Wall clock time and date at job start Mon Mar 30 2020 04:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86799 * 120.00126 * 2 1 4 4 H 1.48500 * 109.46856 * 239.99933 * 3 2 1 5 5 H 1.48502 * 109.46867 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46862 * 119.99813 * 3 2 1 7 7 C 1.40053 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00261 * 180.02562 * 7 2 1 9 9 C 1.46379 * 119.99878 * 359.97438 * 7 2 1 10 10 O 1.21686 * 120.00040 * 5.23810 * 9 7 2 11 11 N 1.34773 * 119.99566 * 185.23494 * 9 7 2 12 12 C 1.46973 * 120.59203 * 174.82341 * 11 9 7 13 13 C 1.53370 * 108.63259 * 235.25102 * 12 11 9 14 14 N 1.46974 * 108.63212 * 310.57140 * 13 12 11 15 15 C 1.34781 * 120.59147 * 235.20421 * 14 13 12 16 16 O 1.21279 * 119.99856 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99779 * 179.97438 * 15 14 13 18 18 C 1.53776 * 113.61335 * 277.50160 * 17 15 14 19 19 C 1.53786 * 87.07969 * 220.01822 * 18 17 15 20 20 C 1.53779 * 113.61167 * 180.02562 * 17 15 14 21 21 C 1.46959 * 118.81347 * 55.48149 * 14 13 12 22 22 C 1.46965 * 120.59803 * 354.84012 * 11 9 7 23 23 H 0.97002 * 119.99941 * 0.02562 * 1 2 3 24 24 H 1.08992 * 109.61321 * 115.50528 * 12 11 9 25 25 H 1.09005 * 109.60711 * 354.98912 * 12 11 9 26 26 H 1.09000 * 109.61294 * 190.83051 * 13 12 11 27 27 H 1.08998 * 109.61753 * 70.31750 * 13 12 11 28 28 H 1.09004 * 112.90372 * 48.74959 * 17 15 14 29 29 H 1.08996 * 113.61978 * 334.56336 * 18 17 15 30 30 H 1.08996 * 113.61360 * 105.47497 * 18 17 15 31 31 H 1.08998 * 113.61209 * 270.88893 * 19 18 17 32 32 H 1.08997 * 113.69227 * 139.99042 * 19 18 17 33 33 H 1.09004 * 113.60847 * 254.52997 * 20 17 15 34 34 H 1.08994 * 113.61761 * 25.42955 * 20 17 15 35 35 H 1.09005 * 109.61049 * 64.26272 * 21 14 13 36 36 H 1.08993 * 109.61219 * 184.77548 * 21 14 13 37 37 H 1.08994 * 109.61174 * 244.49427 * 22 11 9 38 38 H 1.08990 * 109.60707 * 5.01165 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2757 2.7464 -0.0006 6 1 3.0945 1.6963 1.2126 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2130 0.0010 9 6 1.2750 -2.4806 0.0017 10 8 0.0620 -2.4828 -0.0941 11 7 1.9448 -3.6452 0.1087 12 6 1.2186 -4.9177 0.2251 13 6 1.6962 -5.6404 1.4907 14 7 3.1658 -5.6608 1.4935 15 6 3.8355 -6.8255 1.6014 16 8 3.2253 -7.8692 1.6970 17 6 5.3425 -6.8308 1.6023 18 6 5.9594 -6.7786 0.1947 19 6 7.0019 -7.7901 0.6996 20 6 5.9534 -8.2361 1.7319 21 6 3.8920 -4.3880 1.3826 22 6 3.4143 -3.6656 0.1114 23 1 -0.4850 0.8401 -0.0004 24 1 1.4225 -5.5365 -0.6486 25 1 0.1485 -4.7229 0.2970 26 1 1.3163 -6.6621 1.4940 27 1 1.3361 -5.1108 2.3726 28 1 5.7690 -6.1035 2.2932 29 1 5.3071 -7.1755 -0.5831 30 1 6.3821 -5.8070 -0.0610 31 1 7.8820 -7.3251 1.1438 32 1 7.2527 -8.5612 -0.0288 33 1 6.3711 -8.4413 2.7176 34 1 5.2993 -9.0313 1.3743 35 1 3.6845 -3.7710 2.2570 36 1 4.9623 -4.5821 1.3145 37 1 3.7744 -4.1953 -0.7704 38 1 3.7942 -2.6440 0.1082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348588409.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:45 Heat of formation + Delta-G solvation = -65.486857 kcal Electronic energy + Delta-G solvation = -20802.266108 eV Core-core repulsion = 17644.608272 eV Total energy + Delta-G solvation = -3157.657835 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.60864 -39.94519 -38.43798 -37.42933 -34.81869 -34.42887 -32.57153 -29.22202 -28.42308 -26.94737 -26.50156 -24.60976 -23.60733 -21.78286 -20.62047 -19.66615 -18.82189 -18.01667 -17.46323 -17.14654 -16.49190 -16.25816 -16.07123 -15.80192 -15.67923 -15.31378 -14.49803 -14.37010 -13.75088 -13.61446 -13.52900 -13.33263 -13.13300 -12.93136 -12.82479 -12.67814 -12.36746 -12.30483 -12.08772 -11.98965 -11.91404 -11.37863 -11.24133 -10.89911 -10.66014 -10.08106 -9.78718 -9.01294 -8.27925 -6.83278 1.43631 1.46614 1.57516 1.58384 1.91292 2.26274 2.47258 2.81358 3.48069 3.58969 3.63840 3.73387 3.93639 3.95773 3.96951 4.15708 4.20191 4.32456 4.47564 4.55266 4.66506 4.72358 4.76694 4.83198 4.84634 4.91457 5.04704 5.10821 5.14391 5.22981 5.36397 5.43497 5.58420 5.71824 6.12179 6.30408 6.43939 6.89028 7.13064 7.39952 8.45642 8.67831 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.030099 B = 0.004923 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.030877 B = 5686.248702 C = 6358.894203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.028 3.972 3 Si 0.996 3.004 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.249 1.249 7 C -0.565 4.565 8 H 0.103 0.897 9 C 0.540 3.460 10 O -0.634 6.634 11 N -0.646 5.646 12 C 0.112 3.888 13 C 0.110 3.890 14 N -0.606 5.606 15 C 0.518 3.482 16 O -0.590 6.590 17 C -0.137 4.137 18 C -0.122 4.122 19 C -0.126 4.126 20 C -0.124 4.124 21 C 0.099 3.901 22 C 0.103 3.897 23 H 0.273 0.727 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.060 0.940 28 H 0.140 0.860 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.132 0.868 37 H 0.064 0.936 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.002 -8.440 2.949 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.187 4.187 3 Si 0.815 3.185 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.173 1.173 7 C -0.601 4.601 8 H 0.120 0.880 9 C 0.346 3.654 10 O -0.521 6.521 11 N -0.382 5.382 12 C -0.013 4.013 13 C -0.015 4.015 14 N -0.338 5.338 15 C 0.308 3.692 16 O -0.471 6.471 17 C -0.158 4.158 18 C -0.160 4.160 19 C -0.164 4.164 20 C -0.162 4.162 21 C -0.024 4.024 22 C -0.020 4.020 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.158 0.842 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.150 0.850 37 H 0.082 0.918 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 16.859 -8.899 2.943 19.289 hybrid contribution -0.799 0.593 -0.054 0.996 sum 16.061 -8.307 2.889 18.311 Atomic orbital electron populations 1.70198 1.09751 1.28975 1.36520 1.27028 0.95423 1.05081 0.91143 0.85088 0.78195 0.74611 0.80557 1.17628 1.20637 1.17251 1.21475 0.95035 0.89253 1.54317 0.87953 1.18774 0.86587 0.84109 0.75895 1.90551 1.16891 1.87266 1.57390 1.48054 1.06707 1.05088 1.78401 1.21467 0.97463 0.85703 0.96634 1.21771 0.80991 1.01220 0.97491 1.48208 1.06278 1.07582 1.71729 1.21370 0.91540 0.82047 0.74220 1.90626 1.71178 1.32860 1.52441 1.22986 0.88322 1.02235 1.02257 1.22863 0.97790 1.02028 0.93304 1.22807 0.96823 0.98635 0.98106 1.22801 0.97728 0.94539 1.01104 1.22449 0.98177 0.83355 0.98435 1.22145 0.80044 1.02709 0.97116 0.91705 0.92876 0.91718 0.88987 0.92150 0.84220 0.91561 0.88250 0.87508 0.90679 0.90037 0.91404 0.91097 0.85038 0.91769 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.62 11.84 21.84 0.26 -49.37 16 2 C 0.03 1.51 5.50 85.31 0.47 1.98 16 3 Si 1.00 38.68 29.56 68.60 2.03 40.70 16 4 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 5 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 6 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 7 C -0.56 -30.07 8.88 24.83 0.22 -29.85 16 8 H 0.10 4.64 5.63 -2.91 -0.02 4.63 16 9 C 0.54 30.54 7.61 86.36 0.66 31.19 16 10 O -0.63 -42.30 14.47 -4.30 -0.06 -42.36 16 11 N -0.65 -28.55 2.95 -822.23 -2.42 -30.98 16 12 C 0.11 4.58 6.58 86.41 0.57 5.14 16 13 C 0.11 3.82 6.59 86.41 0.57 4.39 16 14 N -0.61 -17.91 2.94 -817.13 -2.40 -20.31 16 15 C 0.52 14.79 7.22 87.66 0.63 15.42 16 16 O -0.59 -21.48 15.30 -3.03 -0.05 -21.53 16 17 C -0.14 -2.54 2.72 -11.01 -0.03 -2.57 16 18 C -0.12 -1.87 7.25 31.12 0.23 -1.64 16 19 C -0.13 -1.56 8.08 31.11 0.25 -1.31 16 20 C -0.12 -2.19 7.40 31.11 0.23 -1.96 16 21 C 0.10 2.47 6.51 86.57 0.56 3.03 16 22 C 0.10 3.31 6.52 86.57 0.56 3.87 16 23 H 0.27 14.99 8.29 -92.71 -0.77 14.22 16 24 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.06 3.02 7.02 -2.38 -0.02 3.01 16 26 H 0.09 3.20 6.99 -2.39 -0.02 3.18 16 27 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.14 1.84 7.42 -2.38 -0.02 1.82 16 29 H 0.07 1.28 8.09 -2.39 -0.02 1.27 16 30 H 0.10 1.11 8.01 -2.39 -0.02 1.09 16 31 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.07 1.56 7.43 -2.39 -0.02 1.55 16 35 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.13 2.09 5.48 -2.39 -0.01 2.08 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 38 H 0.11 3.38 5.29 -2.39 -0.01 3.37 16 Total: -1.00 -79.16 305.92 3.34 -75.82 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 1.07 Total: 20.32 kcal Atomic # 6 Polarization: 22.78 SS G_CDS: 4.92 Total: 27.70 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -4.57 Total: -100.66 kcal Atomic # 8 Polarization: -63.78 SS G_CDS: -0.11 Total: -63.89 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.70 kcal Total: -79.16 3.34 -75.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348588409.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.335 kcal (2) G-P(sol) polarization free energy of solvation -79.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds