Wall clock time and date at job start Mon Mar 30 2020 05:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47287 * 2 1 4 4 N 1.29936 * 125.37687 * 90.00402 * 3 2 1 5 5 C 1.36060 * 108.47523 * 179.97438 * 4 3 2 6 6 C 1.47423 * 126.45058 * 180.02562 * 5 4 3 7 7 O 1.21605 * 120.00571 * 179.97438 * 6 5 4 8 8 N 1.34778 * 119.99723 * 359.96978 * 6 5 4 9 9 C 1.46502 * 120.00072 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.47053 * 35.00318 * 9 8 6 11 11 C 1.50702 * 109.46779 * 155.00037 * 9 8 6 12 12 H 1.08002 * 120.00632 * 5.45024 * 11 9 8 13 13 C 1.37881 * 119.99780 * 185.45509 * 11 9 8 14 14 N 1.31519 * 119.99874 * 9.46514 * 13 11 9 15 15 Si 1.86800 * 119.99986 * 189.46911 * 13 11 9 16 16 H 1.48504 * 109.46954 * 84.99232 * 15 13 11 17 17 H 1.48504 * 109.46865 * 204.99083 * 15 13 11 18 18 H 1.48501 * 109.47382 * 324.99229 * 15 13 11 19 19 C 1.52991 * 109.47206 * 275.00049 * 9 8 6 20 20 C 1.53000 * 109.47500 * 64.89957 * 19 9 8 21 21 C 1.36086 * 107.10557 * 359.97438 * 5 4 3 22 22 C 1.50708 * 126.52522 * 179.74070 * 21 5 4 23 23 O 1.34055 * 125.37844 * 269.94585 * 3 2 1 24 24 H 1.09002 * 109.47456 * 300.00313 * 1 2 3 25 25 H 1.09007 * 109.47242 * 59.99457 * 1 2 3 26 26 H 1.08997 * 109.47560 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46915 * 240.00454 * 2 1 3 28 28 H 1.09001 * 109.47410 * 120.00119 * 2 1 3 29 29 H 0.97008 * 119.99904 * 0.02562 * 8 6 5 30 30 H 0.97000 * 119.99588 * 179.97438 * 14 13 11 31 31 H 1.09006 * 109.47132 * 184.90430 * 19 9 8 32 32 H 1.09002 * 109.47308 * 304.89870 * 19 9 8 33 33 H 1.09002 * 109.46911 * 59.99669 * 20 19 9 34 34 H 1.08994 * 109.47572 * 179.97438 * 20 19 9 35 35 H 1.08998 * 109.47001 * 300.00246 * 20 19 9 36 36 H 1.08998 * 109.46751 * 90.00561 * 22 21 5 37 37 H 1.09002 * 109.46802 * 210.00090 * 22 21 5 38 38 H 1.08994 * 109.46886 * 329.99763 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2832 2.1300 1.0594 5 6 2.7177 3.3572 0.6639 6 6 3.1127 4.4721 1.5438 7 8 3.4858 5.5244 1.0619 8 7 3.0603 4.3251 2.8826 9 6 3.4524 5.4331 3.7571 10 1 3.1617 6.3782 3.2985 11 6 2.7639 5.2888 5.0899 12 1 2.1711 4.4107 5.2993 13 6 2.8909 6.2780 6.0420 14 7 3.4523 7.4250 5.7278 15 14 2.2658 5.9887 7.7784 16 1 3.3097 5.2898 8.5703 17 1 1.9518 7.2931 8.4151 18 1 1.0389 5.1534 7.7301 19 6 4.9684 5.4101 3.9610 20 6 5.6668 5.6784 2.6264 21 6 2.7201 3.3615 -0.6970 22 6 3.1205 4.5079 -1.5896 23 8 2.2920 2.1522 -1.0930 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 2.7630 3.4855 3.2670 30 1 3.5413 8.1210 6.3975 31 1 5.2501 6.1797 4.6797 32 1 5.2695 4.4329 4.3385 33 1 5.3657 6.6557 2.2488 34 1 6.7469 5.6625 2.7717 35 1 5.3851 4.9088 1.9077 36 1 4.1873 4.4457 -1.8042 37 1 2.5586 4.4555 -2.5222 38 1 2.9050 5.4513 -1.0881 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354694238.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:19 Heat of formation + Delta-G solvation = -59.511316 kcal Electronic energy + Delta-G solvation = -20464.233664 eV Core-core repulsion = 17306.834948 eV Total energy + Delta-G solvation = -3157.398716 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.47949 -40.58078 -37.01496 -36.09366 -35.01361 -34.28181 -32.82101 -32.53850 -29.24921 -27.96249 -25.72851 -24.87673 -23.80619 -22.51622 -21.50744 -21.16819 -19.39512 -18.05921 -17.96200 -17.23600 -16.73065 -16.21375 -16.17656 -15.62889 -15.35705 -14.84173 -14.64534 -14.39681 -14.09759 -13.93233 -13.50883 -13.46565 -13.31475 -13.29394 -12.92688 -12.63943 -12.59969 -12.31182 -12.21723 -12.10291 -12.03299 -11.80721 -11.63844 -11.12950 -10.90276 -10.54747 -9.91478 -9.60463 -8.21157 -6.33957 0.06357 1.01593 1.43069 1.44505 1.45372 1.54262 2.30207 2.36940 2.50491 2.94379 3.10183 3.60374 3.85749 4.09275 4.25653 4.26558 4.38762 4.44975 4.51431 4.57223 4.59128 4.69335 4.87781 4.97391 5.02553 5.02839 5.11088 5.15873 5.21158 5.34909 5.39359 5.47926 5.58558 5.71883 5.85569 6.03936 6.46108 6.71953 6.92443 7.28122 7.44475 8.87603 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.005246 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.703628 B = 5336.432037 C = 6271.173695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.023 4.023 3 C 0.196 3.804 4 N -0.484 5.484 5 C -0.101 4.101 6 C 0.584 3.416 7 O -0.566 6.566 8 N -0.690 5.690 9 C 0.276 3.724 10 H 0.011 0.989 11 C -0.554 4.554 12 H 0.064 0.936 13 C 0.022 3.978 14 N -0.913 5.913 15 Si 0.967 3.033 16 H -0.269 1.269 17 H -0.283 1.283 18 H -0.268 1.268 19 C -0.112 4.112 20 C -0.124 4.124 21 C 0.038 3.962 22 C -0.070 4.070 23 O -0.194 6.194 24 H 0.045 0.955 25 H 0.057 0.943 26 H 0.101 0.899 27 H 0.123 0.877 28 H 0.117 0.883 29 H 0.402 0.598 30 H 0.267 0.733 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.034 0.966 34 H 0.050 0.950 35 H 0.040 0.960 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.900 -14.629 -13.462 20.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.061 4.061 3 C -0.013 4.013 4 N -0.214 5.214 5 C -0.220 4.220 6 C 0.370 3.630 7 O -0.447 6.447 8 N -0.337 5.337 9 C 0.174 3.826 10 H 0.029 0.971 11 C -0.592 4.592 12 H 0.083 0.917 13 C -0.179 4.179 14 N -0.550 5.550 15 Si 0.792 3.208 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.192 1.192 19 C -0.151 4.151 20 C -0.181 4.181 21 C -0.019 4.019 22 C -0.126 4.126 23 O -0.082 6.082 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.120 0.880 27 H 0.141 0.859 28 H 0.135 0.865 29 H 0.236 0.764 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.656 -13.894 -13.069 19.259 hybrid contribution -0.263 0.294 0.688 0.793 sum -2.919 -13.600 -12.382 18.622 Atomic orbital electron populations 1.21789 0.92306 1.04416 1.02046 1.20429 0.97315 0.81147 1.07167 1.27266 0.98514 0.97989 0.77550 1.70711 1.16561 1.02735 1.31365 1.21594 1.12484 0.94700 0.93196 1.17065 0.77891 0.85498 0.82527 1.90714 1.49945 1.28391 1.75643 1.46159 1.64447 1.18023 1.05085 1.18497 0.91752 0.84569 0.87818 0.97082 1.21484 1.32449 1.05994 0.99266 0.91739 1.25725 0.95216 0.93979 1.02978 1.70117 1.44631 1.04873 1.35419 0.85437 0.78868 0.77515 0.79004 1.19455 1.20899 1.19221 1.21702 0.96829 0.99856 0.96757 1.21677 0.98741 1.00432 0.97288 1.24112 0.97200 0.86383 0.94158 1.20639 1.03587 0.90511 0.97885 1.84319 1.63988 1.21940 1.37964 0.93583 0.92359 0.88049 0.85868 0.86483 0.76402 0.92443 0.92468 0.93851 0.94709 0.93091 0.94050 0.87837 0.87304 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.89 71.98 0.71 -1.21 16 2 C -0.02 -0.33 6.56 29.85 0.20 -0.14 16 3 C 0.20 5.06 7.56 88.39 0.67 5.73 16 4 N -0.48 -16.35 11.06 -293.03 -3.24 -19.59 16 5 C -0.10 -3.77 6.99 40.41 0.28 -3.48 16 6 C 0.58 25.98 6.38 86.66 0.55 26.54 16 7 O -0.57 -27.04 11.94 -4.05 -0.05 -27.08 16 8 N -0.69 -32.36 5.02 -449.38 -2.25 -34.61 16 9 C 0.28 14.86 2.11 44.24 0.09 14.95 16 10 H 0.01 0.70 7.52 -2.39 -0.02 0.69 16 11 C -0.55 -30.78 8.66 25.60 0.22 -30.55 16 12 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 13 C 0.02 1.21 5.16 84.65 0.44 1.65 16 14 N -0.91 -53.36 12.16 21.45 0.26 -53.10 16 15 Si 0.97 43.21 29.55 68.60 2.03 45.24 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 C -0.11 -5.65 5.50 30.59 0.17 -5.48 16 20 C -0.12 -5.62 8.51 71.98 0.61 -5.00 16 21 C 0.04 1.17 7.44 25.19 0.19 1.35 16 22 C -0.07 -1.69 9.87 71.24 0.70 -0.99 16 23 O -0.19 -5.14 10.73 0.36 0.00 -5.14 16 24 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.40 17.75 8.25 -92.70 -0.77 16.99 16 30 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.06 3.13 6.80 -2.38 -0.02 3.12 16 32 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.03 1.67 7.84 -2.39 -0.02 1.65 16 34 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.04 1.84 5.65 -2.39 -0.01 1.83 16 36 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.09 2.72 6.49 -2.39 -0.02 2.71 16 Total: -1.00 -69.16 318.28 1.89 -67.27 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.31 Total: 23.64 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 4.83 Total: 3.37 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -5.23 Total: -107.30 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.04 Total: -32.22 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -69.16 1.89 -67.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354694238.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.759 kcal (2) G-P(sol) polarization free energy of solvation -69.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds