Wall clock time and date at job start Mon Mar 30 2020 04:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86799 * 120.00126 * 2 1 4 4 H 1.48500 * 109.46856 * 239.99933 * 3 2 1 5 5 H 1.48502 * 109.46867 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46862 * 119.99813 * 3 2 1 7 7 C 1.40053 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00261 * 180.02562 * 7 2 1 9 9 C 1.46379 * 119.99878 * 359.97438 * 7 2 1 10 10 O 1.21686 * 120.00040 * 5.23810 * 9 7 2 11 11 N 1.34773 * 119.99566 * 185.23494 * 9 7 2 12 12 C 1.46973 * 120.59203 * 174.82341 * 11 9 7 13 13 C 1.53370 * 108.63259 * 235.25102 * 12 11 9 14 14 N 1.46974 * 108.63212 * 310.57140 * 13 12 11 15 15 C 1.34781 * 120.59147 * 235.20421 * 14 13 12 16 16 O 1.21279 * 119.99856 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99779 * 179.97438 * 15 14 13 18 18 C 1.53776 * 113.61335 * 277.50160 * 17 15 14 19 19 C 1.53786 * 87.07969 * 220.01822 * 18 17 15 20 20 C 1.53779 * 113.61167 * 180.02562 * 17 15 14 21 21 C 1.46959 * 118.81347 * 55.48149 * 14 13 12 22 22 C 1.46965 * 120.59803 * 354.84012 * 11 9 7 23 23 H 0.97002 * 119.99941 * 0.02562 * 1 2 3 24 24 H 1.08992 * 109.61321 * 115.50528 * 12 11 9 25 25 H 1.09005 * 109.60711 * 354.98912 * 12 11 9 26 26 H 1.09000 * 109.61294 * 190.83051 * 13 12 11 27 27 H 1.08998 * 109.61753 * 70.31750 * 13 12 11 28 28 H 1.09004 * 112.90372 * 48.74959 * 17 15 14 29 29 H 1.08996 * 113.61978 * 334.56336 * 18 17 15 30 30 H 1.08996 * 113.61360 * 105.47497 * 18 17 15 31 31 H 1.08998 * 113.61209 * 270.88893 * 19 18 17 32 32 H 1.08997 * 113.69227 * 139.99042 * 19 18 17 33 33 H 1.09004 * 113.60847 * 254.52997 * 20 17 15 34 34 H 1.08994 * 113.61761 * 25.42955 * 20 17 15 35 35 H 1.09005 * 109.61049 * 64.26272 * 21 14 13 36 36 H 1.08993 * 109.61219 * 184.77548 * 21 14 13 37 37 H 1.08994 * 109.61174 * 244.49427 * 22 11 9 38 38 H 1.08990 * 109.60707 * 5.01165 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2757 2.7464 -0.0006 6 1 3.0945 1.6963 1.2126 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2130 0.0010 9 6 1.2750 -2.4806 0.0017 10 8 0.0620 -2.4828 -0.0941 11 7 1.9448 -3.6452 0.1087 12 6 1.2186 -4.9177 0.2251 13 6 1.6962 -5.6404 1.4907 14 7 3.1658 -5.6608 1.4935 15 6 3.8355 -6.8255 1.6014 16 8 3.2253 -7.8692 1.6970 17 6 5.3425 -6.8308 1.6023 18 6 5.9594 -6.7786 0.1947 19 6 7.0019 -7.7901 0.6996 20 6 5.9534 -8.2361 1.7319 21 6 3.8920 -4.3880 1.3826 22 6 3.4143 -3.6656 0.1114 23 1 -0.4850 0.8401 -0.0004 24 1 1.4225 -5.5365 -0.6486 25 1 0.1485 -4.7229 0.2970 26 1 1.3163 -6.6621 1.4940 27 1 1.3361 -5.1108 2.3726 28 1 5.7690 -6.1035 2.2932 29 1 5.3071 -7.1755 -0.5831 30 1 6.3821 -5.8070 -0.0610 31 1 7.8820 -7.3251 1.1438 32 1 7.2527 -8.5612 -0.0288 33 1 6.3711 -8.4413 2.7176 34 1 5.2993 -9.0313 1.3743 35 1 3.6845 -3.7710 2.2570 36 1 4.9623 -4.5821 1.3145 37 1 3.7744 -4.1953 -0.7704 38 1 3.7942 -2.6440 0.1082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348588409.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:45 Heat of formation + Delta-G solvation = -42.029725 kcal Electronic energy + Delta-G solvation = -20801.248930 eV Core-core repulsion = 17644.608272 eV Total energy + Delta-G solvation = -3156.640658 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.45430 -38.42024 -37.22652 -35.79805 -33.04958 -32.49771 -31.11444 -27.75465 -26.83677 -25.76745 -25.54613 -23.19606 -22.12720 -20.43973 -19.37725 -18.38135 -17.48731 -16.24502 -16.00246 -15.68355 -15.41897 -14.84686 -14.51942 -14.35397 -14.12709 -13.97525 -13.15549 -12.80608 -12.69549 -12.46695 -12.13364 -11.95078 -11.68031 -11.42134 -11.26747 -11.20102 -11.01019 -10.94065 -10.74742 -10.65937 -10.51766 -10.30192 -10.11211 -9.47364 -8.93915 -8.62335 -7.67910 -7.27305 -6.27559 -4.73816 2.74593 3.09653 3.13861 3.16310 3.17603 4.01523 4.37816 4.44713 4.47198 4.48758 4.55342 4.67750 4.91602 5.29363 5.33160 5.38977 5.53240 5.53911 5.57813 5.63082 5.65546 5.73375 5.81125 5.93226 5.93705 5.99196 6.07615 6.26034 6.28108 6.35099 6.51265 6.75769 7.36673 7.47483 7.61357 8.01841 8.23537 8.33945 8.93545 9.32316 10.48601 10.66972 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.030099 B = 0.004923 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.030877 B = 5686.248702 C = 6358.894203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.073 0.927 9 C 0.559 3.441 10 O -0.575 6.575 11 N -0.643 5.643 12 C 0.109 3.891 13 C 0.098 3.902 14 N -0.603 5.603 15 C 0.521 3.479 16 O -0.552 6.552 17 C -0.138 4.138 18 C -0.122 4.122 19 C -0.142 4.142 20 C -0.118 4.118 21 C 0.090 3.910 22 C 0.109 3.891 23 H 0.270 0.730 24 H 0.045 0.955 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.802 -9.181 2.574 16.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.458 6.458 11 N -0.382 5.382 12 C -0.016 4.016 13 C -0.026 4.026 14 N -0.336 5.336 15 C 0.310 3.690 16 O -0.431 6.431 17 C -0.159 4.159 18 C -0.160 4.160 19 C -0.179 4.179 20 C -0.155 4.155 21 C -0.034 4.034 22 C -0.016 4.016 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.086 0.914 28 H 0.129 0.871 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 12.582 -9.594 2.562 16.028 hybrid contribution 0.528 0.952 0.083 1.092 sum 13.110 -8.642 2.646 15.923 Atomic orbital electron populations 1.69996 1.07105 1.27561 1.34819 1.25727 0.94620 1.00321 0.92546 0.86443 0.79869 0.81066 0.79466 1.19205 1.20515 1.19222 1.20906 0.93460 0.89186 1.54650 0.90918 1.18287 0.86945 0.82109 0.76156 1.90600 1.14394 1.85927 1.54846 1.48185 1.04415 1.05945 1.79605 1.21497 0.99102 0.86129 0.94910 1.22087 0.79114 1.01910 0.99442 1.48116 1.07259 1.06532 1.71655 1.20513 0.89719 0.83101 0.75700 1.90639 1.69950 1.31563 1.50948 1.22775 0.91957 1.00803 1.00400 1.22833 0.97830 1.00456 0.94889 1.22826 0.96974 0.99105 0.99018 1.22790 0.97325 0.95710 0.99717 1.22401 0.96007 0.84576 1.00402 1.21876 0.83319 1.01796 0.94628 0.91918 0.93638 0.88664 0.89052 0.91372 0.87080 0.89691 0.90482 0.89957 0.91115 0.91252 0.88826 0.90804 0.89683 0.93497 0.87659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.34 11.84 55.55 0.66 -21.68 16 2 C 0.09 2.36 5.50 -17.36 -0.10 2.26 16 3 Si 0.91 19.21 29.56 -169.99 -5.02 14.19 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.55 -14.55 8.88 -35.63 -0.32 -14.87 16 8 H 0.07 1.72 5.63 -52.49 -0.30 1.43 16 9 C 0.56 15.36 7.61 -12.99 -0.10 15.26 16 10 O -0.58 -18.20 14.47 5.20 0.08 -18.13 16 11 N -0.64 -14.08 2.95 -173.87 -0.51 -14.60 16 12 C 0.11 2.14 6.58 -3.59 -0.02 2.11 16 13 C 0.10 1.68 6.59 -3.59 -0.02 1.66 16 14 N -0.60 -9.38 2.94 -172.21 -0.51 -9.89 16 15 C 0.52 7.89 7.22 -10.98 -0.08 7.81 16 16 O -0.55 -10.13 15.30 5.56 0.09 -10.04 16 17 C -0.14 -1.52 2.72 -90.96 -0.25 -1.77 16 18 C -0.12 -1.17 7.25 -25.92 -0.19 -1.36 16 19 C -0.14 -1.16 8.08 -25.93 -0.21 -1.37 16 20 C -0.12 -1.19 7.40 -25.94 -0.19 -1.39 16 21 C 0.09 1.26 6.51 -3.37 -0.02 1.24 16 22 C 0.11 1.86 6.52 -3.36 -0.02 1.84 16 23 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.10 2.07 7.02 -51.93 -0.36 1.70 16 26 H 0.09 1.54 6.99 -51.93 -0.36 1.18 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.11 1.03 7.42 -51.93 -0.39 0.65 16 29 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 30 H 0.08 0.64 8.01 -51.93 -0.42 0.22 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.12 7.43 -51.93 -0.39 0.73 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 0.90 5.48 -51.93 -0.28 0.62 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.11 1.83 5.29 -51.93 -0.27 1.55 16 LS Contribution 305.92 15.07 4.61 4.61 Total: -1.00 -34.24 305.92 -7.42 -41.66 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.28 Total: 2.43 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: -1.52 Total: 11.44 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.36 Total: -46.17 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: 0.16 Total: -28.17 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.24 -7.42 -41.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348588409.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.370 kcal (2) G-P(sol) polarization free energy of solvation -34.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds