Wall clock time and date at job start Mon Mar 30 2020 04:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 110.67108 * 2 1 4 4 O 1.21280 * 119.99983 * 120.70239 * 3 2 1 5 5 N 1.34773 * 120.00175 * 300.70102 * 3 2 1 6 6 C 1.46500 * 120.00214 * 179.97438 * 5 3 2 7 7 C 1.50704 * 109.47215 * 180.02562 * 6 5 3 8 8 O 1.21291 * 119.99796 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99948 * 180.02562 * 7 6 5 10 10 C 1.37098 * 119.99961 * 180.02562 * 9 7 6 11 11 H 1.07993 * 119.99929 * 359.97438 * 10 9 7 12 12 C 1.38950 * 119.99681 * 180.02562 * 10 9 7 13 13 N 1.31411 * 119.99585 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00330 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.46869 * 90.00056 * 14 12 10 16 16 H 1.48499 * 109.47130 * 210.00082 * 14 12 10 17 17 H 1.48494 * 109.46870 * 329.99971 * 14 12 10 18 18 C 1.54890 * 110.75676 * 236.56644 * 2 1 3 19 19 C 1.54266 * 104.19481 * 279.62662 * 18 2 1 20 20 H 1.08999 * 117.76422 * 116.74961 * 19 18 2 21 21 C 1.55470 * 118.30315 * 272.80333 * 19 18 2 22 22 C 1.53000 * 59.84115 * 93.29354 * 21 19 18 23 23 H 1.08991 * 119.29838 * 111.71094 * 22 21 19 24 24 C 1.54271 * 118.19783 * 265.85535 * 22 21 19 25 25 H 1.09002 * 109.47153 * 296.76305 * 1 2 3 26 26 H 1.09001 * 109.46832 * 176.76496 * 1 2 3 27 27 H 1.09004 * 109.47261 * 56.76477 * 1 2 3 28 28 H 0.97002 * 120.00133 * 0.02562 * 5 3 2 29 29 H 1.09002 * 109.47041 * 300.00233 * 6 5 3 30 30 H 1.09005 * 109.47053 * 59.99937 * 6 5 3 31 31 H 0.97006 * 119.99714 * 0.02562 * 9 7 6 32 32 H 0.97008 * 120.00094 * 180.02562 * 13 12 10 33 33 H 1.09003 * 110.48963 * 38.30038 * 18 2 1 34 34 H 1.09000 * 110.48706 * 160.94651 * 18 2 1 35 35 H 1.09002 * 118.06052 * 346.16040 * 21 19 18 36 36 H 1.08996 * 117.18904 * 200.82248 * 21 19 18 37 37 H 1.08994 * 110.48665 * 330.31993 * 24 22 21 38 38 H 1.08998 * 110.59727 * 207.73226 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0620 1.4100 0.0000 4 8 2.7778 1.7881 0.9031 5 7 1.7423 2.2509 -1.0036 6 6 2.2590 3.6217 -1.0033 7 6 1.7572 4.3480 -2.2247 8 8 1.0390 3.7765 -3.0177 9 7 2.1073 5.6321 -2.4364 10 6 1.6504 6.2930 -3.5473 11 1 1.0103 5.7844 -4.2530 12 6 2.0118 7.6168 -3.7658 13 7 1.5734 8.2503 -4.8304 14 14 3.1207 8.4958 -2.5464 15 1 4.5396 8.3032 -2.9398 16 1 2.8005 9.9458 -2.5422 17 1 2.9035 7.9369 -1.1879 18 6 2.0789 -0.7980 -1.2087 19 6 1.9791 -2.2722 -0.7655 20 1 1.3180 -2.9289 -1.3311 21 6 3.1663 -2.8849 0.0297 22 6 1.9791 -2.2696 0.7733 23 1 1.3116 -2.9176 1.3412 24 6 2.0790 -0.7938 1.2114 25 1 -0.3633 0.4628 0.9176 26 1 -0.3633 -1.0261 -0.0580 27 1 -0.3634 0.5633 -0.8596 28 1 1.1695 1.9487 -1.7257 29 1 1.9163 4.1390 -0.1071 30 1 3.3488 3.5993 -1.0155 31 1 2.6826 6.0888 -1.8028 32 1 1.8259 9.1744 -4.9832 33 1 1.4648 -0.6229 -2.0921 34 1 3.1166 -0.5279 -1.4046 35 1 4.1087 -2.3374 0.0471 36 1 3.2544 -3.9713 0.0349 37 1 3.1166 -0.5231 1.4063 38 1 1.4663 -0.6137 2.0948 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354385577.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:00 Heat of formation + Delta-G solvation = -75.931010 kcal Electronic energy + Delta-G solvation = -20078.047682 eV Core-core repulsion = 16919.936955 eV Total energy + Delta-G solvation = -3158.110728 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.74866 -40.46313 -39.29667 -36.31807 -35.41104 -34.16864 -33.82413 -29.68643 -29.11485 -27.89033 -26.44603 -24.18092 -21.95409 -21.50451 -20.72871 -20.63973 -20.06334 -18.18171 -17.50233 -16.99612 -16.86690 -16.73295 -16.55830 -15.63494 -15.56163 -14.97739 -14.79300 -14.39959 -14.18876 -14.07525 -13.90570 -13.47426 -13.20585 -13.05806 -12.97688 -12.55328 -12.46342 -12.25618 -12.01915 -11.97334 -11.80575 -11.59854 -10.91830 -10.81097 -10.67727 -10.49754 -10.35314 -10.20175 -8.47066 -6.09139 1.29668 1.32606 1.42531 1.53376 1.77497 1.98755 2.19085 2.67054 2.85045 3.09087 3.40814 3.61096 3.79525 3.92134 4.03859 4.07949 4.16760 4.35671 4.37508 4.42148 4.44586 4.55039 4.74188 4.83221 4.91991 4.94348 5.00941 5.12696 5.17493 5.24528 5.27255 5.35283 5.44194 5.47292 5.86518 6.45293 6.48239 6.76453 7.11296 7.27843 7.75863 8.69361 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.041742 B = 0.003732 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.625436 B = 7501.478726 C = 7759.433108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.078 4.078 3 C 0.524 3.476 4 O -0.578 6.578 5 N -0.707 5.707 6 C 0.115 3.885 7 C 0.445 3.555 8 O -0.613 6.613 9 N -0.578 5.578 10 C -0.332 4.332 11 H 0.064 0.936 12 C -0.007 4.007 13 N -0.925 5.925 14 Si 0.958 3.042 15 H -0.257 1.257 16 H -0.273 1.273 17 H -0.234 1.234 18 C -0.085 4.085 19 C -0.163 4.163 20 H 0.131 0.869 21 C -0.155 4.155 22 C -0.158 4.158 23 H 0.128 0.872 24 C -0.073 4.073 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.413 0.587 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.392 0.608 32 H 0.281 0.719 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.117 0.883 37 H 0.060 0.940 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.295 -18.846 13.005 23.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.081 4.081 3 C 0.312 3.688 4 O -0.458 6.458 5 N -0.361 5.361 6 C -0.012 4.012 7 C 0.233 3.767 8 O -0.499 6.499 9 N -0.218 5.218 10 C -0.461 4.461 11 H 0.082 0.918 12 C -0.207 4.207 13 N -0.565 5.565 14 Si 0.778 3.222 15 H -0.181 1.181 16 H -0.198 1.198 17 H -0.157 1.157 18 C -0.123 4.123 19 C -0.181 4.181 20 H 0.149 0.851 21 C -0.192 4.192 22 C -0.176 4.176 23 H 0.146 0.854 24 C -0.111 4.111 25 H 0.079 0.921 26 H 0.109 0.891 27 H 0.079 0.921 28 H 0.251 0.749 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.227 0.773 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.135 0.865 37 H 0.078 0.922 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.295 -18.724 12.965 22.890 hybrid contribution 0.252 1.111 -0.266 1.170 sum 2.546 -17.614 12.699 21.863 Atomic orbital electron populations 1.21768 0.90449 1.04231 1.02474 1.21957 0.98377 0.89300 0.98504 1.21010 0.79533 0.87871 0.80399 1.90651 1.39286 1.78486 1.37368 1.45789 1.52188 1.11368 1.26752 1.20901 1.00574 0.83629 0.96141 1.20477 0.84612 0.82717 0.88941 1.90525 1.42193 1.67491 1.49660 1.41936 1.45918 1.11162 1.22736 1.19038 1.30204 0.95852 1.01014 0.91779 1.26056 0.99039 0.96588 0.99023 1.69779 1.45423 1.12726 1.28556 0.85449 0.78842 0.78574 0.79291 1.18091 1.19754 1.15710 1.21980 1.00897 0.93140 0.96270 1.23581 1.03626 0.96223 0.94661 0.85129 1.23547 0.92564 1.00982 1.02084 1.23236 1.03118 0.96399 0.94816 0.85410 1.21814 1.01136 0.92198 0.95932 0.92101 0.89053 0.92145 0.74876 0.87978 0.87973 0.77259 0.90884 0.89609 0.92272 0.89891 0.86462 0.92174 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.42 71.98 0.61 -1.80 16 2 C -0.08 -1.70 0.76 -51.64 -0.04 -1.74 16 3 C 0.52 15.34 6.54 87.66 0.57 15.91 16 4 O -0.58 -20.26 15.76 -3.03 -0.05 -20.31 16 5 N -0.71 -21.83 5.41 -466.78 -2.53 -24.36 16 6 C 0.12 3.82 6.15 85.63 0.53 4.34 16 7 C 0.45 19.40 7.85 87.66 0.69 20.09 16 8 O -0.61 -31.41 15.24 -3.06 -0.05 -31.45 16 9 N -0.58 -26.57 5.09 -306.99 -1.56 -28.13 16 10 C -0.33 -18.83 10.16 84.04 0.85 -17.98 16 11 H 0.06 4.29 7.39 -2.91 -0.02 4.26 16 12 C -0.01 -0.38 5.50 84.93 0.47 0.09 16 13 N -0.93 -54.25 13.96 21.66 0.30 -53.95 16 14 Si 0.96 38.08 27.74 68.60 1.90 39.98 16 15 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 16 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 17 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 18 C -0.09 -1.67 5.56 31.67 0.18 -1.49 16 19 C -0.16 -2.47 6.61 -9.22 -0.06 -2.53 16 20 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 21 C -0.15 -2.24 10.21 31.44 0.32 -1.92 16 22 C -0.16 -2.38 6.50 -10.07 -0.07 -2.45 16 23 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 24 C -0.07 -1.48 5.16 31.67 0.16 -1.32 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.09 1.29 7.50 -2.39 -0.02 1.27 16 27 H 0.06 1.17 7.55 -2.38 -0.02 1.15 16 28 H 0.41 12.83 6.86 -92.71 -0.64 12.19 16 29 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 30 H 0.10 3.09 8.14 -2.38 -0.02 3.07 16 31 H 0.39 15.15 5.76 -92.70 -0.53 14.62 16 32 H 0.28 15.07 8.31 -92.70 -0.77 14.30 16 33 H 0.09 1.59 8.06 -2.39 -0.02 1.57 16 34 H 0.06 1.32 8.05 -2.39 -0.02 1.30 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.47 7.48 -2.39 -0.02 1.45 16 38 H 0.08 1.50 8.06 -2.39 -0.02 1.48 16 Total: -1.00 -71.01 315.34 2.09 -68.92 By element: Atomic # 1 Polarization: 40.23 SS G_CDS: -0.15 Total: 40.09 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 4.21 Total: 9.21 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -3.79 Total: -106.44 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -0.09 Total: -51.76 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 1.90 Total: 39.98 kcal Total: -71.01 2.09 -68.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354385577.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.008 kcal (2) G-P(sol) polarization free energy of solvation -71.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds