Wall clock time and date at job start Mon Mar 30 2020 05:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47287 * 2 1 4 4 N 1.29936 * 125.37687 * 90.00402 * 3 2 1 5 5 C 1.36060 * 108.47523 * 179.97438 * 4 3 2 6 6 C 1.47423 * 126.45058 * 180.02562 * 5 4 3 7 7 O 1.21605 * 120.00571 * 179.97438 * 6 5 4 8 8 N 1.34778 * 119.99723 * 359.96978 * 6 5 4 9 9 C 1.46502 * 120.00072 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.47053 * 35.00318 * 9 8 6 11 11 C 1.50702 * 109.46779 * 155.00037 * 9 8 6 12 12 H 1.08002 * 120.00632 * 5.45024 * 11 9 8 13 13 C 1.37881 * 119.99780 * 185.45509 * 11 9 8 14 14 N 1.31519 * 119.99874 * 9.46514 * 13 11 9 15 15 Si 1.86800 * 119.99986 * 189.46911 * 13 11 9 16 16 H 1.48504 * 109.46954 * 84.99232 * 15 13 11 17 17 H 1.48504 * 109.46865 * 204.99083 * 15 13 11 18 18 H 1.48501 * 109.47382 * 324.99229 * 15 13 11 19 19 C 1.52991 * 109.47206 * 275.00049 * 9 8 6 20 20 C 1.53000 * 109.47500 * 64.89957 * 19 9 8 21 21 C 1.36086 * 107.10557 * 359.97438 * 5 4 3 22 22 C 1.50708 * 126.52522 * 179.74070 * 21 5 4 23 23 O 1.34055 * 125.37844 * 269.94585 * 3 2 1 24 24 H 1.09002 * 109.47456 * 300.00313 * 1 2 3 25 25 H 1.09007 * 109.47242 * 59.99457 * 1 2 3 26 26 H 1.08997 * 109.47560 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46915 * 240.00454 * 2 1 3 28 28 H 1.09001 * 109.47410 * 120.00119 * 2 1 3 29 29 H 0.97008 * 119.99904 * 0.02562 * 8 6 5 30 30 H 0.97000 * 119.99588 * 179.97438 * 14 13 11 31 31 H 1.09006 * 109.47132 * 184.90430 * 19 9 8 32 32 H 1.09002 * 109.47308 * 304.89870 * 19 9 8 33 33 H 1.09002 * 109.46911 * 59.99669 * 20 19 9 34 34 H 1.08994 * 109.47572 * 179.97438 * 20 19 9 35 35 H 1.08998 * 109.47001 * 300.00246 * 20 19 9 36 36 H 1.08998 * 109.46751 * 90.00561 * 22 21 5 37 37 H 1.09002 * 109.46802 * 210.00090 * 22 21 5 38 38 H 1.08994 * 109.46886 * 329.99763 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2832 2.1300 1.0594 5 6 2.7177 3.3572 0.6639 6 6 3.1127 4.4721 1.5438 7 8 3.4858 5.5244 1.0619 8 7 3.0603 4.3251 2.8826 9 6 3.4524 5.4331 3.7571 10 1 3.1617 6.3782 3.2985 11 6 2.7639 5.2888 5.0899 12 1 2.1711 4.4107 5.2993 13 6 2.8909 6.2780 6.0420 14 7 3.4523 7.4250 5.7278 15 14 2.2658 5.9887 7.7784 16 1 3.3097 5.2898 8.5703 17 1 1.9518 7.2931 8.4151 18 1 1.0389 5.1534 7.7301 19 6 4.9684 5.4101 3.9610 20 6 5.6668 5.6784 2.6264 21 6 2.7201 3.3615 -0.6970 22 6 3.1205 4.5079 -1.5896 23 8 2.2920 2.1522 -1.0930 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 2.7630 3.4855 3.2670 30 1 3.5413 8.1210 6.3975 31 1 5.2501 6.1797 4.6797 32 1 5.2695 4.4329 4.3385 33 1 5.3657 6.6557 2.2488 34 1 6.7469 5.6625 2.7717 35 1 5.3851 4.9088 1.9077 36 1 4.1873 4.4457 -1.8042 37 1 2.5586 4.4555 -2.5222 38 1 2.9050 5.4513 -1.0881 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354694238.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:19 Heat of formation + Delta-G solvation = -37.003456 kcal Electronic energy + Delta-G solvation = -20463.257650 eV Core-core repulsion = 17306.834948 eV Total energy + Delta-G solvation = -3156.422702 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.27710 -38.83081 -35.11974 -34.95783 -33.99324 -32.28898 -31.50318 -30.92795 -27.48632 -26.58281 -24.46287 -23.20813 -22.48299 -21.17104 -20.00070 -19.34405 -17.78474 -16.84660 -16.21548 -15.44917 -15.26491 -14.77520 -14.55292 -14.37522 -14.12402 -13.45469 -13.28448 -12.95907 -12.65498 -12.63419 -12.35701 -12.13257 -11.92230 -11.47818 -11.41255 -11.33035 -10.98928 -10.97176 -10.74421 -10.57714 -10.32323 -10.17644 -9.67812 -9.17305 -9.07505 -8.60580 -8.44635 -7.78984 -6.11519 -4.16103 1.32490 2.28504 2.57214 3.28392 3.34719 3.36884 3.81640 3.96548 4.17674 4.42297 4.68990 4.91570 4.93274 5.07819 5.21707 5.30031 5.40439 5.51139 5.56117 5.61467 5.73220 5.92147 6.00407 6.16660 6.33126 6.36870 6.41843 6.61848 7.02492 7.17637 7.33758 7.42840 7.57757 7.69881 7.77199 7.89145 8.10202 8.72207 8.81802 9.13398 9.49331 10.96825 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.005246 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.703628 B = 5336.432037 C = 6271.173695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.023 4.023 3 C 0.181 3.819 4 N -0.452 5.452 5 C -0.061 4.061 6 C 0.585 3.415 7 O -0.544 6.544 8 N -0.686 5.686 9 C 0.267 3.733 10 H 0.058 0.942 11 C -0.536 4.536 12 H 0.062 0.938 13 C 0.070 3.930 14 N -0.881 5.881 15 Si 0.898 3.102 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.120 4.120 20 C -0.138 4.138 21 C 0.022 3.978 22 C -0.071 4.071 23 O -0.202 6.202 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.397 0.603 30 H 0.264 0.736 31 H 0.081 0.919 32 H 0.035 0.965 33 H 0.052 0.948 34 H 0.023 0.977 35 H 0.040 0.960 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 -12.294 -12.626 17.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.061 4.061 3 C -0.027 4.027 4 N -0.182 5.182 5 C -0.182 4.182 6 C 0.369 3.631 7 O -0.424 6.424 8 N -0.333 5.333 9 C 0.166 3.834 10 H 0.076 0.924 11 C -0.574 4.574 12 H 0.080 0.920 13 C -0.134 4.134 14 N -0.517 5.517 15 Si 0.725 3.275 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.159 4.159 20 C -0.196 4.196 21 C -0.033 4.033 22 C -0.127 4.127 23 O -0.090 6.090 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.125 0.875 29 H 0.230 0.770 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.273 -11.540 -12.227 16.966 hybrid contribution -0.336 -0.378 0.539 0.740 sum -2.610 -11.918 -11.688 16.896 Atomic orbital electron populations 1.21794 0.93166 1.02812 1.03136 1.20038 0.96804 0.84150 1.05068 1.26163 1.01107 0.96929 0.78538 1.70760 1.14827 1.02838 1.29775 1.22008 1.09129 0.94504 0.92535 1.16713 0.78793 0.84829 0.82779 1.90737 1.49142 1.27174 1.75349 1.46351 1.63592 1.18662 1.04646 1.18871 0.90966 0.85487 0.88085 0.92403 1.21185 1.32023 1.05724 0.98473 0.92013 1.24872 0.95112 0.94449 0.98978 1.69987 1.43614 1.04049 1.34090 0.86524 0.79183 0.77553 0.84233 1.20409 1.21188 1.19898 1.21853 0.97438 1.00394 0.96200 1.21844 0.97402 1.01602 0.98720 1.23705 0.99306 0.85537 0.94781 1.20541 1.02128 0.92764 0.97297 1.84264 1.64221 1.22531 1.37971 0.91504 0.92260 0.90992 0.89078 0.87541 0.76995 0.92588 0.90100 0.94650 0.92846 0.95739 0.94119 0.89400 0.90750 0.86715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.15 0.37 -0.82 16 2 C -0.02 -0.20 6.56 -27.88 -0.18 -0.38 16 3 C 0.18 2.52 7.56 -13.08 -0.10 2.42 16 4 N -0.45 -7.75 11.06 -7.65 -0.08 -7.83 16 5 C -0.06 -1.14 6.99 -83.03 -0.58 -1.72 16 6 C 0.59 12.63 6.38 -12.52 -0.08 12.55 16 7 O -0.54 -12.52 11.94 5.27 0.06 -12.46 16 8 N -0.69 -15.55 5.02 -56.01 -0.28 -15.84 16 9 C 0.27 6.91 2.11 -69.08 -0.15 6.76 16 10 H 0.06 1.71 7.52 -51.93 -0.39 1.32 16 11 C -0.54 -14.55 8.66 -34.44 -0.30 -14.85 16 12 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 13 C 0.07 1.90 5.16 -17.82 -0.09 1.81 16 14 N -0.88 -25.08 12.16 55.43 0.67 -24.41 16 15 Si 0.90 20.96 29.55 -169.99 -5.02 15.94 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 C -0.12 -2.94 5.50 -26.74 -0.15 -3.08 16 20 C -0.14 -3.09 8.51 37.16 0.32 -2.77 16 21 C 0.02 0.35 7.44 -35.08 -0.26 0.09 16 22 C -0.07 -0.91 9.87 36.01 0.36 -0.55 16 23 O -0.20 -2.91 10.73 6.50 0.07 -2.84 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.40 8.51 8.25 -40.82 -0.34 8.17 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.08 2.15 6.80 -51.93 -0.35 1.80 16 32 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 1.25 7.84 -51.93 -0.41 0.84 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.04 0.90 5.65 -51.93 -0.29 0.60 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.11 1.68 6.49 -51.93 -0.34 1.34 16 LS Contribution 318.28 15.07 4.80 4.80 Total: -1.00 -30.97 318.28 -6.10 -37.06 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.46 Total: 6.12 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -0.85 Total: -0.55 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 0.31 Total: -48.07 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.13 Total: -15.30 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.97 -6.10 -37.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354694238.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.061 kcal (2) G-P(sol) polarization free energy of solvation -30.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds