Wall clock time and date at job start Mon Mar 30 2020 05:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47487 * 2 1 4 4 H 1.09005 * 109.47211 * 304.89405 * 3 2 1 5 5 C 1.50692 * 109.47412 * 184.89181 * 3 2 1 6 6 O 1.21296 * 120.00027 * 240.00140 * 5 3 2 7 7 N 1.34781 * 120.00024 * 59.99937 * 5 3 2 8 8 C 1.46490 * 119.99776 * 359.72644 * 7 5 3 9 9 C 1.37101 * 119.99702 * 180.02562 * 7 5 3 10 10 H 1.07997 * 119.99897 * 338.45141 * 9 7 5 11 11 C 1.38947 * 119.99666 * 158.44801 * 9 7 5 12 12 N 1.31412 * 120.00173 * 348.00367 * 11 9 7 13 13 Si 1.86800 * 119.99794 * 167.99718 * 11 9 7 14 14 H 1.48501 * 109.46786 * 90.00389 * 13 11 9 15 15 H 1.48505 * 109.47034 * 209.99940 * 13 11 9 16 16 H 1.48489 * 109.47339 * 330.00330 * 13 11 9 17 17 C 1.50705 * 109.46908 * 64.88799 * 3 2 1 18 18 C 1.41379 * 128.00473 * 63.50715 * 17 3 2 19 19 C 1.50702 * 126.80283 * 359.97438 * 18 17 3 20 20 N 1.30176 * 106.39474 * 179.97438 * 18 17 3 21 21 O 1.20912 * 111.60619 * 0.02562 * 20 18 17 22 22 C 1.34047 * 111.56676 * 359.76190 * 21 20 18 23 23 C 1.50700 * 126.77461 * 180.28840 * 22 21 20 24 24 H 1.08994 * 109.47357 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46935 * 300.00223 * 1 2 3 26 26 H 1.08997 * 109.47020 * 59.99566 * 1 2 3 27 27 H 1.08999 * 109.46918 * 240.00559 * 2 1 3 28 28 H 1.08997 * 109.47020 * 120.00434 * 2 1 3 29 29 H 1.09005 * 109.47591 * 265.41647 * 8 7 5 30 30 H 1.09001 * 109.47459 * 25.42203 * 8 7 5 31 31 H 1.08999 * 109.47044 * 145.42073 * 8 7 5 32 32 H 0.96999 * 120.00012 * 179.97438 * 12 11 9 33 33 H 1.09001 * 109.47114 * 94.81261 * 19 18 17 34 34 H 1.09000 * 109.46960 * 214.81280 * 19 18 17 35 35 H 1.08998 * 109.47135 * 334.81803 * 19 18 17 36 36 H 1.09002 * 109.47192 * 273.53951 * 23 22 21 37 37 H 1.08990 * 109.47768 * 33.54440 * 23 22 21 38 38 H 1.09011 * 109.46693 * 153.54450 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6070 1.9811 -0.8429 5 6 3.5422 1.4442 -0.1212 6 8 4.2204 1.9440 0.7514 7 7 4.1320 0.8903 -1.1991 8 6 3.3130 0.2813 -2.2500 9 6 5.4985 0.8914 -1.3090 10 1 6.0845 1.6074 -0.7518 11 6 6.1296 -0.0286 -2.1372 12 7 5.4533 -1.0426 -2.6285 13 14 7.9393 0.1760 -2.5524 14 1 8.7623 -0.5403 -1.5449 15 1 8.2049 -0.3884 -3.9001 16 1 8.2895 1.6189 -2.5422 17 6 1.6391 2.1171 1.2866 18 6 2.0361 1.7875 2.6028 19 6 2.9615 0.6713 3.0139 20 7 1.4439 2.6391 3.3894 21 8 0.7615 3.4196 2.7673 22 6 0.8187 3.1825 1.4492 23 6 0.1090 3.9489 0.3629 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.2224 -0.7892 -2.0656 30 1 2.3222 0.7356 -2.2477 31 1 3.7851 0.4443 -3.2188 32 1 5.8938 -1.6847 -3.2069 33 1 3.9758 1.0581 3.1128 34 1 2.6342 0.2613 3.9694 35 1 2.9439 -0.1127 2.2569 36 1 -0.8916 3.5395 0.2236 37 1 0.0357 4.9985 0.6473 38 1 0.6696 3.8629 -0.5680 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337531410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:17 Heat of formation + Delta-G solvation = 7.640681 kcal Electronic energy + Delta-G solvation = -21457.508993 eV Core-core repulsion = 18303.022205 eV Total energy + Delta-G solvation = -3154.486787 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.85080 -40.72837 -37.18681 -36.51691 -34.85833 -33.95189 -33.14926 -29.82811 -29.41238 -28.45239 -27.73715 -26.09960 -23.74951 -22.42972 -21.09806 -20.50169 -18.87657 -18.63126 -17.87022 -17.65214 -16.48286 -16.18687 -15.96940 -15.52766 -15.12910 -14.61315 -14.36945 -14.17059 -14.04409 -13.84196 -13.69774 -13.56203 -13.28161 -13.17096 -13.03586 -12.96260 -12.73788 -12.59136 -12.28284 -12.14245 -12.11135 -11.68815 -11.46280 -10.94423 -10.71420 -10.29493 -9.89350 -9.63899 -8.29384 -5.93450 0.58852 1.29357 1.36722 1.41373 1.52800 2.06029 2.28210 2.31706 3.05781 3.14928 3.33212 3.64324 3.80246 3.91252 4.14156 4.20496 4.30219 4.45703 4.53115 4.60131 4.67448 4.69599 4.77430 4.82461 4.85126 4.92155 5.02216 5.09839 5.13448 5.22473 5.30231 5.31932 5.43529 5.47901 5.54258 6.13143 6.53170 7.21854 7.40144 7.52571 8.09431 8.71096 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.026343 B = 0.006120 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.648678 B = 4573.903359 C = 4882.486267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C -0.008 4.008 4 H 0.118 0.882 5 C 0.444 3.556 6 O -0.621 6.621 7 N -0.460 5.460 8 C 0.121 3.879 9 C -0.340 4.340 10 H 0.068 0.932 11 C 0.001 3.999 12 N -0.894 5.894 13 Si 0.982 3.018 14 H -0.279 1.279 15 H -0.267 1.267 16 H -0.274 1.274 17 C -0.179 4.179 18 C 0.036 3.964 19 C -0.063 4.063 20 N -0.403 5.403 21 O 0.088 5.912 22 C -0.030 4.030 23 C -0.070 4.070 24 H 0.067 0.933 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.272 0.728 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.145 2.852 -0.404 13.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.163 4.163 3 C -0.029 4.029 4 H 0.136 0.864 5 C 0.233 3.767 6 O -0.508 6.508 7 N -0.179 5.179 8 C -0.022 4.022 9 C -0.468 4.468 10 H 0.086 0.914 11 C -0.201 4.201 12 N -0.533 5.533 13 Si 0.806 3.194 14 H -0.205 1.205 15 H -0.191 1.191 16 H -0.199 1.199 17 C -0.183 4.183 18 C -0.122 4.122 19 C -0.121 4.121 20 N -0.112 5.112 21 O 0.025 5.975 22 C -0.093 4.093 23 C -0.127 4.127 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.134 0.866 37 H 0.117 0.883 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.794 3.112 1.167 13.219 hybrid contribution 1.677 -0.409 -0.701 1.864 sum -11.117 2.702 0.466 11.450 Atomic orbital electron populations 1.21680 0.92675 1.02588 1.02361 1.21835 0.98290 0.93037 1.03145 1.19452 0.91420 0.98206 0.93864 0.86427 1.20777 0.90554 0.83460 0.81873 1.90494 1.66814 1.51593 1.41898 1.43761 1.05919 1.50630 1.17610 1.21619 0.92507 0.97552 0.90514 1.19537 0.82741 1.16526 1.28015 0.91438 1.25938 1.03565 0.93763 0.96819 1.70050 1.38178 1.11976 1.33096 0.85106 0.77935 0.78363 0.77962 1.20520 1.19114 1.19885 1.20478 1.02579 1.00107 0.95157 1.23462 0.99187 0.98682 0.90867 1.20077 0.96374 0.93746 1.01855 1.73707 1.10939 1.05072 1.21520 1.84682 1.51608 1.44020 1.17146 1.24870 1.00930 0.97404 0.86145 1.20584 1.00724 0.99915 0.91508 0.91438 0.93596 0.90386 0.89688 0.93286 0.92745 0.91017 0.93430 0.91783 0.92048 0.89794 0.90867 0.86598 0.88255 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.73 71.98 0.70 -2.27 16 2 C -0.13 -3.81 4.96 30.60 0.15 -3.66 16 3 C -0.01 -0.26 1.66 -12.29 -0.02 -0.28 16 4 H 0.12 3.34 6.31 -2.38 -0.02 3.33 16 5 C 0.44 20.98 6.77 87.65 0.59 21.57 16 6 O -0.62 -34.46 13.72 -3.08 -0.04 -34.50 16 7 N -0.46 -22.88 3.02 -658.91 -1.99 -24.87 16 8 C 0.12 4.99 7.04 127.77 0.90 5.89 16 9 C -0.34 -19.04 9.31 84.04 0.78 -18.26 16 10 H 0.07 4.10 7.39 -2.91 -0.02 4.07 16 11 C 0.00 0.05 5.13 84.93 0.44 0.49 16 12 N -0.89 -46.00 10.55 21.66 0.23 -45.77 16 13 Si 0.98 42.26 29.57 68.60 2.03 44.28 16 14 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 15 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 17 C -0.18 -6.24 3.50 -19.74 -0.07 -6.31 16 18 C 0.04 1.39 6.66 43.58 0.29 1.68 16 19 C -0.06 -2.39 9.05 71.24 0.64 -1.75 16 20 N -0.40 -15.32 12.07 -49.57 -0.60 -15.91 16 21 O 0.09 2.91 11.20 71.58 0.80 3.71 16 22 C -0.03 -0.86 7.49 25.04 0.19 -0.68 16 23 C -0.07 -1.20 10.24 71.24 0.73 -0.47 16 24 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 25 H 0.04 1.05 7.38 -2.39 -0.02 1.03 16 26 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.08 2.67 4.52 -2.39 -0.01 2.66 16 28 H 0.05 1.65 5.72 -2.39 -0.01 1.64 16 29 H 0.05 2.35 6.44 -2.38 -0.02 2.34 16 30 H 0.07 2.28 5.70 -2.39 -0.01 2.27 16 31 H 0.05 2.10 7.18 -2.39 -0.02 2.08 16 32 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 33 H 0.06 2.62 7.72 -2.39 -0.02 2.60 16 34 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.07 2.80 5.74 -2.39 -0.01 2.78 16 36 H 0.12 1.29 8.14 -2.39 -0.02 1.28 16 37 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.10 1.56 7.21 -2.38 -0.02 1.54 16 Total: -1.00 -69.75 303.31 6.83 -62.92 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 1.08 Total: 14.18 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 5.33 Total: -4.04 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -2.36 Total: -86.56 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: 0.76 Total: -30.79 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -69.75 6.83 -62.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337531410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.562 kcal (2) G-P(sol) polarization free energy of solvation -69.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds