Wall clock time and date at job start Mon Mar 30 2020 04:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 119.99911 * 2 1 4 4 H 1.48511 * 109.46885 * 269.99620 * 3 2 1 5 5 H 1.48495 * 109.47475 * 29.99676 * 3 2 1 6 6 H 1.48501 * 109.47376 * 150.00119 * 3 2 1 7 7 C 1.38950 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00576 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00378 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99732 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00128 * 180.02562 * 10 9 7 13 13 N 1.46502 * 109.46936 * 179.97438 * 12 10 9 14 14 C 1.34774 * 119.99980 * 179.97438 * 13 12 10 15 15 O 1.21281 * 119.99912 * 0.02562 * 14 13 12 16 16 C 1.50707 * 120.00038 * 180.02562 * 14 13 12 17 17 H 1.08992 * 115.60713 * 34.09170 * 16 14 13 18 18 C 1.52303 * 117.53564 * 180.02562 * 16 14 13 19 19 H 1.09000 * 115.29261 * 0.56800 * 18 16 14 20 20 C 1.52073 * 119.83678 * 217.19590 * 18 16 14 21 21 C 1.52879 * 110.51262 * 310.44727 * 20 18 16 22 22 C 1.53298 * 108.58912 * 305.10842 * 21 20 18 23 23 C 1.52882 * 108.73074 * 74.35359 * 22 21 20 24 24 C 1.52067 * 60.63994 * 107.37526 * 18 16 14 25 25 H 1.09004 * 117.25268 * 252.86502 * 24 18 16 26 26 H 0.97001 * 120.00129 * 359.97438 * 1 2 3 27 27 H 0.97005 * 119.99808 * 359.97438 * 9 7 2 28 28 H 1.08993 * 109.47141 * 60.00187 * 12 10 9 29 29 H 1.08996 * 109.47012 * 299.99887 * 12 10 9 30 30 H 0.97001 * 120.00045 * 0.02562 * 13 12 10 31 31 H 1.08994 * 109.27163 * 190.17757 * 20 18 16 32 32 H 1.09004 * 109.26519 * 70.71071 * 20 18 16 33 33 H 1.09005 * 109.61338 * 185.38057 * 21 20 18 34 34 H 1.08999 * 109.76477 * 64.92910 * 21 20 18 35 35 H 1.09002 * 109.61851 * 194.17366 * 22 21 20 36 36 H 1.08998 * 109.62050 * 314.53609 * 22 21 20 37 37 H 1.09000 * 109.35452 * 65.77361 * 23 22 21 38 38 H 1.08997 * 109.35636 * 185.35557 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4002 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9972 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2437 -4.8630 0.0022 13 7 2.1958 -5.9765 0.0014 14 6 1.7465 -7.2471 0.0023 15 8 0.5541 -7.4688 0.0032 16 6 2.7259 -8.3926 0.0021 17 1 3.6510 -8.2215 0.5523 18 6 2.1570 -9.8054 0.0026 19 1 1.0689 -9.8692 -0.0068 20 6 2.8493 -10.8996 0.8000 21 6 4.3466 -10.9213 0.4918 22 6 4.5316 -11.0589 -1.0238 23 6 4.1973 -9.7205 -1.6827 24 6 2.8022 -9.2618 -1.2626 25 1 2.1398 -8.9998 -2.0877 26 1 -0.4850 0.8400 0.0004 27 1 0.3534 -2.3906 0.0024 28 1 0.6168 -4.9209 -0.8875 29 1 0.6175 -4.9205 0.8924 30 1 3.1494 -5.7992 0.0011 31 1 2.4145 -11.8645 0.5395 32 1 2.7039 -10.7158 1.8645 33 1 4.8116 -11.7687 0.9957 34 1 4.8068 -9.9944 0.8340 35 1 5.5651 -11.3270 -1.2434 36 1 3.8641 -11.8315 -1.4053 37 1 4.9286 -8.9734 -1.3743 38 1 4.2331 -9.8324 -2.7663 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344179632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:34 Heat of formation + Delta-G solvation = -94.526789 kcal Electronic energy + Delta-G solvation = -19605.192752 eV Core-core repulsion = 16446.275650 eV Total energy + Delta-G solvation = -3158.917101 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.54826 -40.35965 -39.24631 -36.27891 -35.31316 -34.01776 -33.39819 -31.66570 -29.69265 -26.94946 -25.72346 -23.41751 -23.15567 -21.43416 -21.13928 -20.09977 -19.37806 -18.70537 -17.44725 -17.02248 -16.74388 -16.62301 -16.09365 -15.72768 -15.49923 -15.03368 -14.82628 -14.75466 -14.49173 -13.97722 -13.60835 -13.56531 -13.23366 -13.11965 -12.92183 -12.70241 -12.47908 -12.13482 -12.01224 -11.75207 -11.59192 -11.23286 -11.07524 -10.73571 -10.64420 -10.56867 -10.23457 -10.10867 -8.53142 -6.03755 1.34724 1.41140 1.41857 1.54667 1.87701 1.97044 2.30083 2.78052 3.08578 3.13879 3.57885 3.70880 3.75742 4.03028 4.03807 4.19396 4.21435 4.35559 4.37747 4.39149 4.43085 4.64761 4.70392 4.85614 4.97439 5.07221 5.12669 5.24015 5.27296 5.34866 5.36124 5.37071 5.45739 5.55954 5.89205 6.42995 6.50558 7.00874 7.13195 7.41196 7.91134 8.63842 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.044912 B = 0.003196 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.287492 B = 8758.708121 C = 9096.476076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.339 4.339 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.432 3.568 11 O -0.623 6.623 12 C 0.120 3.880 13 N -0.704 5.704 14 C 0.539 3.461 15 O -0.585 6.585 16 C -0.198 4.198 17 H 0.139 0.861 18 C -0.100 4.100 19 H 0.093 0.907 20 C -0.086 4.086 21 C -0.124 4.124 22 C -0.116 4.116 23 C -0.091 4.091 24 C -0.107 4.107 25 H 0.095 0.905 26 H 0.280 0.720 27 H 0.399 0.601 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.414 0.586 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.530 -20.079 -0.871 21.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.219 3.781 11 O -0.511 6.511 12 C -0.007 4.007 13 N -0.357 5.357 14 C 0.328 3.672 15 O -0.466 6.466 16 C -0.219 4.219 17 H 0.157 0.843 18 C -0.119 4.119 19 H 0.112 0.888 20 C -0.123 4.123 21 C -0.161 4.161 22 C -0.153 4.153 23 C -0.129 4.129 24 C -0.126 4.126 25 H 0.113 0.887 26 H 0.090 0.910 27 H 0.233 0.767 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.252 0.748 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.334 -20.022 -0.865 21.018 hybrid contribution -0.216 1.431 0.038 1.448 sum 6.117 -18.591 -0.827 19.589 Atomic orbital electron populations 1.69679 1.07064 1.29709 1.49189 1.26151 0.96542 1.02745 0.95673 0.84853 0.77927 0.76356 0.78763 1.19492 1.19600 1.19370 1.19756 0.93001 0.83524 1.50512 0.89520 1.41849 1.09583 1.04624 1.63341 1.20384 0.88123 0.85873 0.83674 1.90469 1.15111 1.87516 1.58043 1.20776 0.91796 0.84125 1.04043 1.45679 1.11346 1.04460 1.74189 1.20292 0.88882 0.83502 0.74565 1.90646 1.18368 1.85294 1.52322 1.22450 1.01286 0.90472 1.07685 0.84302 1.21955 0.99683 0.91497 0.98778 0.88849 1.20916 0.95574 0.96802 0.99045 1.21658 0.95296 1.02579 0.96606 1.21563 1.02154 0.96514 0.95091 1.21158 0.92423 0.98061 1.01225 1.22412 0.99939 0.99833 0.90367 0.88710 0.91012 0.76727 0.89004 0.88957 0.74778 0.89785 0.91164 0.90147 0.92119 0.90457 0.91295 0.91054 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.96 13.05 21.66 0.28 -48.67 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 3 Si 1.00 41.80 29.55 68.60 2.03 43.83 16 4 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.34 -18.79 9.68 84.04 0.81 -17.97 16 8 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 9 N -0.56 -28.40 5.29 -306.98 -1.62 -30.03 16 10 C 0.43 20.30 7.85 87.66 0.69 20.99 16 11 O -0.62 -32.57 15.24 -3.06 -0.05 -32.61 16 12 C 0.12 4.55 6.15 85.63 0.53 5.08 16 13 N -0.70 -24.03 5.53 -466.79 -2.58 -26.61 16 14 C 0.54 17.48 7.62 87.66 0.67 18.14 16 15 O -0.59 -22.66 16.17 -3.03 -0.05 -22.71 16 16 C -0.20 -4.72 5.33 -11.55 -0.06 -4.78 16 17 H 0.14 2.85 7.27 -2.39 -0.02 2.83 16 18 C -0.10 -2.10 5.59 -11.64 -0.07 -2.16 16 19 H 0.09 2.34 7.51 -2.39 -0.02 2.32 16 20 C -0.09 -1.29 5.93 30.25 0.18 -1.11 16 21 C -0.12 -1.54 5.70 30.65 0.17 -1.36 16 22 C -0.12 -1.38 5.92 30.65 0.18 -1.19 16 23 C -0.09 -1.37 5.85 30.47 0.18 -1.19 16 24 C -0.11 -2.16 5.89 -10.96 -0.06 -2.23 16 25 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 26 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 27 H 0.40 19.50 7.90 -92.70 -0.73 18.77 16 28 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 29 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 30 H 0.41 13.86 7.44 -92.71 -0.69 13.17 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 0.77 8.14 -2.38 -0.02 0.76 16 34 H 0.06 0.82 7.13 -2.39 -0.02 0.80 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 0.79 8.05 -2.39 -0.02 0.77 16 37 H 0.07 1.08 8.06 -2.39 -0.02 1.06 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -65.59 317.11 1.36 -64.23 By element: Atomic # 1 Polarization: 40.79 SS G_CDS: -0.34 Total: 40.45 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 3.69 Total: 12.13 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -3.92 Total: -105.31 kcal Atomic # 8 Polarization: -55.23 SS G_CDS: -0.10 Total: -55.32 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -65.59 1.36 -64.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344179632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.301 kcal (2) G-P(sol) polarization free energy of solvation -65.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds