Wall clock time and date at job start Mon Mar 30 2020 04:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86789 * 120.00054 * 2 1 4 4 H 1.48510 * 109.46925 * 269.99573 * 3 2 1 5 5 H 1.48495 * 109.47590 * 30.00031 * 3 2 1 6 6 H 1.48498 * 109.47401 * 150.00086 * 3 2 1 7 7 C 1.39592 * 119.99647 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99508 * 180.02562 * 7 2 1 9 9 N 1.36121 * 120.00132 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99923 * 180.02562 * 9 7 2 11 11 O 1.21503 * 119.99892 * 359.97438 * 10 9 7 12 12 C 1.48827 * 120.00046 * 179.97438 * 10 9 7 13 13 O 1.21443 * 119.99630 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00046 * 179.97438 * 12 10 9 15 15 C 1.46498 * 119.99828 * 180.27751 * 14 12 10 16 16 H 1.08995 * 109.47013 * 324.72129 * 15 14 12 17 17 C 1.52999 * 109.47257 * 84.72116 * 15 14 12 18 18 C 1.52997 * 117.49900 * 8.62155 * 17 15 14 19 19 C 1.52995 * 117.50111 * 299.99774 * 17 15 14 20 20 C 1.53004 * 109.47065 * 204.72115 * 15 14 12 21 21 C 1.53777 * 113.61447 * 159.13342 * 20 15 14 22 22 C 1.53950 * 87.02044 * 220.04831 * 21 20 15 23 23 C 1.53782 * 113.61127 * 61.52590 * 20 15 14 24 24 H 0.96996 * 120.00096 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99759 * 359.97438 * 9 7 2 26 26 H 0.97001 * 119.99727 * 359.97438 * 14 12 10 27 27 H 1.09007 * 115.54818 * 154.32717 * 17 15 14 28 28 H 1.08998 * 117.50293 * 359.97438 * 18 17 15 29 29 H 1.09002 * 117.49968 * 145.02380 * 18 17 15 30 30 H 1.08995 * 117.49999 * 214.98157 * 19 17 15 31 31 H 1.09006 * 117.49891 * 359.97438 * 19 17 15 32 32 H 1.09004 * 112.84790 * 290.33446 * 20 15 14 33 33 H 1.08996 * 113.61684 * 334.57070 * 21 20 15 34 34 H 1.09007 * 113.61237 * 105.47151 * 21 20 15 35 35 H 1.08995 * 113.53876 * 270.81618 * 22 21 20 36 36 H 1.09002 * 113.67052 * 139.93437 * 22 21 20 37 37 H 1.08997 * 113.61393 * 254.53153 * 23 20 15 38 38 H 1.09007 * 113.61693 * 25.35249 * 23 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6176 0.0000 4 1 2.4917 2.0462 -1.4002 5 1 1.4417 2.6526 0.7000 6 1 3.5417 1.4401 0.7000 7 6 2.0080 -1.2089 0.0005 8 1 3.0880 -1.2089 0.0010 9 7 1.3274 -2.3878 0.0016 10 6 2.0012 -3.5550 0.0026 11 8 3.2163 -3.5550 0.0022 12 6 1.2571 -4.8438 0.0044 13 8 0.0426 -4.8437 0.0053 14 7 1.9309 -6.0111 0.0049 15 6 1.1984 -7.2797 0.0004 16 1 0.2882 -7.1758 0.5910 17 6 0.8333 -7.6529 -1.4377 18 6 1.4387 -6.8096 -2.5617 19 6 -0.0465 -6.6754 -2.2196 20 6 2.0760 -8.3775 0.6050 21 6 1.2808 -9.5906 1.1157 22 6 2.2457 -9.6169 2.3150 23 6 2.4695 -8.1155 2.0684 24 1 -0.4850 0.8400 -0.0004 25 1 0.3574 -2.3877 0.0023 26 1 2.9009 -6.0110 0.0038 27 1 0.6934 -8.7174 -1.6262 28 1 2.0967 -5.9888 -2.2766 29 1 1.6972 -7.3193 -3.4899 30 1 -0.7650 -7.0967 -2.9226 31 1 -0.3656 -5.7666 -1.7092 32 1 2.9188 -8.6448 -0.0325 33 1 0.2520 -9.3551 1.3881 34 1 1.3592 -10.4666 0.4717 35 1 3.1346 -10.2244 2.1452 36 1 1.7576 -9.8354 3.2647 37 1 3.5061 -7.8024 2.1925 38 1 1.7670 -7.4747 2.6015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000325457591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:30 Heat of formation + Delta-G solvation = -31.809013 kcal Electronic energy + Delta-G solvation = -20518.897318 eV Core-core repulsion = 17362.699863 eV Total energy + Delta-G solvation = -3156.197454 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.27009 -38.73949 -37.38642 -36.31033 -34.39186 -33.22882 -31.38978 -28.72117 -25.89758 -25.60472 -23.67868 -22.67902 -22.06422 -19.98284 -19.71874 -19.07753 -18.30582 -17.01006 -16.29927 -15.96919 -15.34333 -15.16631 -14.72218 -14.21459 -14.10510 -13.81271 -13.51573 -12.77833 -12.50750 -12.41914 -12.23257 -11.94585 -11.79297 -11.58360 -11.24890 -11.17212 -10.84280 -10.55522 -10.48798 -10.45208 -10.40237 -10.29473 -9.98520 -9.71756 -9.64923 -8.63333 -8.23762 -8.22290 -6.67086 -3.99283 2.44311 3.14805 3.15880 3.21141 3.39739 4.03149 4.08301 4.26797 4.50931 4.57504 4.63916 4.79568 5.04391 5.06581 5.15468 5.21417 5.24285 5.41294 5.54032 5.61360 5.69102 5.71171 5.80271 5.92489 5.93852 5.95633 6.07209 6.12653 6.20914 6.39650 6.44626 6.63502 6.88006 7.30973 7.70975 7.90859 8.33876 8.64781 8.96650 9.32179 9.85397 10.47772 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.028845 B = 0.004595 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.458150 B = 6092.749703 C = 6536.525972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.031 3.969 3 Si 0.938 3.062 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.306 4.306 8 H 0.112 0.888 9 N -0.499 5.499 10 C 0.393 3.607 11 O -0.598 6.598 12 C 0.515 3.485 13 O -0.543 6.543 14 N -0.705 5.705 15 C 0.186 3.814 16 H 0.090 0.910 17 C -0.169 4.169 18 C -0.178 4.178 19 C -0.186 4.186 20 C -0.115 4.115 21 C -0.129 4.129 22 C -0.143 4.143 23 C -0.134 4.134 24 H 0.280 0.720 25 H 0.404 0.596 26 H 0.409 0.591 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 -15.564 0.407 15.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.437 4.437 8 H 0.130 0.870 9 N -0.133 5.133 10 C 0.177 3.823 11 O -0.487 6.487 12 C 0.300 3.700 13 O -0.420 6.420 14 N -0.358 5.358 15 C 0.081 3.919 16 H 0.108 0.892 17 C -0.188 4.188 18 C -0.215 4.215 19 C -0.222 4.222 20 C -0.134 4.134 21 C -0.167 4.167 22 C -0.180 4.180 23 C -0.172 4.172 24 H 0.091 0.909 25 H 0.240 0.760 26 H 0.245 0.755 27 H 0.123 0.877 28 H 0.116 0.884 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.138 0.862 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.223 -15.402 0.423 15.457 hybrid contribution 0.211 0.727 -0.153 0.772 sum 1.434 -14.676 0.270 14.748 Atomic orbital electron populations 1.69481 1.06513 1.29342 1.45346 1.25577 0.95615 1.00448 0.95910 0.85730 0.79382 0.79716 0.78789 1.19898 1.20520 1.18910 1.19875 0.93957 0.81912 1.47909 0.87025 1.41566 1.10468 1.04241 1.57056 1.19002 0.87851 0.84279 0.91161 1.90582 1.12911 1.86640 1.58532 1.20663 0.87552 0.85928 0.75899 1.90622 1.14032 1.87993 1.49397 1.45694 1.11001 1.04378 1.74726 1.20473 0.95190 0.82278 0.93997 0.89238 1.22717 1.06308 0.96968 0.92849 1.22944 0.97246 1.02994 0.98291 1.23356 0.93073 1.02887 1.02913 1.22792 0.98989 0.95343 0.96292 1.22910 0.98816 0.97464 0.97504 1.22843 0.99620 0.97062 0.98481 1.22896 1.02166 0.96353 0.95776 0.90931 0.76021 0.75513 0.87683 0.88379 0.89549 0.89708 0.86212 0.88686 0.89840 0.91440 0.90336 0.91529 0.91253 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.23 13.03 55.53 0.72 -22.51 16 2 C 0.03 0.81 5.51 -17.40 -0.10 0.72 16 3 Si 0.94 20.07 29.56 -169.99 -5.02 15.04 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.31 -8.41 9.68 -15.14 -0.15 -8.56 16 8 H 0.11 3.14 7.15 -52.49 -0.38 2.76 16 9 N -0.50 -13.27 5.25 -11.59 -0.06 -13.33 16 10 C 0.39 9.78 7.82 -11.88 -0.09 9.69 16 11 O -0.60 -15.91 16.03 5.36 0.09 -15.82 16 12 C 0.51 10.84 6.68 -11.88 -0.08 10.76 16 13 O -0.54 -12.15 13.48 5.42 0.07 -12.07 16 14 N -0.71 -11.75 3.41 -54.44 -0.19 -11.94 16 15 C 0.19 2.55 2.18 -67.93 -0.15 2.40 16 16 H 0.09 1.38 7.42 -51.93 -0.39 0.99 16 17 C -0.17 -2.25 5.69 -90.62 -0.52 -2.76 16 18 C -0.18 -2.57 9.73 -26.73 -0.26 -2.83 16 19 C -0.19 -2.86 9.82 -26.73 -0.26 -3.12 16 20 C -0.12 -1.23 3.16 -89.81 -0.28 -1.52 16 21 C -0.13 -1.17 7.63 -25.83 -0.20 -1.37 16 22 C -0.14 -1.26 8.09 -25.83 -0.21 -1.47 16 23 C -0.13 -1.45 7.44 -25.92 -0.19 -1.64 16 24 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 25 H 0.40 10.83 7.35 -40.82 -0.30 10.53 16 26 H 0.41 6.62 8.06 -40.82 -0.33 6.29 16 27 H 0.11 1.18 8.11 -51.92 -0.42 0.76 16 28 H 0.10 1.64 6.66 -51.93 -0.35 1.29 16 29 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.12 2.26 5.00 -51.93 -0.26 2.00 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.78 7.99 -51.93 -0.41 0.36 16 34 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 316.60 15.07 4.77 4.77 Total: -1.00 -29.23 316.60 -7.44 -36.68 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: -5.34 Total: 18.88 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.48 Total: 0.31 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.48 Total: -47.78 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: 0.16 Total: -27.89 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.23 -7.44 -36.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325457591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.866 kcal (2) G-P(sol) polarization free energy of solvation -29.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds