Wall clock time and date at job start Mon Mar 30 2020 04:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 119.99911 * 2 1 4 4 H 1.48511 * 109.46885 * 269.99620 * 3 2 1 5 5 H 1.48495 * 109.47475 * 29.99676 * 3 2 1 6 6 H 1.48501 * 109.47376 * 150.00119 * 3 2 1 7 7 C 1.38950 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00576 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00378 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99732 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00128 * 180.02562 * 10 9 7 13 13 N 1.46502 * 109.46936 * 179.97438 * 12 10 9 14 14 C 1.34774 * 119.99980 * 179.97438 * 13 12 10 15 15 O 1.21281 * 119.99912 * 0.02562 * 14 13 12 16 16 C 1.50707 * 120.00038 * 180.02562 * 14 13 12 17 17 H 1.08992 * 115.60713 * 34.09170 * 16 14 13 18 18 C 1.52303 * 117.53564 * 180.02562 * 16 14 13 19 19 H 1.09000 * 115.29261 * 0.56800 * 18 16 14 20 20 C 1.52073 * 119.83678 * 217.19590 * 18 16 14 21 21 C 1.52879 * 110.51262 * 310.44727 * 20 18 16 22 22 C 1.53298 * 108.58912 * 305.10842 * 21 20 18 23 23 C 1.52882 * 108.73074 * 74.35359 * 22 21 20 24 24 C 1.52067 * 60.63994 * 107.37526 * 18 16 14 25 25 H 1.09004 * 117.25268 * 252.86502 * 24 18 16 26 26 H 0.97001 * 120.00129 * 359.97438 * 1 2 3 27 27 H 0.97005 * 119.99808 * 359.97438 * 9 7 2 28 28 H 1.08993 * 109.47141 * 60.00187 * 12 10 9 29 29 H 1.08996 * 109.47012 * 299.99887 * 12 10 9 30 30 H 0.97001 * 120.00045 * 0.02562 * 13 12 10 31 31 H 1.08994 * 109.27163 * 190.17757 * 20 18 16 32 32 H 1.09004 * 109.26519 * 70.71071 * 20 18 16 33 33 H 1.09005 * 109.61338 * 185.38057 * 21 20 18 34 34 H 1.08999 * 109.76477 * 64.92910 * 21 20 18 35 35 H 1.09002 * 109.61851 * 194.17366 * 22 21 20 36 36 H 1.08998 * 109.62050 * 314.53609 * 22 21 20 37 37 H 1.09000 * 109.35452 * 65.77361 * 23 22 21 38 38 H 1.08997 * 109.35636 * 185.35557 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4002 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9972 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2437 -4.8630 0.0022 13 7 2.1958 -5.9765 0.0014 14 6 1.7465 -7.2471 0.0023 15 8 0.5541 -7.4688 0.0032 16 6 2.7259 -8.3926 0.0021 17 1 3.6510 -8.2215 0.5523 18 6 2.1570 -9.8054 0.0026 19 1 1.0689 -9.8692 -0.0068 20 6 2.8493 -10.8996 0.8000 21 6 4.3466 -10.9213 0.4918 22 6 4.5316 -11.0589 -1.0238 23 6 4.1973 -9.7205 -1.6827 24 6 2.8022 -9.2618 -1.2626 25 1 2.1398 -8.9998 -2.0877 26 1 -0.4850 0.8400 0.0004 27 1 0.3534 -2.3906 0.0024 28 1 0.6168 -4.9209 -0.8875 29 1 0.6175 -4.9205 0.8924 30 1 3.1494 -5.7992 0.0011 31 1 2.4145 -11.8645 0.5395 32 1 2.7039 -10.7158 1.8645 33 1 4.8116 -11.7687 0.9957 34 1 4.8068 -9.9944 0.8340 35 1 5.5651 -11.3270 -1.2434 36 1 3.8641 -11.8315 -1.4053 37 1 4.9286 -8.9734 -1.3743 38 1 4.2331 -9.8324 -2.7663 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344179632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:35 Heat of formation + Delta-G solvation = -74.022000 kcal Electronic energy + Delta-G solvation = -19604.303597 eV Core-core repulsion = 16446.275650 eV Total energy + Delta-G solvation = -3158.027947 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.44657 -38.78309 -37.83391 -34.44779 -33.64661 -33.23656 -31.38792 -30.98692 -28.11614 -25.49327 -24.32562 -22.73087 -22.12705 -20.02003 -19.54325 -18.55436 -18.06076 -17.50895 -15.87680 -15.58852 -15.24064 -15.15860 -14.55728 -14.29875 -14.21952 -14.09953 -13.85585 -13.46663 -13.32126 -12.52614 -12.37688 -12.18912 -11.94130 -11.90760 -11.64029 -11.33473 -11.13367 -11.07629 -10.49478 -10.46477 -10.32636 -10.07307 -9.88953 -9.64384 -9.56216 -8.77570 -8.63874 -8.10932 -6.52166 -3.94251 2.64755 3.11194 3.21135 3.25237 3.33776 3.71351 3.76405 4.10617 4.49119 4.53506 4.55527 4.78359 4.86824 4.90143 4.99239 5.15132 5.16477 5.21433 5.34054 5.38279 5.49038 5.70800 5.73540 5.80407 5.89013 5.93526 5.95937 6.02711 6.04778 6.07088 6.12125 6.21920 6.70407 7.45313 7.84706 7.91396 8.43559 8.49348 9.03849 9.38541 9.86472 10.64772 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.044912 B = 0.003196 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.287492 B = 8758.708121 C = 9096.476076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.597 6.597 12 C 0.109 3.891 13 N -0.703 5.703 14 C 0.540 3.460 15 O -0.553 6.553 16 C -0.188 4.188 17 H 0.123 0.877 18 C -0.106 4.106 19 H 0.113 0.887 20 C -0.089 4.089 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.092 4.092 24 C -0.116 4.116 25 H 0.106 0.894 26 H 0.274 0.726 27 H 0.396 0.604 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.411 0.589 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.528 -19.172 -0.820 19.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.484 6.484 12 C -0.019 4.019 13 N -0.356 5.356 14 C 0.326 3.674 15 O -0.432 6.432 16 C -0.209 4.209 17 H 0.141 0.859 18 C -0.125 4.125 19 H 0.131 0.869 20 C -0.126 4.126 21 C -0.162 4.162 22 C -0.156 4.156 23 C -0.130 4.130 24 C -0.135 4.135 25 H 0.125 0.875 26 H 0.084 0.916 27 H 0.230 0.770 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.249 0.751 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.336 -19.095 -0.811 19.844 hybrid contribution 0.132 1.206 0.036 1.213 sum 5.469 -17.890 -0.776 18.723 Atomic orbital electron populations 1.69613 1.06028 1.28542 1.49317 1.25328 0.95666 0.99946 0.96776 0.85809 0.79233 0.80466 0.78499 1.20253 1.20785 1.19298 1.19735 0.93470 0.82008 1.48272 0.87671 1.41799 1.09482 1.04477 1.62626 1.19747 0.88296 0.84997 0.85584 1.90494 1.13710 1.86831 1.57347 1.20954 0.91932 0.85843 1.03179 1.45639 1.11586 1.04483 1.73881 1.19637 0.88623 0.83218 0.75937 1.90666 1.16724 1.84912 1.50865 1.22442 1.01511 0.91375 1.05589 0.85916 1.21892 1.00465 0.91804 0.98331 0.86880 1.20880 0.94872 0.97357 0.99476 1.21645 0.96233 1.02080 0.96285 1.21563 1.01210 0.97389 0.95447 1.21113 0.94130 0.97229 1.00495 1.22308 0.98785 1.01195 0.91220 0.87542 0.91574 0.77035 0.89921 0.89881 0.75067 0.91079 0.91281 0.91741 0.91672 0.91869 0.91649 0.91184 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.00 13.05 55.50 0.72 -23.28 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.31 -8.35 9.68 -14.93 -0.14 -8.49 16 8 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.55 -13.74 5.29 -10.96 -0.06 -13.80 16 10 C 0.43 9.94 7.85 -10.98 -0.09 9.85 16 11 O -0.60 -15.41 15.24 5.55 0.08 -15.33 16 12 C 0.11 2.05 6.15 -5.19 -0.03 2.02 16 13 N -0.70 -12.06 5.53 -61.47 -0.34 -12.40 16 14 C 0.54 8.79 7.62 -10.98 -0.08 8.71 16 15 O -0.55 -10.64 16.17 5.56 0.09 -10.55 16 16 C -0.19 -2.32 5.33 -91.78 -0.49 -2.81 16 17 H 0.12 1.35 7.27 -51.93 -0.38 0.97 16 18 C -0.11 -1.16 5.59 -91.92 -0.51 -1.68 16 19 H 0.11 1.42 7.51 -51.93 -0.39 1.03 16 20 C -0.09 -0.75 5.93 -27.27 -0.16 -0.91 16 21 C -0.12 -0.94 5.70 -26.64 -0.15 -1.10 16 22 C -0.12 -0.87 5.92 -26.64 -0.16 -1.03 16 23 C -0.09 -0.79 5.85 -26.92 -0.16 -0.95 16 24 C -0.12 -1.24 5.89 -90.88 -0.54 -1.78 16 25 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 26 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.40 9.53 7.90 -40.82 -0.32 9.21 16 28 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.41 6.93 7.44 -40.82 -0.30 6.62 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.52 7.13 -51.93 -0.37 0.15 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.47 8.05 -51.93 -0.42 0.05 16 37 H 0.07 0.61 8.06 -51.93 -0.42 0.19 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 317.11 15.07 4.78 4.78 Total: -1.00 -30.81 317.11 -7.85 -38.65 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -5.49 Total: 13.95 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -2.61 Total: 2.42 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.33 Total: -49.48 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: 0.17 Total: -25.88 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.81 -7.85 -38.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344179632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.368 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds