Wall clock time and date at job start Mon Mar 30 2020 05:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47487 * 2 1 4 4 H 1.09005 * 109.47211 * 304.89405 * 3 2 1 5 5 C 1.50692 * 109.47412 * 184.89181 * 3 2 1 6 6 O 1.21296 * 120.00027 * 240.00140 * 5 3 2 7 7 N 1.34781 * 120.00024 * 59.99937 * 5 3 2 8 8 C 1.46490 * 119.99776 * 359.72644 * 7 5 3 9 9 C 1.37101 * 119.99702 * 180.02562 * 7 5 3 10 10 H 1.07997 * 119.99897 * 338.45141 * 9 7 5 11 11 C 1.38947 * 119.99666 * 158.44801 * 9 7 5 12 12 N 1.31412 * 120.00173 * 348.00367 * 11 9 7 13 13 Si 1.86800 * 119.99794 * 167.99718 * 11 9 7 14 14 H 1.48501 * 109.46786 * 90.00389 * 13 11 9 15 15 H 1.48505 * 109.47034 * 209.99940 * 13 11 9 16 16 H 1.48489 * 109.47339 * 330.00330 * 13 11 9 17 17 C 1.50705 * 109.46908 * 64.88799 * 3 2 1 18 18 C 1.41379 * 128.00473 * 63.50715 * 17 3 2 19 19 C 1.50702 * 126.80283 * 359.97438 * 18 17 3 20 20 N 1.30176 * 106.39474 * 179.97438 * 18 17 3 21 21 O 1.20912 * 111.60619 * 0.02562 * 20 18 17 22 22 C 1.34047 * 111.56676 * 359.76190 * 21 20 18 23 23 C 1.50700 * 126.77461 * 180.28840 * 22 21 20 24 24 H 1.08994 * 109.47357 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46935 * 300.00223 * 1 2 3 26 26 H 1.08997 * 109.47020 * 59.99566 * 1 2 3 27 27 H 1.08999 * 109.46918 * 240.00559 * 2 1 3 28 28 H 1.08997 * 109.47020 * 120.00434 * 2 1 3 29 29 H 1.09005 * 109.47591 * 265.41647 * 8 7 5 30 30 H 1.09001 * 109.47459 * 25.42203 * 8 7 5 31 31 H 1.08999 * 109.47044 * 145.42073 * 8 7 5 32 32 H 0.96999 * 120.00012 * 179.97438 * 12 11 9 33 33 H 1.09001 * 109.47114 * 94.81261 * 19 18 17 34 34 H 1.09000 * 109.46960 * 214.81280 * 19 18 17 35 35 H 1.08998 * 109.47135 * 334.81803 * 19 18 17 36 36 H 1.09002 * 109.47192 * 273.53951 * 23 22 21 37 37 H 1.08990 * 109.47768 * 33.54440 * 23 22 21 38 38 H 1.09011 * 109.46693 * 153.54450 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6070 1.9811 -0.8429 5 6 3.5422 1.4442 -0.1212 6 8 4.2204 1.9440 0.7514 7 7 4.1320 0.8903 -1.1991 8 6 3.3130 0.2813 -2.2500 9 6 5.4985 0.8914 -1.3090 10 1 6.0845 1.6074 -0.7518 11 6 6.1296 -0.0286 -2.1372 12 7 5.4533 -1.0426 -2.6285 13 14 7.9393 0.1760 -2.5524 14 1 8.7623 -0.5403 -1.5449 15 1 8.2049 -0.3884 -3.9001 16 1 8.2895 1.6189 -2.5422 17 6 1.6391 2.1171 1.2866 18 6 2.0361 1.7875 2.6028 19 6 2.9615 0.6713 3.0139 20 7 1.4439 2.6391 3.3894 21 8 0.7615 3.4196 2.7673 22 6 0.8187 3.1825 1.4492 23 6 0.1090 3.9489 0.3629 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.2224 -0.7892 -2.0656 30 1 2.3222 0.7356 -2.2477 31 1 3.7851 0.4443 -3.2188 32 1 5.8938 -1.6847 -3.2069 33 1 3.9758 1.0581 3.1128 34 1 2.6342 0.2613 3.9694 35 1 2.9439 -0.1127 2.2569 36 1 -0.8916 3.5395 0.2236 37 1 0.0357 4.9985 0.6473 38 1 0.6696 3.8629 -0.5680 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337531410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:17 Heat of formation + Delta-G solvation = 26.570496 kcal Electronic energy + Delta-G solvation = -21456.688134 eV Core-core repulsion = 18303.022205 eV Total energy + Delta-G solvation = -3153.665929 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.46665 -38.99642 -35.65610 -34.67058 -33.47408 -32.60957 -31.38451 -28.47068 -28.08390 -27.01360 -26.15179 -24.28506 -22.42413 -20.97366 -19.76627 -18.85346 -17.25650 -16.90580 -16.31743 -16.12392 -14.74249 -14.63336 -14.30938 -13.86314 -13.77193 -13.21767 -13.11591 -12.97296 -12.68902 -12.59753 -12.30749 -12.01647 -11.92539 -11.72708 -11.61298 -11.29106 -11.19658 -10.96650 -10.85641 -10.46958 -10.34154 -10.21071 -10.10389 -9.28862 -9.02809 -8.79502 -8.26068 -7.70344 -6.32886 -3.88857 1.87313 2.72923 3.14746 3.23557 3.29156 3.50472 3.84311 4.12820 4.61013 4.85636 4.89469 5.06642 5.19017 5.28201 5.39749 5.42343 5.47824 5.55843 5.64055 5.76808 5.87285 5.98114 6.03673 6.04523 6.17157 6.21073 6.24620 6.31525 6.40062 6.49948 6.54440 6.78359 6.85967 7.20231 7.54889 8.10947 8.47166 8.74373 9.17721 9.40930 9.97121 10.70123 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.026343 B = 0.006120 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.648678 B = 4573.903359 C = 4882.486267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C -0.023 4.023 4 H 0.090 0.910 5 C 0.451 3.549 6 O -0.579 6.579 7 N -0.445 5.445 8 C 0.110 3.890 9 C -0.304 4.304 10 H 0.098 0.902 11 C 0.031 3.969 12 N -0.884 5.884 13 Si 0.925 3.075 14 H -0.278 1.278 15 H -0.283 1.283 16 H -0.271 1.271 17 C -0.149 4.149 18 C 0.059 3.941 19 C -0.069 4.069 20 N -0.383 5.383 21 O 0.086 5.914 22 C -0.052 4.052 23 C -0.068 4.068 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.028 0.972 31 H 0.064 0.936 32 H 0.267 0.733 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.091 2.492 0.936 11.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C -0.045 4.045 4 H 0.108 0.892 5 C 0.239 3.761 6 O -0.463 6.463 7 N -0.164 5.164 8 C -0.033 4.033 9 C -0.432 4.432 10 H 0.116 0.884 11 C -0.172 4.172 12 N -0.524 5.524 13 Si 0.751 3.249 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.195 1.195 17 C -0.153 4.153 18 C -0.100 4.100 19 C -0.127 4.127 20 N -0.092 5.092 21 O 0.023 5.977 22 C -0.115 4.115 23 C -0.125 4.125 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.715 2.771 2.523 11.351 hybrid contribution 1.063 -0.336 -1.154 1.605 sum -9.652 2.434 1.369 10.048 Atomic orbital electron populations 1.21750 0.95854 1.01299 1.01402 1.21862 0.95647 0.94781 1.04318 1.19550 0.95795 0.96437 0.92716 0.89249 1.19788 0.88113 0.85207 0.83022 1.90523 1.65017 1.50185 1.40561 1.43534 1.06366 1.50162 1.16332 1.21660 0.91244 0.97982 0.92454 1.19638 0.81045 1.15860 1.26643 0.88420 1.25296 1.00033 0.94349 0.97527 1.69986 1.36962 1.12038 1.33405 0.85956 0.82454 0.78741 0.77714 1.20359 1.20854 1.19523 1.20408 1.00714 0.98443 0.95765 1.23244 0.98712 0.98286 0.89773 1.20184 0.97756 0.93868 1.00844 1.73730 1.10102 1.04538 1.20798 1.84714 1.52145 1.44596 1.16212 1.24023 1.02604 0.98772 0.86115 1.20248 0.99636 0.99240 0.93406 0.92780 0.93242 0.92791 0.89086 0.91484 0.91701 0.95303 0.91702 0.92294 0.89359 0.91952 0.90268 0.89958 0.90234 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.73 37.16 0.36 -1.49 16 2 C -0.13 -2.06 4.96 -26.73 -0.13 -2.19 16 3 C -0.02 -0.41 1.66 -92.92 -0.15 -0.56 16 4 H 0.09 1.43 6.31 -51.93 -0.33 1.10 16 5 C 0.45 10.53 6.77 -10.99 -0.07 10.45 16 6 O -0.58 -15.44 13.72 5.54 0.08 -15.37 16 7 N -0.45 -10.91 3.02 -122.20 -0.37 -11.28 16 8 C 0.11 2.32 7.04 59.84 0.42 2.74 16 9 C -0.30 -8.26 9.31 -14.93 -0.14 -8.40 16 10 H 0.10 2.81 7.39 -52.49 -0.39 2.42 16 11 C 0.03 0.79 5.13 -17.47 -0.09 0.70 16 12 N -0.88 -22.80 10.55 55.50 0.59 -22.21 16 13 Si 0.92 20.48 29.57 -169.99 -5.03 15.45 16 14 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 17 C -0.15 -2.69 3.50 -104.42 -0.37 -3.06 16 18 C 0.06 1.13 6.66 -82.10 -0.55 0.58 16 19 C -0.07 -1.26 9.05 36.01 0.33 -0.93 16 20 N -0.38 -7.34 12.07 33.42 0.40 -6.93 16 21 O 0.09 1.49 11.20 17.16 0.19 1.68 16 22 C -0.05 -0.82 7.49 -35.30 -0.26 -1.08 16 23 C -0.07 -0.73 10.24 36.01 0.37 -0.36 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.65 7.38 -51.93 -0.38 0.26 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 1.51 4.52 -51.93 -0.23 1.27 16 28 H 0.07 1.13 5.72 -51.93 -0.30 0.84 16 29 H 0.06 1.42 6.44 -51.93 -0.33 1.08 16 30 H 0.03 0.49 5.70 -51.93 -0.30 0.20 16 31 H 0.06 1.45 7.18 -51.93 -0.37 1.08 16 32 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 33 H 0.09 1.76 7.72 -51.93 -0.40 1.36 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.44 5.74 -51.93 -0.30 1.14 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.92 7.21 -51.92 -0.37 0.55 16 LS Contribution 303.31 15.07 4.57 4.57 Total: -1.00 -30.94 303.31 -4.81 -35.75 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -4.95 Total: 1.92 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.29 Total: -3.59 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.62 Total: -40.42 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.27 Total: -13.69 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.94 -4.81 -35.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337531410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.323 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds