675 30 1 5.5346 4.6246 3.6769 31 1 2.9818 -0.2993 1.5961 32 1 1.3074 -0.7699 2.0256 33 1 1.4051 -2.7653 0.6750 34 1 3.0697 -2.6923 1.3415 35 1 2.7414 -2.8188 -1.3316 36 1 3.9448 -1.6751 -0.6581 37 1 1.2229 -1.1193 -1.8324 38 1 2.6861 -0.0944 -1.8328 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000312951447.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:28 Heat of formation + Delta-G solvation = -35.662818 kcal Electronic energy + Delta-G solvation = -20549.807395 eV Core-core repulsion = 17393.442827 eV Total energy + Delta-G solvation = -3156.364568 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.59881 -40.03665 -38.55647 -36.58864 -34.42989 -34.24496 -32.07796 -31.16975 -29.76440 -27.30131 -26.74379 -24.84345 -24.20519 -22.92637 -21.54942 -20.31948 -19.52137 -19.03400 -18.47982 -17.14009 -16.72865 -16.30192 -16.03721 -15.65582 -15.43988 -14.87419 -14.71498 -14.61729 -14.02037 -13.90615 -13.69668 -13.46970 -12.82436 -12.69940 -12.53771 -12.35566 -12.28505 -12.24030 -12.09823 -12.03774 -11.91145 -11.86365 -11.74079 -11.51032 -11.46419 -10.88065 -10.63786 -10.17558 -8.62909 -6.49497 0.10008 1.19086 1.58690 1.65958 1.81855 1.84620 2.52142 2.60776 2.92236 3.16812 3.49216 3.60684 3.73512 3.88262 4.11668 4.18901 4.23430 4.25307 4.33596 4.37854 4.43697 4.61727 4.63480 4.80369 4.81034 4.85030 4.89152 4.94121 4.98838 5.07191 5.13378 5.23950 5.29769 5.32144 5.37511 5.75637 6.12004 6.51457 7.11061 7.12925 7.47875 8.74872 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.033703 B = 0.004288 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.586809 B = 6528.227674 C = 6686.784293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.021 3.979 3 C 0.178 3.822 4 N -0.409 5.409 5 O 0.060 5.940 6 C 0.206 3.794 7 C -0.039 4.039 8 C 0.222 3.778 9 H 0.016 0.984 10 O -0.595 6.595 11 C -0.654 4.654 12 H 0.070 0.930 13 C -0.017 4.017 14 N -0.922 5.922 15 Si 1.118 2.882 16 H -0.292 1.292 17 H -0.264 1.264 18 H -0.268 1.268 19 N -0.509 5.509 20 C -0.111 4.111 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.118 4.118 24 H 0.055 0.945 25 H 0.100 0.900 26 H 0.054 0.946 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.372 0.628 30 H 0.265 0.735 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.097 0.903 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.297 -11.073 -9.524 17.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.019 3.981 3 C -0.095 4.095 4 N -0.121 5.121 5 O 0.008 5.992 6 C -0.013 4.013 7 C -0.078 4.078 8 C 0.164 3.836 9 H 0.034 0.966 10 O -0.402 6.402 11 C -0.692 4.692 12 H 0.088 0.912 13 C -0.219 4.219 14 N -0.557 5.557 15 Si 0.939 3.061 16 H -0.218 1.218 17 H -0.189 1.189 18 H -0.193 1.193 19 N -0.244 5.244 20 C -0.149 4.149 21 C -0.150 4.150 22 C -0.159 4.159 23 C -0.156 4.156 24 H 0.074 0.926 25 H 0.119 0.881 26 H 0.074 0.926 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.219 0.781 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.116 0.884 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.426 -11.420 -8.455 17.052 hybrid contribution -0.364 -0.005 -1.293 1.344 sum -9.790 -11.426 -9.749 17.928 Atomic orbital electron populations 1.21852 0.90346 1.04157 1.02104 1.19936 0.97513 0.82307 0.98377 1.26414 0.95184 1.00375 0.87519 1.74476 1.19983 0.92729 1.24938 1.85235 1.55880 1.21841 1.36272 1.29298 0.87991 0.99256 0.84791 1.21121 1.03314 0.85263 0.98089 1.19358 0.79919 0.96186 0.88157 0.96579 1.86472 1.42675 1.52490 1.58572 1.22732 1.16580 1.05345 1.24506 0.91180 1.27362 0.91790 1.05812 0.96903 1.70794 1.33380 1.09781 1.41793 0.82937 0.76585 0.71250 0.75294 1.21750 1.18852 1.19337 1.71856 1.25275 0.99895 1.27324 1.22448 1.00095 0.96388 0.96009 1.22508 1.02397 0.94457 0.95688 1.22363 0.98491 0.97957 0.97075 1.22337 1.00824 0.96963 0.95464 0.92626 0.88125 0.92642 0.86278 0.86175 0.78093 0.92483 0.94843 0.89897 0.88475 0.90636 0.88667 0.93305 0.88448 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 8.13 71.98 0.59 -2.09 16 2 C 0.02 0.54 0.91 -52.20 -0.05 0.49 16 3 C 0.18 6.34 6.32 138.46 0.88 7.22 16 4 N -0.41 -15.55 10.68 -60.35 -0.64 -16.20 16 5 O 0.06 2.37 11.31 74.88 0.85 3.22 16 6 C 0.21 8.08 7.54 88.38 0.67 8.75 16 7 C -0.04 -1.47 5.46 29.85 0.16 -1.30 16 8 C 0.22 10.84 2.42 29.85 0.07 10.92 16 9 H 0.02 0.92 8.01 -2.39 -0.02 0.90 16 10 O -0.60 -29.56 11.77 -148.98 -1.75 -31.32 16 11 C -0.65 -34.02 8.76 25.60 0.22 -33.80 16 12 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 13 C -0.02 -0.92 5.40 84.65 0.46 -0.46 16 14 N -0.92 -56.35 13.53 21.45 0.29 -56.06 16 15 Si 1.12 47.51 29.90 68.60 2.05 49.56 16 16 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 18 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 19 N -0.51 -20.02 11.55 -303.25 -3.50 -23.53 16 20 C -0.11 -2.80 5.89 31.67 0.19 -2.62 16 21 C -0.11 -2.01 6.91 31.88 0.22 -1.79 16 22 C -0.12 -2.29 6.83 31.66 0.22 -2.08 16 23 C -0.12 -2.63 6.09 31.32 0.19 -2.44 16 24 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.12 4.24 8.14 -2.38 -0.02 4.22 16 28 H 0.12 3.86 8.14 -2.38 -0.02 3.84 16 29 H 0.37 15.78 9.04 -74.06 -0.67 15.11 16 30 H 0.26 16.89 6.47 -92.70 -0.60 16.29 16 31 H 0.03 1.06 7.85 -2.39 -0.02 1.04 16 32 H 0.08 1.95 7.84 -2.39 -0.02 1.93 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.10 1.67 7.67 -2.39 -0.02 1.65 16 38 H 0.06 1.54 6.60 -2.38 -0.02 1.52 16 Total: -1.00 -67.99 315.21 1.66 -66.33 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.56 Total: 27.19 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 3.81 Total: -19.21 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -3.86 Total: -95.78 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.91 Total: -28.10 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.05 Total: 49.56 kcal Total: -67.99 1.66 -66.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312951447.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.670 kcal (2) G-P(sol) polarization free energy of solvation -67.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds