Wall clock time and date at job start Mon Mar 30 2020 04:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86789 * 120.00054 * 2 1 4 4 H 1.48510 * 109.46925 * 269.99573 * 3 2 1 5 5 H 1.48495 * 109.47590 * 30.00031 * 3 2 1 6 6 H 1.48498 * 109.47401 * 150.00086 * 3 2 1 7 7 C 1.39592 * 119.99647 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99508 * 180.02562 * 7 2 1 9 9 N 1.36121 * 120.00132 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99923 * 180.02562 * 9 7 2 11 11 O 1.21503 * 119.99892 * 359.97438 * 10 9 7 12 12 C 1.48827 * 120.00046 * 179.97438 * 10 9 7 13 13 O 1.21443 * 119.99630 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00046 * 179.97438 * 12 10 9 15 15 C 1.46498 * 119.99828 * 180.27751 * 14 12 10 16 16 H 1.08995 * 109.47013 * 324.72129 * 15 14 12 17 17 C 1.52999 * 109.47257 * 84.72116 * 15 14 12 18 18 C 1.52997 * 117.49900 * 8.62155 * 17 15 14 19 19 C 1.52995 * 117.50111 * 299.99774 * 17 15 14 20 20 C 1.53004 * 109.47065 * 204.72115 * 15 14 12 21 21 C 1.53777 * 113.61447 * 159.13342 * 20 15 14 22 22 C 1.53950 * 87.02044 * 220.04831 * 21 20 15 23 23 C 1.53782 * 113.61127 * 61.52590 * 20 15 14 24 24 H 0.96996 * 120.00096 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99759 * 359.97438 * 9 7 2 26 26 H 0.97001 * 119.99727 * 359.97438 * 14 12 10 27 27 H 1.09007 * 115.54818 * 154.32717 * 17 15 14 28 28 H 1.08998 * 117.50293 * 359.97438 * 18 17 15 29 29 H 1.09002 * 117.49968 * 145.02380 * 18 17 15 30 30 H 1.08995 * 117.49999 * 214.98157 * 19 17 15 31 31 H 1.09006 * 117.49891 * 359.97438 * 19 17 15 32 32 H 1.09004 * 112.84790 * 290.33446 * 20 15 14 33 33 H 1.08996 * 113.61684 * 334.57070 * 21 20 15 34 34 H 1.09007 * 113.61237 * 105.47151 * 21 20 15 35 35 H 1.08995 * 113.53876 * 270.81618 * 22 21 20 36 36 H 1.09002 * 113.67052 * 139.93437 * 22 21 20 37 37 H 1.08997 * 113.61393 * 254.53153 * 23 20 15 38 38 H 1.09007 * 113.61693 * 25.35249 * 23 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6176 0.0000 4 1 2.4917 2.0462 -1.4002 5 1 1.4417 2.6526 0.7000 6 1 3.5417 1.4401 0.7000 7 6 2.0080 -1.2089 0.0005 8 1 3.0880 -1.2089 0.0010 9 7 1.3274 -2.3878 0.0016 10 6 2.0012 -3.5550 0.0026 11 8 3.2163 -3.5550 0.0022 12 6 1.2571 -4.8438 0.0044 13 8 0.0426 -4.8437 0.0053 14 7 1.9309 -6.0111 0.0049 15 6 1.1984 -7.2797 0.0004 16 1 0.2882 -7.1758 0.5910 17 6 0.8333 -7.6529 -1.4377 18 6 1.4387 -6.8096 -2.5617 19 6 -0.0465 -6.6754 -2.2196 20 6 2.0760 -8.3775 0.6050 21 6 1.2808 -9.5906 1.1157 22 6 2.2457 -9.6169 2.3150 23 6 2.4695 -8.1155 2.0684 24 1 -0.4850 0.8400 -0.0004 25 1 0.3574 -2.3877 0.0023 26 1 2.9009 -6.0110 0.0038 27 1 0.6934 -8.7174 -1.6262 28 1 2.0967 -5.9888 -2.2766 29 1 1.6972 -7.3193 -3.4899 30 1 -0.7650 -7.0967 -2.9226 31 1 -0.3656 -5.7666 -1.7092 32 1 2.9188 -8.6448 -0.0325 33 1 0.2520 -9.3551 1.3881 34 1 1.3592 -10.4666 0.4717 35 1 3.1346 -10.2244 2.1452 36 1 1.7576 -9.8354 3.2647 37 1 3.5061 -7.8024 2.1925 38 1 1.7670 -7.4747 2.6015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000325457591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:30 Heat of formation + Delta-G solvation = -50.514363 kcal Electronic energy + Delta-G solvation = -20519.708443 eV Core-core repulsion = 17362.699863 eV Total energy + Delta-G solvation = -3157.008579 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.73102 -40.14506 -38.96394 -37.66296 -36.37573 -34.74034 -33.43091 -29.94370 -27.77236 -26.49117 -24.98109 -24.09979 -23.25615 -21.42864 -20.97257 -20.44933 -20.09796 -18.71588 -17.66629 -17.57602 -16.89635 -16.41630 -16.15032 -15.84281 -15.73424 -15.15016 -14.94656 -14.56160 -14.05618 -13.68433 -13.31052 -13.26056 -12.98016 -12.89314 -12.64922 -12.58593 -12.48477 -12.18608 -12.10408 -11.74580 -11.67043 -11.31398 -11.21011 -11.12798 -10.75763 -10.28167 -10.23554 -10.00001 -8.66522 -6.11587 0.61618 1.40241 1.46356 1.54995 1.82583 2.28731 2.37835 2.89147 3.14933 3.25660 3.58425 3.71260 3.82863 3.97419 4.02563 4.07178 4.09727 4.13554 4.41605 4.56536 4.57828 4.80243 4.90591 4.91021 4.99942 5.01225 5.13433 5.14904 5.21859 5.24249 5.32731 5.36815 5.48375 5.64826 5.68345 6.18906 6.40865 6.82358 7.05013 7.28554 7.79878 8.49342 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.028845 B = 0.004595 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.458150 B = 6092.749703 C = 6536.525972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.004 4.004 3 Si 1.009 2.991 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.346 4.346 8 H 0.098 0.902 9 N -0.512 5.512 10 C 0.388 3.612 11 O -0.618 6.618 12 C 0.521 3.479 13 O -0.558 6.558 14 N -0.684 5.684 15 C 0.181 3.819 16 H 0.074 0.926 17 C -0.148 4.148 18 C -0.178 4.178 19 C -0.206 4.206 20 C -0.111 4.111 21 C -0.121 4.121 22 C -0.132 4.132 23 C -0.145 4.145 24 H 0.289 0.711 25 H 0.400 0.600 26 H 0.413 0.587 27 H 0.141 0.859 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.055 -17.329 0.103 17.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.208 4.208 3 Si 0.830 3.170 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.476 4.476 8 H 0.116 0.884 9 N -0.146 5.146 10 C 0.173 3.827 11 O -0.508 6.508 12 C 0.304 3.696 13 O -0.437 6.437 14 N -0.335 5.335 15 C 0.077 3.923 16 H 0.092 0.908 17 C -0.167 4.167 18 C -0.215 4.215 19 C -0.242 4.242 20 C -0.129 4.129 21 C -0.159 4.159 22 C -0.170 4.170 23 C -0.183 4.183 24 H 0.099 0.901 25 H 0.235 0.765 26 H 0.250 0.750 27 H 0.158 0.842 28 H 0.088 0.912 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.129 0.871 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.805 -17.207 0.121 17.302 hybrid contribution 0.023 1.191 -0.051 1.192 sum 1.828 -16.016 0.071 16.120 Atomic orbital electron populations 1.69549 1.07827 1.30778 1.45257 1.26527 0.96484 1.03435 0.94379 0.84705 0.78012 0.75076 0.79196 1.18955 1.19077 1.18800 1.19964 0.93630 0.83139 1.50846 0.88448 1.41655 1.10183 1.04825 1.57895 1.19730 0.87919 0.85394 0.89640 1.90543 1.13892 1.87354 1.58960 1.19980 0.87083 0.85849 0.76659 1.90630 1.14393 1.88114 1.50543 1.45656 1.11201 1.04230 1.72452 1.20776 0.95110 0.81513 0.94877 0.90798 1.22819 1.04035 0.98269 0.91586 1.22931 0.95926 1.02721 0.99966 1.23288 0.94159 1.02505 1.04294 1.22843 0.99240 0.94828 0.96008 1.22898 0.98372 0.97011 0.97619 1.22823 1.00191 0.95205 0.98748 1.22929 1.01524 0.97930 0.95921 0.90127 0.76544 0.75037 0.84152 0.91160 0.86961 0.87703 0.90033 0.87139 0.90246 0.89280 0.88745 0.91053 0.91434 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.66 13.03 21.77 0.28 -48.37 16 2 C 0.00 -0.21 5.51 85.14 0.47 0.26 16 3 Si 1.01 41.14 29.56 68.60 2.03 43.17 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 5 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.35 -19.70 9.68 84.35 0.82 -18.88 16 8 H 0.10 5.70 7.15 -2.91 -0.02 5.68 16 9 N -0.51 -28.45 5.25 -308.87 -1.62 -30.07 16 10 C 0.39 20.12 7.82 87.08 0.68 20.80 16 11 O -0.62 -33.92 16.03 -3.73 -0.06 -33.98 16 12 C 0.52 22.67 6.68 87.08 0.58 23.25 16 13 O -0.56 -25.91 13.48 -3.54 -0.05 -25.95 16 14 N -0.68 -22.92 3.41 -444.46 -1.51 -24.43 16 15 C 0.18 4.77 2.18 44.99 0.10 4.87 16 16 H 0.07 2.25 7.42 -2.39 -0.02 2.23 16 17 C -0.15 -3.60 5.69 -10.80 -0.06 -3.66 16 18 C -0.18 -4.91 9.73 30.59 0.30 -4.62 16 19 C -0.21 -6.18 9.82 30.59 0.30 -5.88 16 20 C -0.11 -2.09 3.16 -10.27 -0.03 -2.12 16 21 C -0.12 -1.79 7.63 31.18 0.24 -1.55 16 22 C -0.13 -1.95 8.09 31.18 0.25 -1.70 16 23 C -0.15 -2.93 7.44 31.12 0.23 -2.70 16 24 H 0.29 14.33 8.30 -92.71 -0.77 13.56 16 25 H 0.40 22.51 7.35 -92.71 -0.68 21.83 16 26 H 0.41 13.35 8.06 -92.71 -0.75 12.60 16 27 H 0.14 2.51 8.11 -2.38 -0.02 2.49 16 28 H 0.07 2.34 6.66 -2.39 -0.02 2.33 16 29 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.08 3.16 5.00 -2.38 -0.01 3.15 16 32 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 1.27 7.99 -2.39 -0.02 1.25 16 34 H 0.09 0.99 8.14 -2.38 -0.02 0.98 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.06 1.53 8.10 -2.38 -0.02 1.51 16 Total: -1.00 -65.26 316.60 2.60 -62.66 By element: Atomic # 1 Polarization: 49.26 SS G_CDS: -0.34 Total: 48.92 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 3.87 Total: 8.06 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -2.85 Total: -102.87 kcal Atomic # 8 Polarization: -59.82 SS G_CDS: -0.11 Total: -59.93 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -65.26 2.60 -62.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325457591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.142 kcal (2) G-P(sol) polarization free energy of solvation -65.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds