Wall clock time and date at job start Mon Mar 30 2020 05:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47246 * 2 1 4 4 C 1.50703 * 109.47276 * 239.99650 * 2 1 3 5 5 H 1.07994 * 120.00236 * 239.99921 * 4 2 1 6 6 C 1.37882 * 119.99355 * 60.00212 * 4 2 1 7 7 N 1.31511 * 120.00363 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99508 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47365 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47091 * 119.99703 * 8 6 4 11 11 H 1.48499 * 109.47134 * 239.99646 * 8 6 4 12 12 C 1.52997 * 109.47252 * 119.99783 * 2 1 3 13 13 N 1.46502 * 109.47346 * 300.00294 * 12 2 1 14 14 C 1.34781 * 120.00097 * 179.97438 * 13 12 2 15 15 O 1.21692 * 120.00070 * 0.02562 * 14 13 12 16 16 C 1.46654 * 120.00053 * 179.97438 * 14 13 12 17 17 C 1.36541 * 125.98922 * 180.02562 * 16 14 13 18 18 C 1.40361 * 106.70797 * 180.02562 * 17 16 14 19 19 C 1.35130 * 107.11907 * 359.97438 * 18 17 16 20 20 C 1.50697 * 125.62194 * 180.02562 * 19 18 17 21 21 N 1.46905 * 109.47110 * 90.00036 * 20 19 18 22 22 O 1.33933 * 108.76588 * 0.26638 * 19 18 17 23 23 H 1.08997 * 109.47288 * 299.99954 * 1 2 3 24 24 H 1.08993 * 109.47352 * 59.99913 * 1 2 3 25 25 H 1.09001 * 109.47006 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47318 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46691 * 300.00326 * 3 2 1 28 28 H 1.08997 * 109.46939 * 59.99832 * 3 2 1 29 29 H 0.97003 * 119.99970 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47757 * 179.97438 * 12 2 1 31 31 H 1.09001 * 109.47221 * 60.00001 * 12 2 1 32 32 H 0.96992 * 119.99828 * 359.97438 * 13 12 2 33 33 H 1.07992 * 126.64569 * 359.97043 * 17 16 14 34 34 H 1.08001 * 126.44230 * 180.02562 * 18 17 16 35 35 H 1.09002 * 109.47000 * 330.00032 * 20 19 18 36 36 H 1.08995 * 109.47308 * 210.00173 * 20 19 18 37 37 H 1.00901 * 110.99869 * 180.02562 * 21 20 19 38 38 H 1.00896 * 110.99543 * 303.95619 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1484 -2.2857 -3.6037 10 1 1.1678 -1.5867 -4.8164 11 1 3.1472 -0.1858 -4.8160 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8768 -0.4914 3.6696 15 8 2.5765 -1.4807 3.7812 16 6 1.3884 0.2003 4.8670 17 6 1.6419 -0.1580 6.1600 18 6 0.9817 0.7755 6.9742 19 6 0.3625 1.6520 6.1529 20 6 -0.4691 2.8294 6.5923 21 7 0.3919 4.0111 6.7350 22 8 0.6054 1.2989 4.8840 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 0.7081 1.1608 -3.4844 30 1 3.1300 -0.7216 1.2491 31 1 1.6767 -1.7489 1.2493 32 1 0.9943 0.7582 2.3564 33 1 2.2346 -0.9975 6.4919 34 1 0.9714 0.7910 8.0540 35 1 -0.9396 2.6048 7.5496 36 1 -1.2391 3.0287 5.8470 37 1 -0.1428 4.8145 7.0295 38 1 1.1522 3.8294 7.3729 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315717050.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:00 Heat of formation + Delta-G solvation = -50.590262 kcal Electronic energy + Delta-G solvation = -20118.617544 eV Core-core repulsion = 16961.605674 eV Total energy + Delta-G solvation = -3157.011871 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.73698 -40.65335 -38.19177 -35.99527 -35.13059 -33.99231 -32.84631 -30.84328 -27.73887 -27.60534 -27.19165 -25.79536 -23.24523 -22.48552 -21.25661 -20.66938 -19.52646 -17.88901 -17.68211 -17.31333 -16.83165 -16.61821 -16.18405 -15.65061 -15.35401 -14.96114 -14.78878 -14.54967 -14.41993 -14.21663 -14.02063 -13.94435 -13.23919 -13.13476 -12.72149 -12.66945 -12.57431 -12.29333 -12.14671 -11.55249 -11.52584 -11.17875 -11.06805 -10.72550 -10.42303 -10.18129 -9.79336 -9.50826 -8.02653 -6.18940 -0.03218 1.29749 1.42502 1.46263 1.55509 1.58575 2.09624 2.23788 2.48594 3.21098 3.47392 3.76215 3.91012 3.92838 4.31003 4.37856 4.46068 4.49027 4.57740 4.66516 4.85884 4.87242 4.93638 5.01701 5.07400 5.15339 5.24342 5.38761 5.47748 5.63217 5.66495 5.84207 6.09938 6.12690 6.17511 6.40490 6.48609 6.57076 6.84572 7.01500 7.48953 8.96923 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.032224 B = 0.004116 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.719522 B = 6801.419741 C = 7407.851701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.050 3.950 3 C -0.121 4.121 4 C -0.528 4.528 5 H 0.048 0.952 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 0.949 3.051 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.282 1.282 12 C 0.144 3.856 13 N -0.699 5.699 14 C 0.591 3.409 15 O -0.567 6.567 16 C -0.100 4.100 17 C -0.120 4.120 18 C -0.209 4.209 19 C 0.020 3.980 20 C 0.138 3.862 21 N -0.860 5.860 22 O -0.169 6.169 23 H 0.030 0.970 24 H 0.064 0.936 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.065 0.935 28 H 0.029 0.971 29 H 0.260 0.740 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.409 0.591 33 H 0.166 0.834 34 H 0.191 0.809 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.365 0.635 38 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.367 5.957 20.059 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.049 3.951 3 C -0.179 4.179 4 C -0.566 4.566 5 H 0.067 0.933 6 C -0.172 4.172 7 N -0.539 5.539 8 Si 0.775 3.225 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.021 3.979 13 N -0.349 5.349 14 C 0.378 3.622 15 O -0.449 6.449 16 C -0.153 4.153 17 C -0.140 4.140 18 C -0.229 4.229 19 C -0.033 4.033 20 C 0.008 3.992 21 N -0.395 5.395 22 O -0.064 6.064 23 H 0.049 0.951 24 H 0.083 0.917 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.246 0.754 33 H 0.183 0.817 34 H 0.208 0.792 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.182 0.818 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.944 5.455 18.888 20.052 hybrid contribution 0.010 -0.377 -0.186 0.420 sum -3.934 5.078 18.702 19.775 Atomic orbital electron populations 1.21673 0.97170 0.98800 1.00204 1.18384 0.93273 0.93016 0.90390 1.21678 0.98083 0.97937 1.00185 1.21273 1.31796 1.12245 0.91298 0.93340 1.25485 0.95078 0.95574 1.01088 1.69923 1.36983 1.23376 1.23608 0.85649 0.78106 0.78700 0.80002 1.19842 1.20704 1.20745 1.21455 0.97559 0.95358 0.83499 1.46114 1.51893 1.31631 1.05240 1.16940 0.79987 0.83156 0.82084 1.90810 1.40372 1.27168 1.86529 1.21893 1.04381 0.92854 0.96137 1.22202 1.00351 1.01133 0.90363 1.21925 1.02530 0.96178 1.02252 1.23459 1.00607 0.99026 0.80215 1.20381 0.92378 0.84544 1.01879 1.58527 1.15301 1.06026 1.59657 1.84036 1.53782 1.37539 1.31067 0.95115 0.91670 0.95960 0.96023 0.91665 0.95163 0.92994 0.93441 0.93352 0.75387 0.81667 0.79183 0.88285 0.88811 0.81813 0.83442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.08 71.98 0.58 -5.01 16 2 C 0.05 2.40 0.50 -52.93 -0.03 2.37 16 3 C -0.12 -5.65 8.08 71.98 0.58 -5.07 16 4 C -0.53 -28.29 8.01 25.60 0.21 -28.08 16 5 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 6 C 0.03 1.46 5.15 84.66 0.44 1.90 16 7 N -0.90 -48.67 9.35 21.45 0.20 -48.47 16 8 Si 0.95 42.94 29.54 68.60 2.03 44.97 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 C 0.14 6.42 4.50 86.38 0.39 6.81 16 13 N -0.70 -27.17 4.95 -467.10 -2.31 -29.49 16 14 C 0.59 22.79 7.79 86.44 0.67 23.46 16 15 O -0.57 -25.00 16.86 -4.32 -0.07 -25.08 16 16 C -0.10 -3.20 7.13 24.07 0.17 -3.03 16 17 C -0.12 -3.09 10.62 22.39 0.24 -2.85 16 18 C -0.21 -3.90 10.77 22.07 0.24 -3.67 16 19 C 0.02 0.41 6.82 24.97 0.17 0.58 16 20 C 0.14 1.72 7.31 85.56 0.63 2.35 16 21 N -0.86 -10.39 9.61 -190.00 -1.83 -12.22 16 22 O -0.17 -4.84 10.40 -5.16 -0.05 -4.90 16 23 H 0.03 1.23 6.86 -2.39 -0.02 1.21 16 24 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 25 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 3.34 6.07 -2.39 -0.01 3.33 16 28 H 0.03 1.23 6.86 -2.39 -0.02 1.21 16 29 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 30 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.41 14.86 5.92 -92.71 -0.55 14.31 16 33 H 0.17 3.95 8.06 -2.91 -0.02 3.93 16 34 H 0.19 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.37 2.54 9.08 -89.69 -0.81 1.73 16 38 H 0.35 3.52 8.98 -89.70 -0.81 2.72 16 Total: -1.00 -64.72 317.67 1.18 -63.54 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -1.07 Total: 21.88 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 4.28 Total: -10.24 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -3.94 Total: -90.18 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.13 Total: -29.97 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -64.72 1.18 -63.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315717050.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.953 kcal (2) G-P(sol) polarization free energy of solvation -64.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds